Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065221
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 335549
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:8220 original size:25 final size:25
Alignment explanation
Indices: 8162--8217 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
8152 CACAAACAAT
*
8162 ACAGAAGAAATAGACGAAGTGATAT
1 ACAGAAGAAATAGACGAAGTGATAA
8187 AC-GTAAGAAATAGACGAAGTGATAAA
1 ACAG-AAGAAATAGACGAAGTGAT-AA
8213 ACAGA
1 ACAGA
8218 GAAGCTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 1 0.04
25 21 0.78
26 4 0.15
27 1 0.04
ACGTcount: A:0.54, C:0.09, G:0.23, T:0.14
Consensus pattern (25 bp):
ACAGAAGAAATAGACGAAGTGATAA
Left flanking sequence: Indices 7662 -- 8161
TCTTCGACACAAAATGGTTACTCCAGCCTAAACAACAATAATAACATGTCATGTTCCAACCCCAG
CAGAAGGTGAGGAGTAAGCTGAAATGACAGAATAAAGAATGTGGAAAACAGTGGAATGGTAGAAA
GAAAAGAATAATGTCATCTTACACTCTTACTCAACTAACAGAGTTACTAAAGTTGGTTGACTGGA
TAACAATCATTTGTTCATTTACAGGAAACAAACTTTCTTTAAATAGAACCGAAACAATCGTACAG
ATTGAATAACCAACCAATTGTGAGTACACACCAAAGGGAAAAACACCGAAAAGACTAAAGCTAAT
GGATAACCAACTTCGAATTTATAGACTCATTCGCTAATGGACAATCCAAATGCCCAGGATGTCAT
TATTCTACAAATATGAAAAAACCCACTAGTGTGCTCTGCAAGCACAGGAGTGTCTTGATTCAAGC
AATGACTATGTACATTAATTTCGATTGAAGTACATCACAAACAAT
Right flanking sequence: Indices 8218 -- 8717
GAAGCTTAAATGGCAGTTATAGCAAAAAGAACACAGTAATGACTATGTACTCCAGACTGAACTGT
AATTCATAGAAGGAAAATGCAACAAACTTTCTTGATGTATTTCAATTGACAAGAGCGAATACCAA
ATTAAAGCATCAAACTTTTCAATTTCCAATTCTCGAACCCCACACCAGAATCGGCAGAGAGCCCA
GTTATCATAACAAAAGAAAGCAATTATCAGAAACCCTAAACGTCAAATTGCAGAAACCCAATTCC
AGAAACATTAGAGTACTAAAGAAACCCAATTCACAGCAACAATGATATTAAAGATAGAAGGTGAG
TAATTACCAGTGCAGCGGCAATAATCGCAGAAAGGGGTGTCAGAGTTGTTGACGGTCTCTTCAAT
GGTGTAGAGAGGAACCACAAGGCTTCGGTTGTCATGAACAAGAAGAGTGCAGAGTCAGGGGACTC
TAATTTTGGCGTCGCATTACTAAAAAAAAAAGCAAACAAGTCGGA
Found at i:8952 original size:15 final size:15
Alignment explanation
Indices: 8932--8971 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
8922 CCGACAAACC
* *
8932 AAGAAAAAGAAGAGG
1 AAGAAAAAAAAAAGG
8947 AAGAAAAAAAAAAGG
1 AAGAAAAAAAAAAGG
8962 AA-AAAAAAAA
1 AAGAAAAAAAA
8972 GTACAGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAAAAGG
Left flanking sequence: Indices 8432 -- 8931
GCAATTATCAGAAACCCTAAACGTCAAATTGCAGAAACCCAATTCCAGAAACATTAGAGTACTAA
AGAAACCCAATTCACAGCAACAATGATATTAAAGATAGAAGGTGAGTAATTACCAGTGCAGCGGC
AATAATCGCAGAAAGGGGTGTCAGAGTTGTTGACGGTCTCTTCAATGGTGTAGAGAGGAACCACA
AGGCTTCGGTTGTCATGAACAAGAAGAGTGCAGAGTCAGGGGACTCTAATTTTGGCGTCGCATTA
CTAAAAAAAAAAGCAAACAAGTCGGAGACTCAAAAGGTCAAAAGGGAAATAGCTAGTGTTTTTGC
CGACCAAAAGAACTTGAAAGTTCAAGCTCTCAAAGGGCCGGGCGCTTTGGCGAACAATTGCTTTT
CATCTGGGCGTAAGATCCTTCTTCTTTTCGGGGAATTGCAGCCTGAGGAACTCCTGTAGTACGCT
CGGGCGCATAAAAAAAAAAAAAGGTCTCGAATGCCCCGACAAACC
Right flanking sequence: Indices 8972 -- 9471
GTACAGAAGAATCCCCCCGGTCAGAAAAAATAAATCATTTCTTTGACTTCTCCTATTTTTCACCC
TCTTATAAAAATAAGGTATTTATGAAACAAGTATTCATTAAATACCTTATTAAACCTTGCTTCAA
CCTCCTCTTGGAGGTAATTAAGATACTACTCACAGCACTAGCCAGAACTCTCTGTTTTTGGCTCC
TGTATATTTACTTTGTCTACTTTCTTCACATAAAAGATGTGGGAATTCGAGAGCTTCAATCACTA
GATTCGTTGGAGGCCATCGTAAACTTTCTCTTAGGAAAGGGGACCCCTCCGGTCCGCGATTCTGC
CAATAACTTGCCCGGTGAGAACCAGCTCACCTATCTCCTCTTGGGCTTTTTAATTGTCATGTATA
TTCTAAAATAAAAAGAATCGTTGGTGGAGCTTATTTATGATTTCGTGCCGAACCTCGTAAACGAA
CAAATAGGTGGTCTTTCTGGAAATGTGAAACAAAAGTTTTTCCCT
Found at i:20342 original size:15 final size:15
Alignment explanation
Indices: 20322--20355 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
20312 TCGACTGCCT
*
20322 TTCACTCCTCCGCTC
1 TTCACTCCTACGCTC
*
20337 TTCACTCCTACTCTC
1 TTCACTCCTACGCTC
20352 TTCA
1 TTCA
20356 TACAATAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.47, G:0.03, T:0.38
Consensus pattern (15 bp):
TTCACTCCTACGCTC
Left flanking sequence: Indices 19822 -- 20321
GCCACCCCTACCGCCTTCTGTCATGTACTATTATCATCCGCCCATATTGGCTTAACTCTAAGGAA
TAGGCGGTATGGATCCATTCCTTCCTTTTGATGCAATAAGCCCATTCTTATTTATTCAAAAATAA
AATTCCGTTCTATCCTATACATTCCTTCTTATCCTACTCTATTCCCTAAATACCAGATATTTCAT
TGTCTTCTATAACCGAACAAAGGAAACTGAGAATCCTAAAAAAGAAGTTACGCGAGTACCTCTAG
CAGGGATCCCTTCGCTCATAAGGAGGGTCCCAGAGGAAAGAAAGAGAGATTCTATACTGCATGCC
CCTATCCCGAACTGATCGATATAATCCATTCTAATTAATAGAGCCTGGCATGCTCTAAACCTACA
AACCAATGCTTAAGACAAAGAAAGAAGACTCAAGACTCATAAGGACAGGCATAAAATCGAAAGTA
GTAGGAAAGGGGAACTCCTCTCTAGAGGAAGGGATTCGACTGCCT
Right flanking sequence: Indices 20356 -- 20855
TACAATAGATTCTACGGAGCTAGCCATGCGCTAAAAAAGAGCAGACAGAGGCAGCTGCAATGCAT
AATAGCAGAATAGGTTGCAGCTCTTGCTCTCTCTTCTGCTCTTCGTCTAGAAGCACTATTCGATT
AGGAGAGGGTAATACATCATAAAAGTCCAGTGGCTACATCTAGCTATCTGAAGCTAACTTGTCCT
TATAACACTAGAATAGATAAAGGAAGGTTGAAACACTACAGGTAATAAAGATTTTATTCCCCTTG
CGCCTAGCAACAGGAAGACTAAGGCTAGCTATCCGCCTTCTTTCCCTACGGGCCTTCCATTAGTG
CACTAGCAGGTAAATAGATAGGTTCACGATCCCCACCTGACCTGGGAAGCACTCACTACGCTACG
TAGACTTCCACTTATTTTTTGATAGTGCCTGGTAACTAATCCCATTTACTAGCTCTTCTCTTACT
ATCGTGTTATAACCCTAAGGGCAAGCTAGCTACTCAAAACCATCT
Found at i:28685 original size:35 final size:35
Alignment explanation
Indices: 28639--28709 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
28629 TCCTTACTAT
28639 ATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTG
1 ATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTG
28674 ATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTG
1 ATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTG
28709 A
1 A
28710 ACCTGCGACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.06, G:0.37, T:0.31
Consensus pattern (35 bp):
ATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTG
Left flanking sequence: Indices 28139 -- 28638
ACAAGTTTCTTTTCCCAGCGGATGAAATTGTCCTAGATAGAGAACCTATCCAAATTTCAAAGATC
CCTGTTATACTTGGACGTCCTTTTATGGCTACTGCTAATACAATCATTGATGTTAAAAAAGGATT
TTTACTATGACGGTTGGTGATATGACGGTAGAGTTCAATGTGTTCAAAAGCAGTCAACAACCCCC
CGATTCGACCGAATGCTTTGCAGTGAACATGATCGAGAGTTTGGTTTCATTCTTACAAAATGCCC
CCTTGAGGCTTGTTTAGCACATTTTGGCATGGATTTCTACATAGAGAGTTCCGTTAGTGAAGTTA
ATGCCTTGCTTGACGCTGCCCCTGTTCTGAACATTACTACATGGCAATCAAAGTTCGAGCCACTC
TTATACTACTCCTTACCTCACCCCCCCCTTGTCACTTAAAGGGCGAAGTCGCTGAAGCGAGTCTA
AAGGCTAAAGAGTTCTATTTGAACGCTACTATGCATCCTTACTAT
Right flanking sequence: Indices 28710 -- 29209
ACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCAAAAAACATAT
ACATATAATATACATATACATATAGTAGTAAATAAGGATTGGTGCGGGGGCCCTTTTACCAAGTC
TACCGGATAGAAGATGATAGAGGGCCATATCGTTGCGTTGGACAAGACGGTGCCGTCTCACTTCG
AGTTCCTTCCTTCGTAGTAAAATCAGATAATACGCTTCGGCGATGTTACCTACCGGCCTGCTAGG
TGATCGAAATCGCTCAGGTCAGTGAGTCCTCACCTACTCCTTATCTATCTAATAGTTTCTTCTAT
CTACCTACTTTTTTCAAAAGGCGACCTGCCGCGCCGGGCTATAAGATAAGATACAGCTGTTGTAC
TACTTTACTGGTAATAAAAAGCTTACGCAAAACGGGAAGACTCTTGTATGTACGGTAACCCTCTC
TTCCGCTACTGGCGGACTATTGCACAGAAAGGCCGACAGAAGCAA
Found at i:28780 original size:6 final size:6
Alignment explanation
Indices: 28769--28798 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
28759 CACCCAAAAA
28769 ACATAT ACATAT A-ATAT ACATAT ACATAT A
1 ACATAT ACATAT ACATAT ACATAT ACATAT A
28799 GTAGTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Left flanking sequence: Indices 28269 -- 28768
TTTACTATGACGGTTGGTGATATGACGGTAGAGTTCAATGTGTTCAAAAGCAGTCAACAACCCCC
CGATTCGACCGAATGCTTTGCAGTGAACATGATCGAGAGTTTGGTTTCATTCTTACAAAATGCCC
CCTTGAGGCTTGTTTAGCACATTTTGGCATGGATTTCTACATAGAGAGTTCCGTTAGTGAAGTTA
ATGCCTTGCTTGACGCTGCCCCTGTTCTGAACATTACTACATGGCAATCAAAGTTCGAGCCACTC
TTATACTACTCCTTACCTCACCCCCCCCTTGTCACTTAAAGGGCGAAGTCGCTGAAGCGAGTCTA
AAGGCTAAAGAGTTCTATTTGAACGCTACTATGCATCCTTACTATATAGTGTAAGGTAGGTTTGG
GTATAGCAGGACTTGATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTA
GGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCAAAAA
Right flanking sequence: Indices 28799 -- 29298
GTAGTAAATAAGGATTGGTGCGGGGGCCCTTTTACCAAGTCTACCGGATAGAAGATGATAGAGGG
CCATATCGTTGCGTTGGACAAGACGGTGCCGTCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATC
AGATAATACGCTTCGGCGATGTTACCTACCGGCCTGCTAGGTGATCGAAATCGCTCAGGTCAGTG
AGTCCTCACCTACTCCTTATCTATCTAATAGTTTCTTCTATCTACCTACTTTTTTCAAAAGGCGA
CCTGCCGCGCCGGGCTATAAGATAAGATACAGCTGTTGTACTACTTTACTGGTAATAAAAAGCTT
ACGCAAAACGGGAAGACTCTTGTATGTACGGTAACCCTCTCTTCCGCTACTGGCGGACTATTGCA
CAGAAAGGCCGACAGAAGCAACGTTTCTTAGCGCGCTTTTCAAGCGCTTAGCTTCTGCGGCGGCA
AGGCAGGCCATAAAGTAAGTTCAGTTGGAAGCCTAAGCCAAGAAA
Found at i:28787 original size:11 final size:12
Alignment explanation
Indices: 28769--28798 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
28759 CACCCAAAAA
28769 ACATATACATAT
1 ACATATACATAT
28781 A-ATATACATAT
1 ACATATACATAT
28792 ACATATA
1 ACATATA
28799 GTAGTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (12 bp):
ACATATACATAT
Left flanking sequence: Indices 28269 -- 28768
TTTACTATGACGGTTGGTGATATGACGGTAGAGTTCAATGTGTTCAAAAGCAGTCAACAACCCCC
CGATTCGACCGAATGCTTTGCAGTGAACATGATCGAGAGTTTGGTTTCATTCTTACAAAATGCCC
CCTTGAGGCTTGTTTAGCACATTTTGGCATGGATTTCTACATAGAGAGTTCCGTTAGTGAAGTTA
ATGCCTTGCTTGACGCTGCCCCTGTTCTGAACATTACTACATGGCAATCAAAGTTCGAGCCACTC
TTATACTACTCCTTACCTCACCCCCCCCTTGTCACTTAAAGGGCGAAGTCGCTGAAGCGAGTCTA
AAGGCTAAAGAGTTCTATTTGAACGCTACTATGCATCCTTACTATATAGTGTAAGGTAGGTTTGG
GTATAGCAGGACTTGATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTA
GGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCAAAAA
Right flanking sequence: Indices 28799 -- 29298
GTAGTAAATAAGGATTGGTGCGGGGGCCCTTTTACCAAGTCTACCGGATAGAAGATGATAGAGGG
CCATATCGTTGCGTTGGACAAGACGGTGCCGTCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATC
AGATAATACGCTTCGGCGATGTTACCTACCGGCCTGCTAGGTGATCGAAATCGCTCAGGTCAGTG
AGTCCTCACCTACTCCTTATCTATCTAATAGTTTCTTCTATCTACCTACTTTTTTCAAAAGGCGA
CCTGCCGCGCCGGGCTATAAGATAAGATACAGCTGTTGTACTACTTTACTGGTAATAAAAAGCTT
ACGCAAAACGGGAAGACTCTTGTATGTACGGTAACCCTCTCTTCCGCTACTGGCGGACTATTGCA
CAGAAAGGCCGACAGAAGCAACGTTTCTTAGCGCGCTTTTCAAGCGCTTAGCTTCTGCGGCGGCA
AGGCAGGCCATAAAGTAAGTTCAGTTGGAAGCCTAAGCCAAGAAA
Found at i:48157 original size:22 final size:22
Alignment explanation
Indices: 48129--48173 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
48119 GTTAGACCAT
48129 ATCAGCACAAAAAAGCAAAGAA
1 ATCAGCACAAAAAAGCAAAGAA
48151 ATCAGCACAAAAAAGCAAAGAA
1 ATCAGCACAAAAAAGCAAAGAA
48173 A
1 A
48174 AAAAGTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.64, C:0.18, G:0.13, T:0.04
Consensus pattern (22 bp):
ATCAGCACAAAAAAGCAAAGAA
Left flanking sequence: Indices 47629 -- 48128
TACAACAAAGAATGGACTTTTGAAGACCCGGAAAAGAATTCACTAGCAGCTAGGTCCCAACTAGA
CTAGAAAAGGTCCTCTTATTCTCCGGACATTTACACTTCTTTTTACGGGTATGTGAGAGAAGTAG
ATGGCTCTGCTCGTCCATCTCGCTCGCTCCCTTTCGAGTTGCCATAGCATAAGACCTAGGGATCC
ATCAGTCCCCTCCCCTGTTTACCCCCATATCCCCGCTGCGTGGGCGTTCCTGTAGAAAGGAAGTA
AACTCAAAACGAATCGAAAACAACAAAAGCCACTAAAAAACTATTTAGGCGACATTCCACGCACA
ACTTGCATTGAAGACTGCCCACACGAGAAAGGAGCGACTCGCCAGGCTCGAACTGGCATAAAGAA
AATCGGATTAAAGATTTTCCTATCTTCCATCAAGAGGAGTCGCTTTGGTAACGCAGTTCGGGTAA
CAACTCAAACTAAAGCCTCCCTACATCTGTGGGTCGTTAGACCAT
Right flanking sequence: Indices 48174 -- 48673
AAAAGTCAAGCGAAAGAAGCCCGCATACCCACTTTTCTTTCCCCGCCCTATTTCTGGGACGGGCC
TCGCCTTTGACGACTACAGTCGATCCCAAATATTTCTCGAGCTTTTTTTCTTTTTTTTTTTCAAA
CTCTTAGTGAGTTTCGTGATTTTTTGTTGATAGTGAATCTCTTCTTCGATAAAGGAAAAGAGGCT
CACTATCAACAAAAGAAGGTCTATCCCTTCAATCCACTTTTCTAGACAAACAAGCTCGGGAAAAT
ATCCAAGCAGGAAAAAGAGACCCCCGAAGAAGAGGGGTATTATGGGTTGCTTTCTTCTAGGCAAA
CAATTCCAGAAGAAAAGCAACCCAAACACGAAGCAAAAATGTATAGCGATGAATATGAAGATTCC
TTCTGAAATCCCCCATATGGTTCTTGTTTCACTAGGTGAAACATAGACGCCAATGATAAGGCTTA
GGAGGAAATAAAGAAAAAAGGATACAGTTAACTGATATGCTGTGC
Found at i:67880 original size:21 final size:21
Alignment explanation
Indices: 67864--67938 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 21
67854 CGGAAGTGAG
*
67864 TTAGACAAAAAGAGAAGAAAC
1 TTAGACAAAAAGAGAAGTAAC
* *
67885 TTGGACAAAAAAAGAAGTAAC
1 TTAGACAAAAAGAGAAGTAAC
* *
67906 TTGGACAAAAAGAAAGGAAGTGAC
1 TTAGACAAAAAG--A-GAAGTAAC
67930 TTAGACAAA
1 TTAGACAAA
67939 TCTTTTTTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 29 0.64
23 1 0.02
24 15 0.33
ACGTcount: A:0.56, C:0.09, G:0.21, T:0.13
Consensus pattern (21 bp):
TTAGACAAAAAGAGAAGTAAC
Left flanking sequence: Indices 67364 -- 67863
TATTGATACGGGCCTTTTCCACAAAAAAAGGGAATCCTTTGTTACAATAGAAGCAGAAGTGATGT
GGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGCAGATATCAATGAACTTCTATGAAA
TGGTTTCACGGGATTCAGCCAATTGTCTTGATCGCGGGATATCATTGAGAAATAGGAATCCATGT
TATCAAAAGATTTCCTGCTATTATTTCTAGTATGGAATGAGTCAATCACCCACTTTGGTATCTTA
ATCTTATTGAACAAAAACGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGT
ATCATGATCATCTAATAAGAAGGGTTTCCATTTTTTCAAATGAACGATTTGAAGACCTATTGATT
CTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATATATGTGGATCTCGGACCTA
TGAATGGGGATATTCCCGAAACTCATAAAGAAAAACGGAAGTGAG
Right flanking sequence: Indices 67939 -- 68438
TCTTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGACTAC
TTGAAAATGAAAATGGCTCTTCTGCTCAGAAATGAAATGTTCCAAATGTTCCTGTAACTTCTTGC
TCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTTGGTTCGAGAA
ATAAAAATAAGAGGATCGAACCATTTCTTCTGACTCTTTTTCAAATTTGATAAATGTTGGTTGAT
CGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCAT
ATTCGAAGTTGCAACCGGATCTATTCATTAAAAATAAAAAGAATCGATTCAATACATTTCTTATG
CACCCATAGGTGCTATATTGGATTTGAATCAGATTTTGGATCAATCTATATTGATTGACTGCCTC
CATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATC
Found at i:67931 original size:24 final size:23
Alignment explanation
Indices: 67856--67938 Score: 77
Period size: 24 Copynumber: 3.7 Consensus size: 23
67846 AAGAAAAACG
*
67856 GAAGTGAGTTAGACAAAAAGAGAA
1 GAAGTGACTTAGACAAAAAGA-AA
*
67880 GAA---ACTTGGAC-AAAA-AAA
1 GAAGTGACTTAGACAAAAAGAAA
* *
67898 GAAGTAACTTGGACAAAAAGAAA
1 GAAGTGACTTAGACAAAAAGAAA
67921 GGAAGTGACTTAGACAAA
1 -GAAGTGACTTAGACAAA
67939 TCTTTTTTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
18 5 0.10
19 1 0.02
20 4 0.08
21 14 0.29
22 4 0.08
23 3 0.06
24 18 0.37
ACGTcount: A:0.54, C:0.08, G:0.24, T:0.13
Consensus pattern (23 bp):
GAAGTGACTTAGACAAAAAGAAA
Left flanking sequence: Indices 67356 -- 67855
ATCATAATTATTGATACGGGCCTTTTCCACAAAAAAAGGGAATCCTTTGTTACAATAGAAGCAGA
AGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGCAGATATCAATGAACTT
CTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTTGATCGCGGGATATCATTGAGAAATAGGA
ATCCATGTTATCAAAAGATTTCCTGCTATTATTTCTAGTATGGAATGAGTCAATCACCCACTTTG
GTATCTTAATCTTATTGAACAAAAACGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTT
TGGGAAGTATCATGATCATCTAATAAGAAGGGTTTCCATTTTTTCAAATGAACGATTTGAAGACC
TATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATATATGTGGATCT
CGGACCTATGAATGGGGATATTCCCGAAACTCATAAAGAAAAACG
Right flanking sequence: Indices 67939 -- 68438
TCTTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGACTAC
TTGAAAATGAAAATGGCTCTTCTGCTCAGAAATGAAATGTTCCAAATGTTCCTGTAACTTCTTGC
TCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTTGGTTCGAGAA
ATAAAAATAAGAGGATCGAACCATTTCTTCTGACTCTTTTTCAAATTTGATAAATGTTGGTTGAT
CGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCAT
ATTCGAAGTTGCAACCGGATCTATTCATTAAAAATAAAAAGAATCGATTCAATACATTTCTTATG
CACCCATAGGTGCTATATTGGATTTGAATCAGATTTTGGATCAATCTATATTGATTGACTGCCTC
CATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATC
Found at i:69967 original size:24 final size:24
Alignment explanation
Indices: 69935--69983 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69925 ACGGTTTCAT
69935 TAGATATCTTACAACTAGAATCCC
1 TAGATATCTTACAACTAGAATCCC
69959 TAGATATCTTACAACTAGAATCCC
1 TAGATATCTTACAACTAGAATCCC
69983 T
1 T
69984 CTTTTTTCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (24 bp):
TAGATATCTTACAACTAGAATCCC
Left flanking sequence: Indices 69435 -- 69934
CTTGCTAAAAAACCGATCCTTGTTTACCAACCACACATTGTCTAACCAATTCTCTCTCGATATGT
TCCTCAAAAAATCCGATTCGTGCGGATTCTTCCCCCAACTAAAGAAGAGATCTTGGCGGAATTGC
CACATATGAAATTGAGCACAATTTTGCATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATG
CTCAATTTCATTTGATTGAATAGTTGACCCAGCTCCTTGTTGTTTGAAGAAAACCTCCGCTTCAA
TTGGTATTTTTTCACGAAAAGCAAACATGAGATAACAAATCCAGTCTTTCACTAAGATTTCGAAT
AGCTGTCCCGAATTCAAGTTGAGTATGTTTCGTCTCTTCCTCGGAGAAAGACGATCAAACAATTC
CCAATCATGGTCCTTGCGGATCGGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGA
TATCTTTCTCTTTGAATGAGATCTCAATTCCAGCGACGGTTTCAT
Right flanking sequence: Indices 69984 -- 70483
CTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTT
TAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAGAGATTTTTTTT
CCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTGATATTGGAAGACCCAAAAGATTCTTC
CACTGTATCATTTCTGGGTCCAATGAAATTCATAGGTATAGGAAGAAGCCCTGTCAAATAGAGAT
TTTTTCTCTCGACCATCTTTCGATTGTTAATACGATATATAAGGACCACTACTACAAATAGTACT
ACACCCTTGATCGTGAAATAGCGATTGCTTGTTGAACCCTGTAAATGTGAATTGCGTGAAAGTAG
GATACTCCAAATTCGGAAGTCAAAAAGTTTTATAAAACGTTCTTGATGGAAAAACATGTGAATGA
AAGATCCCACTGAATTGAATTTGGTCCATGAATCTAAGAAATAGT
Found at i:72679 original size:15 final size:15
Alignment explanation
Indices: 72659--72690 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
72649 TATAAGCCGT
72659 CTTAGCTCCCCGTTC
1 CTTAGCTCCCCGTTC
72674 CTTAGCTCCCCGTTC
1 CTTAGCTCCCCGTTC
72689 CT
1 CT
72691 AGGTTAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.47, G:0.12, T:0.34
Consensus pattern (15 bp):
CTTAGCTCCCCGTTC
Left flanking sequence: Indices 72159 -- 72658
ACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCA
AAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACAC
TTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
AAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAAC
AGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAATTTGGGGGAAATATCTAGGGGTCTCC
CTTTTTGGCACTTTTTGGAGTTTCCTGACTTCAATAGCGAGTGCTATTTTTGTTTGCTTCTTATG
ACCAATAAGAAAGAGCCAAACCCCCTTTTACTTAGACTGGGGCTGGCAGTGCCCTGTCCAAGGTC
TTAGCTCCGGCTGTGTCCCGATACGAGTAAAGGCGTATAAGCCGT
Right flanking sequence: Indices 72691 -- 73190
AGGTTAGAATCCGATACTAAACTCTTAAAGGGGATCATGGTGGCATACGAATCACCTTATCTTGA
TACCATTGCAAGTATAAAGACCAATCCGCATGATAGGTCCATAAACCAGAGACGATTAGATAGCA
CCATCCGACTTCCTTAGCGAATACTAGCGCCATCCTCAGACACTGAAGTCAGTCGGAGATATAGA
TTCGATACAAGCCCCGTAGGGATCATAATCTGGATATCCTCCGTTCAGCCCCTTTTCTAAAAAAT
AGACAAAAGTTGCGGGGGCGAGGCTTTCCCTTTAGGGTTTATTCACGCTTTATGGGCTTTGTTAG
AAGTGGATCTCATAAAGTTATGGAGGAGTGTTGGCATTGAAAATGCTGCAGTGGGTATTAAAATA
CCTAATGATTTACAAGCCTGCGGTTCGGGTAACCCTCCAGCCCCGTTTTCGAAGTGTTCTTGCGG
AACCTCTGGGTACTTATCCTTTAAGAAAGGCTCGAGAGACCTACT
Found at i:79633 original size:24 final size:24
Alignment explanation
Indices: 79606--79653 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
79596 GATAACCATG
79606 ATAATATATTCTATCTATTTCTGC
1 ATAATATATTCTATCTATTTCTGC
79630 ATAATATATTCTATCTATTTCTGC
1 ATAATATATTCTATCTATTTCTGC
79654 TCTTAACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.04, T:0.50
Consensus pattern (24 bp):
ATAATATATTCTATCTATTTCTGC
Left flanking sequence: Indices 79106 -- 79605
TGAAATGGTGCTCCACAAGGGCACCTTCGTTACAGGAAGAGGGGATGATTGTACTTTGAATGGAC
AGAAACTCCAGCTGGTTGACCTGGTTACCTCTGCCAAAGATGCAGAGGATTGCTAAAAGATCGAT
TTGAAGCCAAAAAAACCCACTTTCTTAAGTTCAGATTAAACTCACCCCAGAATATATTTAAGACA
AAATACTTCCAGTTGGAAGCTCCCGCAGCGTCAACAGCAACGGTAATTGCCAGTCCTGTTGTCTC
TCCTGTCGCATCTGTGTAAACTGTCCGTTGCGAGTGAAAGAACTGGCATCAGTCGGATCTGCATT
CGTTTTTAAGGTGCTTTCCTTTGCTTGTTTCAGTCCATACCCTGAGTTGAGTGGACTAACTAGAT
GTTAAGAAACGCCCTGGGCATGTAAACCTCCGGTGGATTGGTCAAATCCTAAAAAAAAATTTCCA
TATATATTATATTCTTCCATTGTGGTATTATCATAGATAACCATG
Right flanking sequence: Indices 79654 -- 80153
TCTTAACAAAAAAAAAGAATCGTTGAGTCCGACTTCTTCTTTTCTTCTGGTGGGAATAATTTCAT
TCTAGATATGTAACTTATTATCTCCAGAGACAACTCTTTCGTTGAACTAAAACCCCTTTTTTCCC
CTTCTTTGATTTTGACTTTTATTTTGATTAATACTTACTTAATTAATACTTATACTTACTTAACT
TAATTAATTTAAATTAATTTAATTAACGGCTAAGCTATTTCATAACCTGAGCTTTCCTTAACCTG
CTGACCGCCTTTGGCGCCTTAGCCTCCCTTTCCCTTTCTTTATCTTTATATCGACAACATAAACA
CAAACTAAATCTTGAATTGCGTAGATAAACAAAACAAAAAGAACCACTTTCGAGCTGAAAGAAAG
AAAGAATGGCTTTTTGGTCCCTTTCGTCCAGTGGTAAGGACATCGTCTTTTCATGTCGAAGACAC
GGGTTCGATTCCCGTAAGGGATAGGTCACTGTGGACGAGTTCGGA
Found at i:124752 original size:18 final size:18
Alignment explanation
Indices: 124731--124773 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
124721 CAACCTTGTT
124731 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
124749 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
124767 GACTATG
1 GACTATG
124774 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 124231 -- 124730
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 124774 -- 125273
GCAGGGCGGTACGCTGCGACCCCTACTCTAATCAAAAGAGTAAAGGCCCCTTAGGTCGCCAAACT
ACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAA
AGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCTGCCCTCG
GCCCGATCATTCAATTCGCTCCGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTAC
CCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAA
CGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTATCGTTACTCATGTCAGC
ATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTTCCG
CTACTGACACTTGAAAAAAAGCTTTCAAGGTCTCGTCGCTTCGGT
Found at i:134073 original size:15 final size:15
Alignment explanation
Indices: 134053--134082 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
134043 CATCTACTAT
134053 ACGTGGCAAAGCTCC
1 ACGTGGCAAAGCTCC
134068 ACGTGGCAAAGCTCC
1 ACGTGGCAAAGCTCC
134083 CTTCTCCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (15 bp):
ACGTGGCAAAGCTCC
Left flanking sequence: Indices 133553 -- 134052
GATCTGAGCACTGACGATCCACTTCCGGTTTCTCCGGATCATCCGGACAGAACGGCGCCTCCGCG
TGTGGACTCGGTAAGCACTTCTTGGCTTCTCTGGCCTGCTTGTGGTCTTTTCTCGACCATCTTGT
TTTATCCTCCCCCTTCCTTATTTGTGGACTTTCACCCCTAGCCCAAGGTGTTGGAAGTGCACTAC
TTTGGGAGATGAGATCAAGCGTCTTCAGGACGAAAATCTTTCTCTCCATGACGAGCTGCTGAGTG
TCCAATTGGCTAGTGAAGACCGAGCTGCAAAGCTTGAGGCAGAGCTCGAAAAATCTTCTTTTGAG
GTCAAACGCTGGTAAGGCATTGCCCGGCGCGTCAACACCAAATTCTCACCAGAGTGGGGAGGAGG
CCGTCATTACATATATGATATTTAAAACCTCTAATTCACGAACTTGAAGTGTTTTAGCTAGAATC
AATGGTGCAAAATGAGTCTCAAAAAGAGAAATTCCCATCTACTAT
Right flanking sequence: Indices 134083 -- 134582
CTTCTCCCTAATTAAAAAGTACACTTCTGAAATACAACTTAACTCTCGTCCTGAATCAAGGCAGG
TCTTTGCTATCTTGTCTTGAATTGCATCTGTCTCAGAAATGGGATTCATTTTTTTGTTTTTCCAG
GATAAAGTCCACCTCCCCCGGGAGGCGAAAGGCGAAGCTTTACGAATTCTCAATACATGGAGAAA
AAGGAAAAAGAAAGAGAGTTGTTTCGCTTGTGTAACGAGTCCTAACTGCTAGCAGTCGACTCGTG
CCTAAAGCATGAAATATCATATTTTTATTCCGCTTTTTCAGTAAGCGAATGGTCTCCGGGAGAGA
GGGAAGCGCTATTTTAGATGGCAGTGGGTTGGGGTGAGGCAGCAAAGTCATCGTAGTAGTTGCTA
GCCCCGTGAAGTTTCGAAGGGATTTTATTTCTTTGGTTATAGAACCCATTTCTTTTTCCGGTGTG
ACTAGGGCCAGGACGATCGGATGGCCATTCCGAAGTGATCCATTA
Found at i:150419 original size:21 final size:21
Alignment explanation
Indices: 150395--150458 Score: 128
Period size: 21 Copynumber: 3.0 Consensus size: 21
150385 GTTAAGCAGC
150395 TTTGGAATTCCTTGCTTAAAG
1 TTTGGAATTCCTTGCTTAAAG
150416 TTTGGAATTCCTTGCTTAAAG
1 TTTGGAATTCCTTGCTTAAAG
150437 TTTGGAATTCCTTGCTTAAAG
1 TTTGGAATTCCTTGCTTAAAG
150458 T
1 T
150459 AAGTAAGCTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (21 bp):
TTTGGAATTCCTTGCTTAAAG
Left flanking sequence: Indices 149895 -- 150394
CTTCTATGCTTTCTCAAGAACAATAGCTAAGGGACCTGATACTACCACTTGGATCTGGAACCTAC
ACGCAGATGCTCACGATTTCGATAGCCATACTAGTGATTTGGAGGAGATCTCTCGAAAGGTATTT
AGTGCCCATTTCGGTCAACTCTCCATTATCTTTCTTTGGCTGAGTGGTATGTATTTCCACGGTGC
TCGTTTTTCCAATTATGAAGCATGGCTAAATGATCCTACTCACATTGGACCTAGTGCCCAGGTGG
TTTGGCCAATAGTGGGTCAAGAAATATTAAATGGTGATGTAGGTGGGGGTTTCCGAGGAATACAA
ATAACCTCTGGTTTTTTCAGATTTTTCGAGCATCTGGAATAACCCAACAAACAATAGGTCGGGAA
TTTCAATCTGGAATGCGGGCTCATTCGAAGCGTCTTCATACTCAACAGCCAGCGGCTAGCTTTTA
TGATTGTGTTTTTCCTCGTTTTGATTGACCTTTTAGTTAAGCAGC
Right flanking sequence: Indices 150459 -- 150958
AAGTAAGCTGTTTTACACCGCGCCTCCCCCTGCGGTTAGTCACAGGTTCATCTCTGATTCAGGGC
GCCGAAGGCAGCAATTTCAAGTATGCAAATGCATCAGTTGTTCTTGTTTGGGGGTGACACCGTTC
GGTGCCTATTTTCCGAATACGGGTTTATTTCTTAGTGACTCTCTTTATGATATATGAGTATCACT
TCCCAACTAGATCCACTCTCATTGAAAGGCTTTCGTTCAGAACCTGACTTGAGTAGATCTGTATG
GATTGCCTTGGAATTCAATCCACATCATTAGTTGAGTTATTATAGTCCCCCTATATCCCGATTCG
CGGCTATTATATTCCACCTACGAAATAGAATTGTCCACTGAATAGAAATGTCACAACAAGGTAGC
CGTCGCGAGGAAGTGGGCAGTAGGGAAGACTCTAACCCTGGGAGCCAGGGCCTGCCCATTCTGCA
TTTGCGGCTTATAGCGCAGATGCAATCATACAAAAAAATTATGAA
Found at i:179063 original size:18 final size:18
Alignment explanation
Indices: 179022--179064 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
179012 TTAAAAATCG
*
179022 AATAGAAAATAGATAATA
1 AATAGAAAATAGATAAGA
179040 AATAGAAAATAGATAAGA
1 AATAGAAAATAGATAAGA
*
179058 ATTAGAA
1 AATAGAA
179065 TTCGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.21
Consensus pattern (18 bp):
AATAGAAAATAGATAAGA
Left flanking sequence: Indices 178522 -- 179021
CAGCTTCTGTCCCTAGTTTATTTTGGGCTGAAGCTGTTCTGACTGCCATATGTTTTTTGAACTGA
ATACCTTCCTTTGGTCTGTCTCTTTTTGAGAGAAGATTGTCTACCCCTATGAAGAGCTTCGAGTC
TATCGGGAGAGGATGTGGCCCCCGCGGCTTCGTCTAGAGCCGGGCGTCCAGCCGTGTAGGAAGAC
TCGCCCTAGCCACTATAGTATAGCGACCCCTGAGAAGCACCCTCCTCCGCCCACTTACCCTTTTC
TGTGTGCCCAAAAGCCCGCCCGTCCGGTTTATGAGATTCCCTCACCCAATCTCATGAGAACCAAG
CCCAGCAGGCCCCGCCTTAACCTGCCCCCAGACAGCCAGCCCTCACCAGGCTGCTGGCATTGCAA
GCAAATAAGGAGCCTCCGCCCGTTTGAGTCGTTGCGAGCCGGAAAGCGTACCGGCAGTTTGAGTC
GCGAAGGGGCCGCTTGCTATTCTAATTTTTTCGAATTAAAAATCG
Right flanking sequence: Indices 179065 -- 179564
TTCGAATTTTTTCTATTAAAGCTATAAACTAATAAAAAACTTTTTTGAAAATCCAATTGTTCCTT
CCTGGGAAGAGGAAGAAGCAGATAGAGCAAAGGCCTCCTCTTTATTTCCGCCCGCTCTTCCCGAA
GTGAGCGAATTGCATGTAGAGATCCATAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCA
TAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCATTCACGAGAGCAACCCTGAAAATC
CATTAGAGCCGGTCTCTCTCTACCACGAGTCACTCAGAGAGTATTGGGAAACACCAACTCGTCCG
CGTTGGAGAGTGTGGGTATGGATCTATTAAAAATAGATCCTACCTAAGGTAAAGGCCCGGGGGAG
CTCTTAGTTAGCTCACACTAACTAAAGTGGGTTATTTTAAATCATAATTAAAAAAATGAAATTTT
CTGTTAAAGAAAGTGTTTCCAGAAAGATTTTATTTGCTGTAGGCT
Found at i:189084 original size:14 final size:14
Alignment explanation
Indices: 189065--189092 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
189055 TTCCAGTGGA
189065 CTATATAAACATGG
1 CTATATAAACATGG
189079 CTATATAAACATGG
1 CTATATAAACATGG
189093 ATAGCTGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
CTATATAAACATGG
Left flanking sequence: Indices 188565 -- 189064
AGTTCACACATTTGATCGATTCAAACCTGCTGCTTAAAGAGCTGCTTGCTACCACTTTCGAATTA
CACTAATTACATTAGAAAGGGGTAGCCCAAGACAACTGTGGCATGCCCTGTTTACAGCTGCTTAT
CCTCTTCTGTCTTTCCGTCATCTCAACCTCGCACCTAAGCATCACGTTCCTAGGGACAGAGACCT
TAAAGCTCTAAGGCAATCATAGTAATGCCAGCATGGTTACATCTAACTGCCTACTGAGCACTTCA
AAGTCACCTGATTTGGCACCAGCCGGAGCGGGGGAACCATCCATGAGAGTCAGAATAGCAGCAGA
AGGGAGCGGAAAAGATTCAATCGATCCGGCAGTAGGCAAGCGGGACAATCCATACCCTCGGCAAA
TAGAGTTACCTCAGCCGGGACCTCTGTCCTTTCTTCTGTTAGCTATCTCAACTCTTCGAGTCGAG
TTCTAGTTGCTATAATCAAATTCTCCGTGAGTTCGTTCCAGTGGA
Right flanking sequence: Indices 189093 -- 189592
ATAGCTGCGCCTTATGAGGGACCTTATTATGGGCTTCTTAGTTGCTTTGCTTATGCCAGCTAGCT
TTTGTAGGCTTGGTTGCTTCTTTCGGCTTGTACGCTCTGTCATAGGCTTGCTTCCCTCTAAACGG
GTCTTTCATAAATAAGGGTATAGTCTCACTCCTTCTATCGAGGGGTTTTCCCTCTCTTTGAATTT
CGCTTTCTGCTTCAAGTTCGCCAGCGATTGAAATCTTTCTCGACTCACAGATAAGGGATGTATGA
TTCCCGAACCTTAACAAAAAGGATTGAGCTCCGCGCATCCCTTGATCTCCGCCTAACCGGGGCTA
GGCTAGTTTCAGTGTTTGGTTCCTGACTTGATGGGATGGGAGTCACAAGGCTTTAAAGAAGGCCG
AGGAGCGGGGTTGAACGAGATTCGTTTTGGTTTTTATGCTTTGACCTTGCTCATAGGAAGGGTTT
TAGGCCTTGAAAGAGACCTTGTTGATGAAGCTAAGGTGATTTGAT
Found at i:193839 original size:16 final size:17
Alignment explanation
Indices: 193811--193850 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
193801 GCCTTATATT
193811 TTATTTATTTAAATTTA
1 TTATTTATTTAAATTTA
193828 TTATTT-TTTAAATTTA
1 TTATTTATTTAAATTTA
193844 TTATTTA
1 TTATTTA
193851 GTAAAGTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTTATTTAAATTTA
Left flanking sequence: Indices 193311 -- 193810
ATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTC
GATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAATTAAGAATCAGAATAGGTCCAGTCCA
GGGGACAAATCAATAGGAAATGCTATTTTCTTTGTAAGAATAAGAAAAAACTTCTATGAAATGAA
AGAGTTTCGCGGGTGATCATCGGATATGATTGATAAATAGGAAGAAGTGTTATCGAACGATTTCC
TGAAATTCTTCCCAGTATGGAATGAGTAAAGAATCGAGCTACAAGTCTCAATCTATACAAAACGT
ACTGGGTTTTTGTGTTTCTTTCGGTTGGTTTCATTGATAGCGGAAGAGCCTTACTCTATAGGGGC
GCGAGCGCTTTACTAAACTAATAGGGGCAAAAAACAAACGTAAACGTAATAGGGCTTCGCTTCTT
CCCCCTTATTGAATTGAAAACGAAAGCGCTAACGCGCCTTATATT
Right flanking sequence: Indices 193851 -- 194350
GTAAAGTAACCTTTCGCGCTAGACGCTCACGTTTTTTGTCTGGGTGGAAGCTGGCGGCAGGGCTT
GCTTAACCGGATACACGGAATTGGGATCTCTTTCGCATGCAACTATTTCTATCGCGCGGGCTTAT
TATTTATTTCCATTTCCTTTGAAACCCTTTTCCTTTGAAACTGTTTTTGCTCATAAGACTGTTTT
TGCTCATAAGTAAGTAAGCGTTGGTAGGAGCGGCGGGATGATGACGAGTATATAAATCACTAAAG
ACCAAAAATAAGAAATGGCAAGAAAAATTTGATATCGATGGAGGAAATAACGATGTGGAAAACAG
GGCGGGGATTCTCTACAATGACCATCGTAGACCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCG
CCTTTGTTTTGGGTACAAAATGTCACGGGTCCCAATCCTGTCATTCCTACCTATTACCTCTCCTC
TGGGCAGTAACGAAGGACCCATTGAAATCGATTCAAATTTGGTAC
Found at i:193855 original size:16 final size:16
Alignment explanation
Indices: 193820--193855 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
193810 TTTATTTATT
**
193820 TAAATTTATTATTTTT
1 TAAATTTATTATTTAG
193836 TAAATTTATTATTTAG
1 TAAATTTATTATTTAG
193852 TAAA
1 TAAA
193856 GTAACCTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TAAATTTATTATTTAG
Left flanking sequence: Indices 193320 -- 193819
CAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCT
AGTCCTTGGGAACAGCGTAGCGACGGATAATTAAGAATCAGAATAGGTCCAGTCCAGGGGACAAA
TCAATAGGAAATGCTATTTTCTTTGTAAGAATAAGAAAAAACTTCTATGAAATGAAAGAGTTTCG
CGGGTGATCATCGGATATGATTGATAAATAGGAAGAAGTGTTATCGAACGATTTCCTGAAATTCT
TCCCAGTATGGAATGAGTAAAGAATCGAGCTACAAGTCTCAATCTATACAAAACGTACTGGGTTT
TTGTGTTTCTTTCGGTTGGTTTCATTGATAGCGGAAGAGCCTTACTCTATAGGGGCGCGAGCGCT
TTACTAAACTAATAGGGGCAAAAAACAAACGTAAACGTAATAGGGCTTCGCTTCTTCCCCCTTAT
TGAATTGAAAACGAAAGCGCTAACGCGCCTTATATTTTATTTATT
Right flanking sequence: Indices 193856 -- 194355
GTAACCTTTCGCGCTAGACGCTCACGTTTTTTGTCTGGGTGGAAGCTGGCGGCAGGGCTTGCTTA
ACCGGATACACGGAATTGGGATCTCTTTCGCATGCAACTATTTCTATCGCGCGGGCTTATTATTT
ATTTCCATTTCCTTTGAAACCCTTTTCCTTTGAAACTGTTTTTGCTCATAAGACTGTTTTTGCTC
ATAAGTAAGTAAGCGTTGGTAGGAGCGGCGGGATGATGACGAGTATATAAATCACTAAAGACCAA
AAATAAGAAATGGCAAGAAAAATTTGATATCGATGGAGGAAATAACGATGTGGAAAACAGGGCGG
GGATTCTCTACAATGACCATCGTAGACCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCGCCTTT
GTTTTGGGTACAAAATGTCACGGGTCCCAATCCTGTCATTCCTACCTATTACCTCTCCTCTGGGC
AGTAACGAAGGACCCATTGAAATCGATTCAAATTTGGTACAAAAA
Found at i:194059 original size:22 final size:18
Alignment explanation
Indices: 194020--194055 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
194010 TTCCTTTGAA
194020 ACTGTTTTTGCTCATAAG
1 ACTGTTTTTGCTCATAAG
194038 ACTGTTTTTGCTCATAAG
1 ACTGTTTTTGCTCATAAG
194056 TAAGTAAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
ACTGTTTTTGCTCATAAG
Left flanking sequence: Indices 193520 -- 194019
GATCATCGGATATGATTGATAAATAGGAAGAAGTGTTATCGAACGATTTCCTGAAATTCTTCCCA
GTATGGAATGAGTAAAGAATCGAGCTACAAGTCTCAATCTATACAAAACGTACTGGGTTTTTGTG
TTTCTTTCGGTTGGTTTCATTGATAGCGGAAGAGCCTTACTCTATAGGGGCGCGAGCGCTTTACT
AAACTAATAGGGGCAAAAAACAAACGTAAACGTAATAGGGCTTCGCTTCTTCCCCCTTATTGAAT
TGAAAACGAAAGCGCTAACGCGCCTTATATTTTATTTATTTAAATTTATTATTTTTTAAATTTAT
TATTTAGTAAAGTAACCTTTCGCGCTAGACGCTCACGTTTTTTGTCTGGGTGGAAGCTGGCGGCA
GGGCTTGCTTAACCGGATACACGGAATTGGGATCTCTTTCGCATGCAACTATTTCTATCGCGCGG
GCTTATTATTTATTTCCATTTCCTTTGAAACCCTTTTCCTTTGAA
Right flanking sequence: Indices 194056 -- 194555
TAAGTAAGCGTTGGTAGGAGCGGCGGGATGATGACGAGTATATAAATCACTAAAGACCAAAAATA
AGAAATGGCAAGAAAAATTTGATATCGATGGAGGAAATAACGATGTGGAAAACAGGGCGGGGATT
CTCTACAATGACCATCGTAGACCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCGCCTTTGTTTT
GGGTACAAAATGTCACGGGTCCCAATCCTGTCATTCCTACCTATTACCTCTCCTCTGGGCAGTAA
CGAAGGACCCATTGAAATCGATTCAAATTTGGTACAAAAAAAAATCCTTTTCTTTACAGTCGTAT
CTACTGTGATAATAAAGCGCTCTTAGTTCAGTTCGGTAGAACGTGGGTCTCCAAAACCCGATGTC
GTAGGTTCAAATCCTACAGAGCGTGATTCTGTGTTCTTGTTAGTTGCGCTAGGTCGAAAATTAAT
ACCGAATTAAAATAATTAAACCAATCTAAATTTGACCCCCCGAAA
Found at i:195244 original size:17 final size:17
Alignment explanation
Indices: 195224--195258 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
195214 GAGTTGACTA
195224 AACTAATATACGTATAT
1 AACTAATATACGTATAT
*
195241 AACTAATATATGTATAT
1 AACTAATATACGTATAT
195258 A
1 A
195259 TAGTATATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.37
Consensus pattern (17 bp):
AACTAATATACGTATAT
Left flanking sequence: Indices 194724 -- 195223
GGGGAGGTAATATCTATTCTTAAATAGTGAGACTATAAATCTCAATGACCAAGAATTGGAAATTG
ATACGTTAAGGAACTATAGAATATATCAACTATCACAGAAAGGTTTTTTATGAATTGTTTATTTA
ATTAATTTTAAATAAGTCGGATCTTGCTCAGACCAATAAATAGAGCTGAGCTTATAGTCAAAGCT
GCTAGTAGAAAACCGAAATAACTAGTTATAGTAGGCATGAAAAGGCTAAATGAAATATATTCTTT
TTCTACATATGTTTCGAAAGCACTTCCCTAAGTTTCCATTTTTGAAAGATACTAGGATAGGCAAA
AATACCAACCAATTGAAAGGATAAGTTCAATTGAAAATTTTTGATTCATATAGATGATATTAAAA
AAAATAGAGTAACAAGTAACATAAGTAAGAAATCCATTAATCATCTGGGACATTTACGCATCCCT
CAATTTTGAATCAACGGATTCATTGGGCAACTCTTGAGTTGACTA
Right flanking sequence: Indices 195259 -- 195758
TAGTATATGTATATATAGAATATTTGAAATTCTAAATAAAGTAAGTAAGTAATAATTACGAATTT
CTTTTATAACTTCATAAACTTTCTTTTGTTTTGTAATAAAATTTGAAAATTAGGGAGAAAGACGA
AATAGGATGGCAGCCAAGAGCATGTCCCAAGTGAGATCGAAGGTGAGCACCATCCGGAGCGGAGG
CAGTTCTTTCCAGGAAACACAGACTTTCTTTCAAGAGTTCTAGTCGCGCCTCTCCACTCTAACAA
AGTAGTCCATCTGAAAGAAAACGTGGCTTTTCTATACAAATGGTGCCCATTCGGCCAATGTTGAG
TGTCAGGCGAAGCTACCCCCGTATCAATGCGACCAGGGAATCGATGGCACGTACCGTTGTCAGTT
ACCAAGTAAAGAGAAATCCGCAGCAAAGGAAACTACCTATCTGACTTGCTAACCGCTGTGTCAAT
CATAGGTTATGATCATCTGAAATAAAGTGAGTGGGCACATGAAAG
Found at i:195265 original size:15 final size:15
Alignment explanation
Indices: 195247--195281 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
195237 ATATAACTAA
195247 TATATGTATATATAG
1 TATATGTATATATAG
195262 TATATGTATATATAG
1 TATATGTATATATAG
*
195277 AATAT
1 TATAT
195282 TTGAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (15 bp):
TATATGTATATATAG
Left flanking sequence: Indices 194747 -- 195246
ATAGTGAGACTATAAATCTCAATGACCAAGAATTGGAAATTGATACGTTAAGGAACTATAGAATA
TATCAACTATCACAGAAAGGTTTTTTATGAATTGTTTATTTAATTAATTTTAAATAAGTCGGATC
TTGCTCAGACCAATAAATAGAGCTGAGCTTATAGTCAAAGCTGCTAGTAGAAAACCGAAATAACT
AGTTATAGTAGGCATGAAAAGGCTAAATGAAATATATTCTTTTTCTACATATGTTTCGAAAGCAC
TTCCCTAAGTTTCCATTTTTGAAAGATACTAGGATAGGCAAAAATACCAACCAATTGAAAGGATA
AGTTCAATTGAAAATTTTTGATTCATATAGATGATATTAAAAAAAATAGAGTAACAAGTAACATA
AGTAAGAAATCCATTAATCATCTGGGACATTTACGCATCCCTCAATTTTGAATCAACGGATTCAT
TGGGCAACTCTTGAGTTGACTAAACTAATATACGTATATAACTAA
Right flanking sequence: Indices 195282 -- 195781
TTGAAATTCTAAATAAAGTAAGTAAGTAATAATTACGAATTTCTTTTATAACTTCATAAACTTTC
TTTTGTTTTGTAATAAAATTTGAAAATTAGGGAGAAAGACGAAATAGGATGGCAGCCAAGAGCAT
GTCCCAAGTGAGATCGAAGGTGAGCACCATCCGGAGCGGAGGCAGTTCTTTCCAGGAAACACAGA
CTTTCTTTCAAGAGTTCTAGTCGCGCCTCTCCACTCTAACAAAGTAGTCCATCTGAAAGAAAACG
TGGCTTTTCTATACAAATGGTGCCCATTCGGCCAATGTTGAGTGTCAGGCGAAGCTACCCCCGTA
TCAATGCGACCAGGGAATCGATGGCACGTACCGTTGTCAGTTACCAAGTAAAGAGAAATCCGCAG
CAAAGGAAACTACCTATCTGACTTGCTAACCGCTGTGTCAATCATAGGTTATGATCATCTGAAAT
AAAGTGAGTGGGCACATGAAAGGTATTTCAACAAAGACGGTACAC
Found at i:196720 original size:23 final size:23
Alignment explanation
Indices: 196693--196737 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
196683 CTCTCCTTTA
*
196693 CAGTCGAGTAAGTAAACTCCTAT
1 CAGTCGAGTAAGTAAACACCTAT
196716 CAGTCGAGTAAGTAAACACCTA
1 CAGTCGAGTAAGTAAACACCTA
196738 ACGTCTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (23 bp):
CAGTCGAGTAAGTAAACACCTAT
Left flanking sequence: Indices 196193 -- 196692
TGTTTAGTTTACCTTGGATATGTAATATCACCTCAGATATCCTATACTATTATATTATATTACTG
CTCGTACAACCTTGATGTCATCGAGACTAAGATATGAGACTAGTGAAATAAGACTAGTACTACTC
CCTTCTTCCACAGTTGTGTAACTTCCTTGCATTGACAGCTACCATCTCTTCTCTTGACTATCCTC
GAGTGCGGTTGTATTCACGTAGTGAAGACTCTTTCCAGATATTATAAGAAAGATATTTCTGGGAT
TCTAGAATTTCGATTCTGTACTACTAACAACTGACCCTGCGGAACGAACTCACAACTCATTGATT
CCATGGCTGTATCCACTAGCATCACTGTGCCCACGTGTTAAGAGATATATCTTTGCAGGAAGATA
GTGAACGGTACAACCGAATGCTTTCTATCAGTAATGGGGATATTTACAAGGTCATGAAGAAGTAG
AAGTACGAGCCCCCTTTCTACATTAGGTACCTCTCCTCTCCTTTA
Right flanking sequence: Indices 196738 -- 197237
ACGTCTGAATTTCTTCACCTTTGTTTCACAACCTCCCGATGAGCTCTTTCTGAGATCAAGTCTAA
GGCGCTTTAAAGCGCAGTAATAGGAGTCTCGTGTATGAACCTATCGGCGAGTACAAAGAAGGGTT
TAGGTTACGAGTGTTATGCCTTATTGGTATCCAATGAGTGAGACTCTTACGTATGAGACTATTAT
GTATCTAATGAACGTATGTGTCCTCACACTTACTGTTATGTTTCACTGAAAGCCGAGAGGAAGCG
AAGTGGGAAATTCGATGAGTTGCTAAGCGGAAAGCGAAGAGATGACTTGTTGCTGCTAAGCGGAA
TGCCAGTCGAGCTATTTCACCCATGTAATCCTCCGCAACTGCGTTGTCTCAATCCAATCGGTTAG
TTAACGCGTAGTTATATAGCTTGACTTGTTTCTTTCATTACCCCTTGAAGTTATTGCCGCTAAGC
GCTATAGCTGTTTAGATTGTCGATATTCCATGTGGAAGAGTAAGA
Found at i:208219 original size:34 final size:34
Alignment explanation
Indices: 208176--208264 Score: 169
Period size: 34 Copynumber: 2.6 Consensus size: 34
208166 GGTTAATTGA
*
208176 AAGGTAAGGATAGCGTGATTGGCCGATTGGTTGG
1 AAGGTAAGGATAGCATGATTGGCCGATTGGTTGG
208210 AAGGTAAGGATAGCATGATTGGCCGATTGGTTGG
1 AAGGTAAGGATAGCATGATTGGCCGATTGGTTGG
208244 AAGGTAAGGATAGCATGATTG
1 AAGGTAAGGATAGCATGATTG
208265 ACTGGTTGCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 54 1.00
ACGTcount: A:0.28, C:0.08, G:0.38, T:0.26
Consensus pattern (34 bp):
AAGGTAAGGATAGCATGATTGGCCGATTGGTTGG
Left flanking sequence: Indices 207676 -- 208175
AAGACACCTACGTTACACTAACAGGAGCGCGCTTCTTTATTCAAAACAAAAATACATTATGAAAT
GAACCCACATATAAAAGTGGGCTGGTCTGCTCATTATTTGTGTTCGTACATTTATTCATTATTGC
AATACAAATAACACCTCCACTATACTAGTGATGGAGGGGATTCGCGCCGGATGGAACAAGGCGTT
TTGAACCATATACTACTGTTGCTGGAATGAAACGCAGCCTTGGAACATAATTATGCTGCTTGCTG
GGCCCTGATGGTGGAACTGGCATTTTTTGGGGGAAGAAAGCGGCCCCCTTTTGCGGCAGAGTGGG
CAGCATCGCTTTCCCTCGTGTAGCTATGATGCCATTCAGATCCATAAGAACAAGAAGAATAAAAA
GTATTTCGCGGATTCTTGCCATCACTGGAAAACAAATTGAGCTGTAGGCATCAAGGTAAGGGACC
GAGATTATATACTGCTGCAGAAGCGGAATCGAAGGGGTTAATTGA
Right flanking sequence: Indices 208265 -- 208764
ACTGGTTGCGGGTCCTTTGGATCATGGGCCACAGCTACTTGGGTAGAGACCGCTGAACATCATTT
GGACAGGCCGAGGCTATATGGGCTTAGGCCTTTTGATGGCTGTCATTTTCTGGGCTATTTGGAAG
GGTTAACTAATTATGTATATAAGCAGCCAAACAAGATCGGATGGAATCTAGCCTGACAAGCGGGC
AATGGTTGCAAGCTACCTCGATCTATTCTATGGTGAGTAAAGCGCGTCTTGCGAGTCAAGAGAGA
GATCGGATCAAGATGCCGTGGGCCCACAAAACCACAAAACCTTCGCGCGCACCGACGCGCCTAGG
GAAGCAACCTATTCGACGTCCGAACCGATTTCTCAACTTGATGAGCGATCCGCGCTTGGAAGCAA
AGTGGCTATAGTTTGCTGTACTTCGCGCGCAAGAAGAGCGATCGAAAAACAGGAGGGCCCAGTGA
GCCCACTGCAATGGCACCGAAATGGGGTCTGTGGGACGAGAACCC
Found at i:209803 original size:17 final size:17
Alignment explanation
Indices: 209781--209814 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
209771 TTATTTTAAC
209781 TAAGCGGTAGAGTCACG
1 TAAGCGGTAGAGTCACG
209798 TAAGCGGTAGAGTCACG
1 TAAGCGGTAGAGTCACG
209815 CTCTTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.35, T:0.18
Consensus pattern (17 bp):
TAAGCGGTAGAGTCACG
Left flanking sequence: Indices 209281 -- 209780
TTAACGAACCGAAACCCCACCAGATCCCAATCAGAGAGGACAGCATGATTTCAAAAAGTATGTGC
TTCATTTTATGGTATTCAAAATGGGAAACAAAAGAAGGAGACTCCTGCTGGCAATTATATCCTAC
TCTATTGCCCGGAAAGATGAATTGATCGATTCATCGGGTCGGGACTGACGGGGCTCGAACCCGCA
GCTTCCGCCTTGACAGGGCGGTGCTCTGACCAATTGAACTACAATCCCCAGGTCTCCATTTTTAT
TTTTTCTTTTTTATCACATTCGAACCATTTTGTTTCGCCGTGTTGTAACAGAGACACGAATGATA
TACTATAAATATATTATTATATAAATAATAAATAAATTTATATAATATAATAATAATTATCATAA
AAAATCGAAATAAGAATATATTATATATTAATATATTTATAAATGCAAATGCAGTAAACTCATAG
TGGGCTAATTCATGAATTGAATCAAATGGACCCTTTTATTTTAAC
Right flanking sequence: Indices 209815 -- 210314
CTCTTTAAACGCCCTAAGAAATAGGCGTAAGTCATCGGTTCCAATCAGATCCGGAAAAAAAGTAA
GTGCGTGGTGAATCATGACTATGACTATATAAGCTATTCTGATATTAAGATTCGATATAGATGAA
ATCGTGAAAGCGGACCTTTGATTTCCTTGGACCACGCAATAATTCGCCGCCCGATTGAATCTTCT
TGTTCCTGGATGCTCCATAGAAATCCATCGCTATTCCTTTCTTCCACCGAGAAAGGTTCATTCCG
AATCACCTCTCTCTTTTTTTAATTTTTTTTTTCGTTATGGTAATGCAATGCAAAAGAGGTCTCGG
AAATCGGGTTGTTTCTGATGATGAAAAGCGCTTTTTTTATGTTATGTGAAATTGATGAAAACCCG
ATATTTAATATTTAAAGGTCGCTAAACGACTGTCGGTATCAGATGGTAAGATACCTATGGTCGGT
ATATCTTTGAAAGCTCAGACGGAGAGAATTAACGGACTCTTCGGG
Found at i:221518 original size:19 final size:19
Alignment explanation
Indices: 221494--221531 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
221484 TCTGAGGTGT
221494 CCTTATCTTTCTATCCTGG
1 CCTTATCTTTCTATCCTGG
221513 CCTTATCTTTCTATCCTGG
1 CCTTATCTTTCTATCCTGG
221532 TTAGAACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.11, T:0.47
Consensus pattern (19 bp):
CCTTATCTTTCTATCCTGG
Left flanking sequence: Indices 220994 -- 221493
GCAGCCCTAACAGCCCTCCACTGCTTCCCCAAGACCTTATGAAAAATTAAATGACCATGCAAAGA
AAAAAGAACTATAATATCCTATGTCTAGGACTCTTCTTGATTCGTAGGAGAAAGAAAGTGACGTG
CAAGAACCATAATTCCCACTTTAACCCGCTTTGCCAGGCTATTCCACGAAGATCCATAATCGGAA
AGATAGATCAAGAAAGAACGTAGCCTCGGCCACCGTCGAAGTTTAGTAGTCTTTTCCAGGAAGCT
GAGAATTGTTAGGAAGTCTTTTCATCTCCTGAGTTGTTCTAATGCAAGGGTGAGCGAATCTAGCT
AAATTGTAGGCCAGCTTAGCTTCTTGCCAAAAATAGAGACCGCGGAGAAACCTATCCGTATTAGT
CAGGCAGTGAAAGCAATAACAGAATTTCCCGTAGTTAGATCATCCAGTTTTTCATTCTCATGCCA
TCGGTACACTAAAAAATGGGAATTCGTTTAATTGGTCTGAGGTGT
Right flanking sequence: Indices 221532 -- 222031
TTAGAACATGGGGCATTAAAGCGCCTGGCAAGGCTTTCTTTTATAAAGTAAATCCGCTGAATGAG
CTGATCTCGCCAGCTCTATCTGAGTAGTTTGGTTGGTCAGAGGCACGAACAAGTGAGTTTGGCGT
TCTGTTTTGGGTAGCTATAAATAGGAGCATTCTTTCTTTCGTAGTCGGTAGGGTGAGCGAACTGC
CTCCCGTCTCAGTTGCTGCATCTGCTGCTATTGGTATTGATATGATATAAGGGGTACAACTAGCC
TTCTTCTGACAGGTTGAATCTTAAAAGACTACGGCATGACAAAGCAAACAAAAAATTCGCCAAAA
ATGATAGAGAAGAGAAGAAATAGGCTCAGACGCACCCCATCCATCCATACGACACGATAGCTTCA
GCAAAGAGTATAAGAGCCGTTGAATCTCAATGTCGGCGGTTTGCCTTGCTGTTTCTTTGTCTCGA
GGCAACGAAGTAGCTGAAACGAAGGGCAGTTTACTTGCCTGGCTC
Found at i:233987 original size:24 final size:24
Alignment explanation
Indices: 233960--234008 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
233950 AGAGGCTTTC
233960 TTCTATATTTTTCCTATTTTCTTA
1 TTCTATATTTTTCCTATTTTCTTA
233984 TTCTATATTTTTCCTATTTTCTTA
1 TTCTATATTTTTCCTATTTTCTTA
234008 T
1 T
234009 ATGTCTCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (24 bp):
TTCTATATTTTTCCTATTTTCTTA
Left flanking sequence: Indices 233460 -- 233959
AAATCATTAGAATTTGCAGCGAAAGGATTAACAAAAGTGGAATTACTCCCTAAAGAACCAGATGA
ACTAGAAGAATTATCGAATCTAGGAGCCGCCGGAAAGGGTAACATAATAAGGTTTTTGAGACAAA
TGATTCCCCCCAGACAGCTTAACTCCGTCAAGCCTGTAGGAGTAGTTAAGATTTTTAGTGAGTTG
TTTGTGGTTGGTTGTTGACCAACAAAAGCATGGGAAAGAACACTAACGAAGATGATCCTGGATTG
GTCACCTGAAGAAAGTGGACATCGACGGCATACTCTTTTGCGGAGAAAAAAAGAGAAAGAATGTC
TATGAAGAGAGATTCTCGTAGGAGCAAGCGGAGGCTCGAAAGCCGGAGCGCGCGAGCGCGCTTTC
CGTTTTCTCGATTGGCTCTCGGAAGATAGATTGACTTAGAAAGGTACTCTTCTTCCGCTTTTGCA
GAAAAGGCTTTCTCTTTACTTACGAATATTAGATTAGAGGCTTTC
Right flanking sequence: Indices 234009 -- 234508
ATGTCTCCTTCCCTGTTGTCGTCCTTTCCTTCTTAGCGCGTAGTGGCTTAATTCGTTTTTCAATT
CATTCCCATCTCGAAAAAAGTGGTTGAATAAGAGTGAAAACAAACTTCCTCTTACTAAAGGCAAG
AAAGCGGGACTATTCTCCTTTCTATCCTTTGATAGCAGTCCAAAGAGAACTCTTTTTTCTATAAG
AATAGAATAGAAGGGAGATATACAATATCACCTCTTCTACAAGGAAGCATGATCTTATCCGCCTT
TTTCTTATATCTTATATATAGGATAGCACCTTCTCTTCCTACTACGCGGTAAGATGTTTCATAGT
ATGCTTTTGTCGGTACGGAAAGCGAGTCTTCTTACCCAGATTCTTAGCCCATGCAGCGGATTCTG
TAAGAGCAAGGATAGAAGATGAAGGAGGGGAACCACTTCTCTTAGAGTGGGGTAGGTCGTCGGGC
ATACCGAACCGTTCATCGGATAGGCGGTAGAGAGAGGCATAAGAA
Found at i:239385 original size:20 final size:20
Alignment explanation
Indices: 239362--239406 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
239352 TAGGGGCATA
*
239362 TCTATCCGGATAGAGGATAG
1 TCTAGCCGGATAGAGGATAG
239382 TCTAGCCGGATAGAGGATAG
1 TCTAGCCGGATAGAGGATAG
239402 TCTAG
1 TCTAG
239407 ATCGATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (20 bp):
TCTAGCCGGATAGAGGATAG
Left flanking sequence: Indices 238862 -- 239361
CACCTACTCAAAACTCAGAGGGGATGCCGTCTACTACTAAAATCTCGGTTTTTGCAACAGTTGGG
TTCTTCTATGCAGGAAGAAGACTTAGAAAGAACAAAGAGGTTTGGATCCGAAAAAGTATGCTTAG
GCAGTTCCTTTGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATCCCTATTCTTA
TCGAAGAGAAGGAACGAGAAAACCCTAAATCTTCCTACTCGAACAAGAACTTTATATAGTAATTC
GACCTCTTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATTGAACTAC
CTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATA
GGTCACATCCCTCACGACATAAGATTGAAAGATCTAAACCTTCCTCTTCGGAGCGGAAACGGACA
TGGCCAAAACATATAAAGATCGGCGTAGTCACTGATAGGGGCATA
Right flanking sequence: Indices 239407 -- 239906
ATCGATTCATAGATAGATTTCTATCCATATAGATAGGTATCTCCGTGGGTAGAGATAAAGATAGG
GATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTTCTTGATTCTAATTGATTGCCTTTTTT
TTTGACGACAAGTTTTAAATCGGCTGGAAACATCGTTTTTCAATTATTAGGTTCAATTATTAGGT
AGGAGCGTAGACGAGCGGGTAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGA
AGTGGAAGACTGCTGGCCTGAGAAAAGGCGGCCTCTCCCGGGCCCAATTTATCTTCTTTCTTTTT
GATTTCGGGTTTATTTCTTTTTGATTTAGGGCCCCCAGAAATAAAAAAGGTAGGGGAGAAGCAAT
CCTTACCTTACTTACAGTGAAAGAAGCAAGCTTAGCTTTCGGAGTTAGAGCATGGTAGTTCGTAG
GAGATTGATTCGTTTAGGGTAAACGAGCTCTTCTTCTTTGAGTTG
Found at i:239593 original size:13 final size:13
Alignment explanation
Indices: 239575--239601 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
239565 AACATCGTTT
239575 TTCAATTATTAGG
1 TTCAATTATTAGG
239588 TTCAATTATTAGG
1 TTCAATTATTAGG
239601 T
1 T
239602 AGGAGCGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TTCAATTATTAGG
Left flanking sequence: Indices 239075 -- 239574
AAAACCCTAAATCTTCCTACTCGAACAAGAACTTTATATAGTAATTCGACCTCTTGCTCCGCATC
CCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATTGAACTACCTACTCATTATTCGGAGG
TGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGAC
ATAAGATTGAAAGATCTAAACCTTCCTCTTCGGAGCGGAAACGGACATGGCCAAAACATATAAAG
ATCGGCGTAGTCACTGATAGGGGCATATCTATCCGGATAGAGGATAGTCTAGCCGGATAGAGGAT
AGTCTAGATCGATTCATAGATAGATTTCTATCCATATAGATAGGTATCTCCGTGGGTAGAGATAA
AGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTTCTTGATTCTAATTGATTGC
CTTTTTTTTTGACGACAAGTTTTAAATCGGCTGGAAACATCGTTT
Right flanking sequence: Indices 239602 -- 240101
AGGAGCGTAGACGAGCGGGTAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGA
AGTGGAAGACTGCTGGCCTGAGAAAAGGCGGCCTCTCCCGGGCCCAATTTATCTTCTTTCTTTTT
GATTTCGGGTTTATTTCTTTTTGATTTAGGGCCCCCAGAAATAAAAAAGGTAGGGGAGAAGCAAT
CCTTACCTTACTTACAGTGAAAGAAGCAAGCTTAGCTTTCGGAGTTAGAGCATGGTAGTTCGTAG
GAGATTGATTCGTTTAGGGTAAACGAGCTCTTCTTCTTTGAGTTGATCCTTTATCTTAACTTGTG
TCATTTTGTGTCCCCTCGGTTGTTTCTTTTTTAAACAGAAAAAATAGGTTGGGTTTTAATTAGGT
ATCTGTCTAGGAAATATGGCTAGGTAGCTTTCGAGGACTTATGAACGAATATTTCTTTTACTAAA
TGAAAAAAATCAAAGATGATCCTTAGCGCAAGCGATAAGCTATAA
Found at i:242750 original size:39 final size:39
Alignment explanation
Indices: 242696--242774 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
242686 TGATTTTCTA
* *
242696 TTCACTCATGATCTGGCCTGGTCGACTCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
242735 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
242774 T
1 T
242775 GAAGGATGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 242196 -- 242695
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCCGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAAAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCCGCTAGAGGTTGTAACAATCCGAACGCTCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAATATTTCGGCTGGAACAGCTATGTACGTTTTTGATTTTCTA
Right flanking sequence: Indices 242775 -- 243274
GAAGGATGCGACCTTTTCTCGAAAAACTCCGGATCGAGTTGAAGGTGGTGCAACATCGAATCCTG
TTACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGGTTCTGAA
AGAAAGTCAAAGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGAAAGCTACCTTCATTCAACAGA
TTTGTGGTTGAGTCAATAAGGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGCCTGCG
TTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTCATTTCGGGA
GTTTTTTCACCATCCCAAAAATACAACCCTGTCAAAGGTATCTAACCTTCCTTCCTTATGAGTGG
AAATCCAATCCCGTTTTGTCTTTTTTGCATAAAAACCAAGCTAATATATATATATTTATTTTAAA
CCCGTTCTTCCTACCCCTCCAAAAATGACCTTCTCCAGTCATGAG
Found at i:266093 original size:32 final size:32
Alignment explanation
Indices: 266050--266111 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
266040 GAGCTTTTGG
*
266050 TTTTTCATGTTGTCAAAGAGTTGAACAATGGT
1 TTTTTCATGTTGTCAAAGAGCTGAACAATGGT
*
266082 TTTTTCGTGTTGTCAAAGAGCTGAACAATG
1 TTTTTCATGTTGTCAAAGAGCTGAACAATG
266112 AAAATAGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGCTGAACAATGGT
Left flanking sequence: Indices 265550 -- 266049
TTATGAGAAGAGTGGCAAGAAGTGGATCCATATGAAACCTTTCCTCTCCCCAGCCGTTTCCGGTT
AAGAAGATGTGAAACCGCCTCTCTCTATATCTATATAAGAACGGTGCGTTCCGAGGTGTGAAGTG
GGAGAGAAGGGATTTCCTAATTGGATTGGGGTTTTGAATAAGACAACCTTTTCGTTTTTCATTTT
TTTCATATTGAAAAAGTAATAAGAACGGGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTA
TTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGAT
GGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATG
AGAGAAAAGCATATTGGCTAGTGATTGTGAGTCCAAAATTCTTGCCTGGAGGGGACACCAAAGGC
CTCCGCCCTTCCATCCCTTGGATAGATAGAAGGGAGAGCTTTTGG
Right flanking sequence: Indices 266112 -- 266611
AAAATAGATGGCGAGTGCCTGATCAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGG
TCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAA
CGGCTCGTCTCGCCGTGACCTTCTCTTGAATTCTCAAGACTTCTGTCGCTCCACCCCCGCGGGGG
CAGAAAACCCATCGCTGTCTTGGCTGTACTACCGTAGGCTCTGGGGAAGTCGGAATAGGAGAGCA
CTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACC
CAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT
AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTT
CTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACC
Found at i:287971 original size:13 final size:13
Alignment explanation
Indices: 287942--287982 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
287932 ATTCCAATAT
287942 TAATATTATAGAA
1 TAATATTATAGAA
*
287955 T-AT-TAATA-AA
1 TAATATTATAGAA
287965 TAATATTATAGAA
1 TAATATTATAGAA
287978 TAATA
1 TAATA
287983 GAACATGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 3 0.13
11 6 0.26
12 6 0.26
13 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (13 bp):
TAATATTATAGAA
Left flanking sequence: Indices 287442 -- 287941
GGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCA
CCATGAATAGCGCATAACAGAGCAGCGCCCAACACTCCAGCAACTCCCATCATATGAAATGGGTT
CAATGTCCAATTATGAAATCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCGACACCAAAAC
TTGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAAACAAAAACAGCA
ATTGGACCGGAGAATGCAATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTG
ACGTAACAAAGCATTCGCCATGTTCAAGCTAGGAAGAGGAGCGCATAAGGAAGGAAGCACGGACA
AAAGACCAGTGAGGCACTTAATTAAGCGATAGAAAGAAGTCTTTCAGTATCTTTCTCTTCGCAAG
GCAAGAGCCTCTTTCCTGTTGAGGCGGTTAATCCAATTCCAATAT
Right flanking sequence: Indices 287983 -- 288482
GAACATGGAATGCGCGCGTAAAGAAGGAAGAAGTCTTGGCTAAGCCAGAAGTTCCTTTGCCAGCC
TTGCCTTCCCCATTCTTTCGAAGTTGCTAGCACTATCTCTCCTTTGCTCCAAGGGAATCTGTCCA
TTCGGGGATATTTCATATGAATATGCCTCTTCAAGTCATTTATTTACCTATTAATTACTGTTAAA
CATGGATGCATTTCCATTCCTGCTTTCAGTTACGGATTTACGAGTTCTATTTAGGCTCTAAGCCC
TTATTCTTTATTCTTTCAAAATTTACATATTGGGTTGATTAAGTCAATCAGGTTAGGTTAATCCC
GAATCCCAACTGTTGAATCTCTTGCTTAAAGGGGTAAGGAAAGAAAGAGAAAGCCAAGGAATCGA
ATTCCTTTTTTCTGACAAAGAGAAGGCTGAATATGGACATTCAATTGGATCTTTAGGCTTTCAAG
ACTCCCGCGTGAGATACTCCAGCTTTCCAGAAATGAAGGGATGTA
Found at i:299483 original size:21 final size:21
Alignment explanation
Indices: 299450--299490 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
299440 TTTCGTCGGC
* *
299450 GATCTGCCGCTGCTTCACTGT
1 GATCTACCACTGCTTCACTGT
299471 GATCTACCACTGCTTCACTG
1 GATCTACCACTGCTTCACTG
299491 CCCTTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.34, G:0.20, T:0.32
Consensus pattern (21 bp):
GATCTACCACTGCTTCACTGT
Left flanking sequence: Indices 298950 -- 299449
ATCGGAACAATTAGGGCTTTCCCCTTCGGAGTTAGATACTACTTACTTAGGCGATTAACCAGATG
CAGCTCACTCAGATCTTGCTGTGCCTGAAAGCCGTATGAAAACTCAAATCGATGGGGGTCTCAAC
CTAACTTAATCTGCTGATGGAACCCGAGTGGGAGTCGGAACCCCTTCGTTTTTATGTGGTATAGT
CCCCCGAAACCGTGAAGTTTTCTATCTAGGCCCTTGGAAGCATCTTCCAAAGGTTATTCCAACAT
GAATGAGATTAATCAGAAGGATAGTCAAATACTTTTTGACTACGTTCATCTACTGTTGGTGCCGG
TGTCATAGCACTACCTACCGGGAAGCTGACTCACGCTTTCATGCTAGTAAGGGTTTTCTTCTTTT
ATTTCCAACACGTTCGGAGTCTAATGGTTTCAGATGGGAGTCGAAGAATCGTGCAAAACGGTTCT
TTTATGAGGTTCATCAATCAACCATTACGAATCTATTTCGTCGGC
Right flanking sequence: Indices 299491 -- 299990
CCCTTAAATAGAAAAAATAAAAAGAGGATTTTATATCACCCAATTCTTCGTTTACTAACGTAGAA
CTCATACTACGCCAGTAGGGGCTAATCAAAGTAAAGAGAGACTAAGCTCTATCATTTTATTACTT
ACTTCATTCATTGCCGAAATAAAGAATAAATCTAAGCGCTTGAAAACTGGCCTTTAAAAATAAGA
TATGCTTGCCTACCTCTTTTCTTGCTCTAGAGCCTTCAAACTAAGAGAAAGCACTGCCTACGAAG
CACTCCAATGGCTGAACTCTCAACGGCCAGAGGAAAGACTCCTACTCCCACAATAGGACTAGGGG
AAAGAGCACTATCCAATTTTCCTTTAATGTAAATGGTGGAAAAGCACTTTCTGGTCTAGCAATTT
AAATTGTAAAGGCTGGAACATAACTCCCAGAAACTACAACAGACACTGCAACAGGAAGAGCTTAC
CTTAAGACGTCTACTGACTCGGCTGGCATGACATTGAAATAAGGG
Found at i:311526 original size:12 final size:12
Alignment explanation
Indices: 311509--311536 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
311499 CTTATCCCGG
311509 CTTAAGAGTATA
1 CTTAAGAGTATA
311521 CTTAAGAGTATA
1 CTTAAGAGTATA
311533 CTTA
1 CTTA
311537 GGAAAGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (12 bp):
CTTAAGAGTATA
Left flanking sequence: Indices 311009 -- 311508
ATGGATGGTACCAGGTTTCGCTACACTTTACTTTTACGAATCCAGGCGCGTCCGGTAGAATTGGG
AAGATCCACTTGGTCGAAATGACCCCTAGCCAGGATGGTAGCCGACTGTAAGCACAAGACGGGAT
TGATTAGAGATATCCCAAGTTCCCAGCTATACTTGTGGATCTTCAGTTTACAGAGAAAAAAACGA
GGAGAGAGAGGGTCCCCAGACAATTGTCGTCAGGTTGGAACCCACACCTATAAAGTTTCCGTTTC
CTATAGCTGGTTGACAGGCTTAAAACGTTCTTCACTATTCGCCGAGGAAGATATGAAACACAAGG
ACGGATCACTGTAATGACTGCCTCTGTCCCGAAGAATCCTCGTTGAAAAGTATGCTCGGTTGCAG
GCTTCAGTGACGATAAAGGATCCGGCATATGCAATCGTCAGAGGATAGACGTGTCGGACATTAGG
ATTCCAACCGCCGGGAGGGATCCAATGAACGGAAACTTATCCCGG
Right flanking sequence: Indices 311537 -- 312036
GGAAAGCTGCATCTAACCTCTTCCGGTGGGCCTGCCAACACGCCGCAAGCTTCGTCAAGAACTAC
AGGGTATCTTTTATATGCAGACGGTTAGAATAGGGGGTGTAAGAAGTGCCTGATGACCGAGAAGC
GTCCGGCAAAAAAGCAGAGCAGACATAACAAACAGTAAAGAGAAGAGCAAATTGAGACTTTCAGG
AAGGACCTCCCTTGATTCTTGGGTTTAGTCACCGCCCTAAGTATAAGTTCATTTGAGGTAAAGAT
CGGCGGGGCTAAGGATGCTTACGGGTTGCGTGGTTGGGCCTACGAAGTCAAAAAAAATAAGTTAG
TGGGCGCCATTGTCTTGAAAAGAATAGATTTCTAAATTATATATTTAAAGTGGCCTGGTTCGGGT
GGCTTCGGTCAGGGGGGAAAGGGGTCAGTAGAGGCAACTAACCTGAGATGCCGCTGCTAGCAACC
TCTTTATTCATTGGGTAAGAGCGATCCAAGCCATATGCTGTTTCG
Found at i:318669 original size:18 final size:18
Alignment explanation
Indices: 318629--318671 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
318619 ACCGCCCTGC
318629 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
318648 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
318665 CATAGTC
1 CATAGTC
318672 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 318129 -- 318628
ACCGAAGCGACGAGACCTTGAAAGCTTTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGG
GGAAGGTTTTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGATAA
ATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAG
TGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGT
TGCTTTGACTACAGAACCATGCCGGAGCGAATTGAATGATCGGGCCGAGGGCAGCCCCCTCTTCC
CCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCG
GTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGC
CTTTACTCTTTTGATTAGAGTAGGGGTCGCAGCGTACCGCCCTGC
Right flanking sequence: Indices 318672 -- 319171
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:333724 original size:14 final size:14
Alignment explanation
Indices: 333705--333732 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
333695 ATCGGAATCC
333705 ACTTATATTAAGAT
1 ACTTATATTAAGAT
333719 ACTTATATTAAGAT
1 ACTTATATTAAGAT
333733 TAAGACAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
ACTTATATTAAGAT
Left flanking sequence: Indices 333205 -- 333704
GTTCTATAGTAAGGGGCCTTTTCTTGCAGGATGCCGGGTACGCAGGAACGCCCAAGCGGGTTTCC
GCCTTCATTTGGTCGTGCTGCTATGATGTAACGTGCAGTCGTCCCGAGGCAGCAGGATTATGGTA
AGGGGCCCCCTCTTTTCTCTCCCTTAAACTCCTTTATAGATTTCGAGTCGGGAATAGAGCAGTGG
CTTATTCGGCGCTATATCACAATTCATTAATTCTCGGGCATAGCTGTTCACGAAACGTGGCATGG
GACATCTGTCGGCGGCGGGAGTCTTACATCTGAGCGAGAGGTCAGACCAATCCCATTCATTCTGG
TCCGATCCGAACGGATCTTGTTGAATGAATTGATTCATTGTTGTATGCCCTAATTATATTATTTT
TTCCTACTTCTGAGATTGATATAGATATATAGTAGAAACTTTTTTTTATGGTGGAGAGTGGGGGG
TGAAAACACCAATGCAGCAAAGAACGACCGCATGAATCGGAATCC
Right flanking sequence: Indices 333733 -- 334232
TAAGACAGACGACCGAGAAATAAAGGCTTCACGTTCTCCAAGTGGTTGATCTTAGCGTGCTAGCC
GCTGCTTCATTTCGTATAGTGATAAGGCTTTCTCTTCTCTTTCTTAGCGCTCCGCCCCCCGTAAG
GGGAACTCTGGTTGCGCGGCTTTCTCTTATATGGGTCTATTTTCTCTGACTTGACTCAGCTTGAC
CTACTTGACTCAGCGGTTAGAGTATCGCTTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAG
TAGGTAAAACCGGCCGAAACCCCTGCTTTTGCCAGCATGACAGCAAGCACGGACTGGCAGCAAGG
AGAAAACTGAATGACCGGTAATAAAGCCGTGTACTAGAAAAAAAAAGCCCTAAGGGCAACGGGAG
GTGAAACAACAAAAAGAATCGTTTGTTCAGTGTCTTCTCTCCATCACCAAAATAGCTGGTGACAC
TTCTGTCTCTCTTGGATCTATCTCTTATTAGTTACAATATGAGGG
Done.