123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_056367
Parameters: 2 7 7 80 10 50 500
Length:  551622

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36036--36089	25	2.2	25	100	0	108	44	20	14	20	1.86
36170--36215	23	2.0	23	91	0	74	36	19	15	28	1.92
36415--36480	33	2.0	33	100	0	132	27	18	15	39	1.90
36468--36512	23	2.0	23	100	0	90	24	8	31	35	1.86
56815--56876	31	2.0	31	96	0	115	40	6	29	24	1.80
83534--83634	34	3.0	34	97	0	184	45	18	15	19	1.85
83647--83689	21	2.0	21	100	0	86	30	4	37	27	1.77
83775--83823	24	2.0	24	100	0	98	46	12	28	12	1.77
90215--90261	26	2.0	24	84	16	62	31	17	25	25	1.97
98681--98726	23	2.0	23	95	0	83	43	4	15	36	1.66
131757--131792	18	2.0	18	100	0	72	44	16	27	11	1.82
203424--203469	23	2.0	23	100	0	92	30	30	17	21	1.96
206118--206157	20	2.0	20	95	0	71	30	20	12	37	1.89
206693--206738	23	2.0	23	100	0	92	21	17	30	30	1.96
242115--242148	17	2.0	17	100	0	68	29	11	17	41	1.85
247005--247067	21	3.0	21	100	0	126	14	23	4	57	1.56
247182--247237	13	4.3	13	74	14	53	7	48	0	44	1.30
247193--247295	27	3.8	27	82	5	145	7	40	1	49	1.43
249794--249829	18	2.0	18	100	0	72	16	22	5	55	1.62
259071--259098	14	2.0	14	100	0	56	28	35	0	35	1.58
259757--259794	19	2.0	19	85	10	51	44	21	31	2	1.66
313904--313936	11	3.0	11	95	0	57	51	0	30	18	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322579--322611	14	2.4	14	94	0	57	27	15	3	54	1.55
322605--322648	21	2.1	21	100	0	88	34	4	9	52	1.54
325878--325914	18	2.1	18	94	0	65	16	21	24	37	1.93
327074--327117	21	2.1	21	100	0	88	22	20	0	56	1.42
333685--333728	21	2.1	21	95	0	79	25	11	13	50	1.75
349634--349683	25	2.0	25	100	0	100	40	12	20	28	1.87
391907--391938	17	1.9	17	93	6	57	31	12	25	31	1.92
398366--398423	29	2.0	29	96	0	107	22	17	29	31	1.96
402108--402147	20	2.0	20	100	0	80	45	0	15	40	1.46
411910--411955	23	2.0	23	95	0	83	36	15	4	43	1.66
420375--420421	26	2.0	24	84	16	62	25	25	17	31	1.97
426813--426861	24	2.0	24	100	0	98	12	28	12	46	1.77
426947--426989	21	2.0	21	100	0	86	27	37	4	30	1.77
427002--427102	34	3.0	34	97	0	184	19	15	18	45	1.85
433428--433471	21	2.1	21	100	0	88	52	9	4	34	1.54
433465--433497	14	2.4	14	94	0	57	54	3	15	27	1.55
444964--444993	14	2.1	14	100	0	60	40	23	16	20	1.91
480359--480404	23	2.0	23	100	0	92	30	30	17	21	1.96
484992--485035	23	1.9	23	100	0	88	29	31	15	22	1.95
487684--487723	20	2.0	20	95	0	71	30	20	12	37	1.89
487911--487964	21	2.6	21	78	0	72	38	22	25	12	1.90
507514--507577	18	3.6	17	87	8	92	32	26	31	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507526--507580	18	3.1	18	94	0	101	32	27	32	7	1.84
528306--528331	13	2.0	13	100	0	52	46	15	15	23	1.83
530233--530260	11	2.5	11	100	0	56	7	21	0	71	1.09
535617--535651	6	6.0	6	96	3	63	48	0	17	34	1.47

Tables:   1

The End!