Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_052879
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 386758
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 8 characters in sequence are not A, C, G, or T
Found at i:6405 original size:8 final size:8
Alignment explanation
Indices: 6392--6431 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
6382 TAGTTTATAG
6392 ATATAATT
1 ATATAATT
6400 ATATAATT
1 ATATAATT
6408 ATATATCTATT
1 ATATA---ATT
6419 ATATAATT
1 ATATAATT
6427 ATATA
1 ATATA
6432 TCTATTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 21 0.72
11 8 0.28
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATAATT
Left flanking sequence: Indices 5892 -- 6391
CGGCCCAAGCGAAGATCTTCGATCCGAATCTTCGCATCTACTCTCTCTTAGAGGATGAACTACGC
CTTCGCTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTCAGCTGCTTCGCGTATTACTCA
CGAAAGCCGTATTGCCCGAAGGGGGCATGCCGCAAGAGCGTAGGAGGCGTGCCCGAAGGGCAGCG
GAAGCTGTGCGGTTCCAGGTGCCGTCGCTAGATTGAGATCTGCAGGGTGGCGAGGACTTCGACTG
CCTTGTATCGGGTGCAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATAACCGT
TATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTGCGGATCTCTACATGCAATTCGCCC
ACTTCGGGAAGAGCGGACGGAAGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCCCG
GGAATGAACAATTGGATAAAAAAAACGGATTTTCTTAGTTTATAG
Right flanking sequence: Indices 6432 -- 6931
TCTATTATTTTATATAAAATAAATTTTTTAAGCAAGCGGCCCCTTCGCGACTCAAACGGGCGGGG
GCGCTTTGTTTGCTTGCAATGCCTGCAGTTCGCCTTTAGTTAGAAGTATAAGTAGAGGGCACCCT
TTGCCCCACACTTCAGAAAAGGTAAAAAAGTATGGATTAAGTAAGAAAAAGTACATAACATAAGG
AGTGAGAAAGAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTAGTATAGCT
ACACCTAAAAAAGTTTATTCCTACCCCCTTTTCTTCCCCTTTCTGTCAATGTTGCCAATTCTCAG
AATACTTATAATGTACCCTCGCGCATACAATTGCCCAACAACTTTCTTCCTCCGACTTCTTTAGC
CACTTCCGCATCTGTCGTCTTCGGGATCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAATTC
CAGCAGCCTGGTGAGGGCTGGCTGTCTGGGGACAGGTTAAGGCTG
Found at i:6421 original size:19 final size:19
Alignment explanation
Indices: 6397--6439 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
6387 TATAGATATA
6397 ATTATATAATTATATATCT
1 ATTATATAATTATATATCT
6416 ATTATATAATTATATATCT
1 ATTATATAATTATATATCT
6435 ATTAT
1 ATTAT
6440 TTTATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATATAATTATATATCT
Left flanking sequence: Indices 5897 -- 6396
CAAGCGAAGATCTTCGATCCGAATCTTCGCATCTACTCTCTCTTAGAGGATGAACTACGCCTTCG
CTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTCAGCTGCTTCGCGTATTACTCACGAAA
GCCGTATTGCCCGAAGGGGGCATGCCGCAAGAGCGTAGGAGGCGTGCCCGAAGGGCAGCGGAAGC
TGTGCGGTTCCAGGTGCCGTCGCTAGATTGAGATCTGCAGGGTGGCGAGGACTTCGACTGCCTTG
TATCGGGTGCAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATAACCGTTATGA
GCGGTACGTTTCAACCAATTAAACTATAAGCCCCTGCGGATCTCTACATGCAATTCGCCCACTTC
GGGAAGAGCGGACGGAAGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCCCGGGAAT
GAACAATTGGATAAAAAAAACGGATTTTCTTAGTTTATAGATATA
Right flanking sequence: Indices 6440 -- 6939
TTTATATAAAATAAATTTTTTAAGCAAGCGGCCCCTTCGCGACTCAAACGGGCGGGGGCGCTTTG
TTTGCTTGCAATGCCTGCAGTTCGCCTTTAGTTAGAAGTATAAGTAGAGGGCACCCTTTGCCCCA
CACTTCAGAAAAGGTAAAAAAGTATGGATTAAGTAAGAAAAAGTACATAACATAAGGAGTGAGAA
AGAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTAGTATAGCTACACCTAA
AAAAGTTTATTCCTACCCCCTTTTCTTCCCCTTTCTGTCAATGTTGCCAATTCTCAGAATACTTA
TAATGTACCCTCGCGCATACAATTGCCCAACAACTTTCTTCCTCCGACTTCTTTAGCCACTTCCG
CATCTGTCGTCTTCGGGATCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAATTCCAGCAGCC
TGGTGAGGGCTGGCTGTCTGGGGACAGGTTAAGGCTGGGCCTGCT
Found at i:14909 original size:9 final size:9
Alignment explanation
Indices: 14882--14916 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
14872 ATCTCAGCTA
14882 CCTACCTGC
1 CCTACCTGC
*
14891 ACTACCTGC
1 CCTACCTGC
14900 CCTACCTGC
1 CCTACCTGC
*
14909 CATACCTG
1 CCTACCTG
14917 ACAGTCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.17, C:0.49, G:0.11, T:0.23
Consensus pattern (9 bp):
CCTACCTGC
Left flanking sequence: Indices 14382 -- 14881
GAGAGCTGCTACAGTTCTAAATTTCCAGTTGACCGAGAAAGACCACACTTGTAGGAGACTTTTTC
CCAATTTTAAGAAATTAAGATCGATTCTCCCCTCCTCACCTGAAGCTACGAAAATCCTTATTGAA
TAAAAGAATCGTACGCACAAAGCAAGCAACGGAAACCTCTGCCTCAGCTCCTACAGATCAAAGCT
AGGCCACACAAAAGAAGGAAAGGTAGGCAGCCTCAAGGATAAGCGGTTGAGCAACCGAGAAGTCG
ACTTCTTAAACCTCCTCAGATGTGCGAGCCTGCTTATGCTGATGCTGCCTTTGATGGTGACCCGG
CTCAGCCTCGCTACACAAAAAGGTAAAGGGTTCAGATGAGAGTAATTGAGTGTATGCCGTCCCGG
TTAGTGTCAGTCTAGCATAGGCAACCCTCTTCCTCGTAAGAAGACATAGCGTCCTTCACTGTCTA
GCTAGTCTTATTGGATTGAACCTGTAGCTCTATCCATCTCAGCTA
Right flanking sequence: Indices 14917 -- 15416
ACAGTCCCTATCTGTCCTTCTTTAGCTCATGAGATAGATCCCGAACCTGTGAGTATGAAGTAAAA
CAAGCTAGCCTTTTCTCTTTTTGGCAGAGGCATAGCACCCGAACTCTCTGCTCGATATCGTGAAT
ATTACATATTACCTTACTTCTCTTTTCTTTGTGAGAGCTCTTAGGGAGCTATGAGAGCGAGGAAG
CAGAGATAGCTATTAGGGAGCTATGAATGAGGGAGGGAGAGAGCTCAGGCAAGAGGGACAGAGCT
GCTGCCTTTAGAATGAAGTTCCTTTTATTTTCCGGTCATTTCATAAGATGATAAAAAACTCAGTG
TGGTATAAATGTTAAGATTTTGAGATCTGACAATGGGGGAGAATAGTTCTCCAAGAACTTTCAAG
CTTATCCGCAGAAACAAGGGATTTACTCTCAAACTACCCGCCCATATACCCGAGTAGCTGAGCGA
AAAAATCGGCATCTTTGGAGGTTACCCGTGCTCTTCTCACCGAGA
Found at i:39729 original size:22 final size:22
Alignment explanation
Indices: 39701--39754 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
39691 CAACTCGACC
*
39701 GTAGGGA-GAGGGAGAAGCTAGT
1 GTAGGGACGAGGGAG-ACCTAGT
*
39723 GTAGGGACGAGGGTGACCTAGT
1 GTAGGGACGAGGGAGACCTAGT
39745 GTA-GGACGAG
1 GTAGGGACGAG
39755 AGTAACCTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 7 0.24
22 16 0.55
23 6 0.21
ACGTcount: A:0.28, C:0.09, G:0.48, T:0.15
Consensus pattern (22 bp):
GTAGGGACGAGGGAGACCTAGT
Left flanking sequence: Indices 39201 -- 39700
CCCGGCTTTCCGGTAAGGATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAA
AGTGGAAGGCTTCGATCCGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAA
GCTTGCTTACTTAGTGTGTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTG
CACTCTCCTCATTCTACTCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAA
AGAAGCTAGGCTTCACCCAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGG
AAATCGATCGATAGGATTGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAA
TCAATTAAGCTATCTGGACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGA
TGGTTACGTGCTTGTCTGAGAGGAAATGGGCGGGGCAACTCGACC
Right flanking sequence: Indices 39755 -- 40254
AGTAACCTCCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGTA
GCTGTGATAGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAAGAAATTATAAAAA
GAGAGTTACTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTCAAACTCTTTTGCAGC
TCTGGAGAAGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGAA
GCGCCTGCATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAGG
CAGCGCCTCGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTTT
CTCTTTCCTTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATAA
AGCACTTTAGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAGC
Found at i:39762 original size:21 final size:22
Alignment explanation
Indices: 39718--39762 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
39708 GAGGGAGAAG
* *
39718 CTAGTGTAGGGACGAGGGTGAC
1 CTAGTGTAGGGACGAGAGTAAC
39740 CTAGTGTA-GGACGAGAGTAAC
1 CTAGTGTAGGGACGAGAGTAAC
39761 CT
1 CT
39763 CCCCTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.27, C:0.16, G:0.38, T:0.20
Consensus pattern (22 bp):
CTAGTGTAGGGACGAGAGTAAC
Left flanking sequence: Indices 39218 -- 39717
GATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAAAGTGGAAGGCTTCGATC
CGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAAGCTTGCTTACTTAGTGT
GTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTGCACTCTCCTCATTCTAC
TCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAAAGAAGCTAGGCTTCACC
CAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGGAAATCGATCGATAGGAT
TGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAATCAATTAAGCTATCTGG
ACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGATGGTTACGTGCTTGTCT
GAGAGGAAATGGGCGGGGCAACTCGACCGTAGGGAGAGGGAGAAG
Right flanking sequence: Indices 39763 -- 40262
CCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGTAGCTGTGAT
AGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAAGAAATTATAAAAAGAGAGTTA
CTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTCAAACTCTTTTGCAGCTCTGGAGA
AGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGAAGCGCCTGC
ATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAGGCAGCGCCT
CGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTTTCTCTTTCC
TTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATAAAGCACTTT
AGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAGCTGAATAGG
Found at i:63570 original size:15 final size:15
Alignment explanation
Indices: 63550--63589 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 15
63540 AAGGCTAGGG
63550 AAGGCTAGGGCATAA
1 AAGGCTAGGGCATAA
63565 AAGGCTAGTAGGGCATAA
1 AAGGC---TAGGGCATAA
63583 AAGGCTA
1 AAGGCTA
63590 ACAGCTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.32
18 15 0.68
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (15 bp):
AAGGCTAGGGCATAA
Left flanking sequence: Indices 63050 -- 63549
GTGAAGCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTG
GAAGTTGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGG
TGGGGAAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGA
GAGACGATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGT
CTCAAAGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCT
GACGCTCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTT
AAGCAGAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCT
AAGCTGGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGG
Right flanking sequence: Indices 63590 -- 64089
ACAGCTTTTCCGAGTAAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:63578 original size:18 final size:18
Alignment explanation
Indices: 63555--63589 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
63545 TAGGGAAGGC
63555 TAGGGCATAAAAGGCTAG
1 TAGGGCATAAAAGGCTAG
63573 TAGGGCATAAAAGGCTA
1 TAGGGCATAAAAGGCTA
63590 ACAGCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.31, T:0.17
Consensus pattern (18 bp):
TAGGGCATAAAAGGCTAG
Left flanking sequence: Indices 63055 -- 63554
GCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTGGAAGT
TGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGGTGGGG
AAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGAGAGAC
GATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGTCTCAA
AGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCTGACGC
TCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTTAAGCA
GAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCTAAGCT
GGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGGAAGGC
Right flanking sequence: Indices 63590 -- 64089
ACAGCTTTTCCGAGTAAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:74533 original size:20 final size:20
Alignment explanation
Indices: 74499--74536 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74489 CTCATAGCTG
74499 CTAGCAACTCCTAGCTACAA
1 CTAGCAACTCCTAGCTACAA
74519 CTAG-AACTCCTTAGCTAC
1 CTAGCAACTCC-TAGCTAC
74537 TAAAACAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.24
Consensus pattern (20 bp):
CTAGCAACTCCTAGCTACAA
Left flanking sequence: Indices 73999 -- 74498
TCCTGGCTACTCCACCCGGATGGGTGCCACAAACACAGCTTGTACTGGCTAAACATCTCCTATCT
TTCCATTTGAAGGAGTCTATCCCACTGCTTAAGTATGACAAATGTCTGACACTACTATATCGGAC
GTAAAGTCTTGCCCGGCCTCACTGAGTGGATCTGGTGCCCACACCGTAGCTAGTCCTCTTAGCTT
TATTGGAGCAGGTGCCCAAGCTTCTTTGGCTAAAGCACATCTCCTGTCTGAACCCTTGACCTATT
TGAAAGACAAATGCACAAACCCAAATTGAAGAAAGAGATGCTCGAGTCTCTTACGCCATCCTAGG
CGGTTCTCCCGTAGCGTCTCCGCCGGCGACTTTCTAAGGTTCAGGGTTGTCTGCCTATCCTAGGT
GACCATCTTCGTCTACTACAACGAGGGGTGTGTGCCATAGAGTGTGGTACAGGTGTCACCAGTCC
CAGACAGATTTGTTTATGATCTCGTCAACTCGGAACTCATAGCTG
Right flanking sequence: Indices 74537 -- 75036
TAAAACAAGAGCTCTTTCACTCGGGCGACTTTTCTTATTGGGCAAGTTGCCACCCGTTGTTCAAT
ACCCTAACTATAGTAAGTAGCTTAATCTGTCGAGAAGAACCATCCCTACCGGATCGGACATGTAA
CCAGTCTTCTCCGCTTGAGAGGGAAAGACGGCTGCTCTGTGAACAAAACAACCCTAGTTGCTGGT
CCTGCTCCTGCTGCTGTCTGAACTGCCACCTCTGCTCCAATACATAAAGCAGCTCCAGCTTGAAG
CTATTGTAGCAGCTCTGTCCCATTCATCACTGCTTTCTGTTAAAAAGAAAAGAGCTGCTCCTCTC
CGATCTAAGTCCTCTCTCTAGTCAGAAATTGCGTAAGTTAATCAGGATGGATCGACAGGCTTTCC
AAACCTACAGGTCTCTTCCTCGGACCTAGCATTGCTGCCTGGCCCATCACTTCTTCTTTTCTTGA
CTTCGATGATTTGCCTGCAGGAGGATCATCGAAGGTTGGAGAAAA
Found at i:125636 original size:18 final size:18
Alignment explanation
Indices: 125615--125657 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
125605 CAACCTTGTT
125615 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
125633 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
125651 GACTATG
1 GACTATG
125658 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 125115 -- 125614
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 125658 -- 126157
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCATAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGATAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
CTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGAAGCTTTC
Found at i:135158 original size:17 final size:17
Alignment explanation
Indices: 135136--135172 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
135126 GCACAGATTC
*
135136 CCTATAAAGAGAAATTT
1 CCTATAAAGACAAATTT
*
135153 CCTATAAAGACAGATTT
1 CCTATAAAGACAAATTT
135170 CCT
1 CCT
135173 CTCTTCCCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (17 bp):
CCTATAAAGACAAATTT
Left flanking sequence: Indices 134636 -- 135135
ACTCCTAGTAGGCCACGAACTCCCTTTCAAGCTTTAACCGACCCGAATCAAATCCAGATGCCTCA
CCAGATAGTTCTCCTTTCATCTGTCCGATCAGGCAGCCAATTCTATGCCACTAAAGCTTCATGCC
ATTGAAGACTGGTCCCGAAAGCGATTAGAAAGCGAACTAGGATCTGCAAGATTCTACTTTGATCC
GCCTATGAACCTTGGTTCACGCTCTACGTATCTTATTCTTTCAAGCTTTCTCGAGTCACCCTAAC
GTAACGGCTAAGAGAACTTGGCTAACTTCGATCAATTCCACGACTTTCCATCCTTCTTGTGTTGT
GGGATGTGAGTCATCAGTTCTTTCCTCCGCCTGATAGTTTATTCTCGAGGATCACTGAACTTGGC
TTACTTCTTACTGAATGCCGTACTTAGCACTCGGGGCGAGCTCTTAGCGATTAGTCAGTCCGGGT
CCAGCTAGTCTTGCACTTTCAGACCCAAACAAAGGGCACAGATTC
Right flanking sequence: Indices 135173 -- 135672
CTCTTCCCGAATGCTTTCCTTAGCTAATACTGATTGATTCACCGCATCTTCTCCATTAGGAGATC
TAACCAAGCACTCGAAATGCGACATTGACTAAAGAAGGTAGACAAAAAGGCAAACTAGAGAAAAA
GCCAAGCTGACTGAATTGAATCTTTCAGTGGAATTGGGGCTTACCTTATATCATATCCTCTCTCT
TTCAAGCACAGTTGAATGAAAAAAGCGTACCTTCGAAGGCATGATTGCTGCGATCAAGAGCTGCT
TAACATCATTGAGAACAGGAGCTCAGAAGATTTGGTGGAGGATAAAAAGTGAACCAACACTGGGA
TCCGATCATAGCCGCAGTGAAGTGTTGGGATGCAAAGACGATGGTTTTTAGATTCGGCAAACATG
AGATGTGTCCCACACTTGAAGAAGTACATCGAATTTTGGAGATATCCCGTAAATTCCTTTTTGTA
CCTAGAGAAGGACGACCGAGAAAAAAAGGCTTCGCGTTCTCCAAG
Found at i:187489 original size:14 final size:14
Alignment explanation
Indices: 187464--187497 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
187454 AATCGCTCAT
187464 CCGTCC-ACGAATA
1 CCGTCCTACGAATA
187477 CCGTCCTACGAATA
1 CCGTCCTACGAATA
*
187491 CTGTCCT
1 CCGTCCT
187498 CTAGCTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (14 bp):
CCGTCCTACGAATA
Left flanking sequence: Indices 186964 -- 187463
GGATTAAAGCAAGGAAGCAAGAAAAGAGATAAGCGTTAGAGGGAGGTGGGAGGATTCACTCTTGC
TATGCCGCACTCTCATACTTTTGAGTAAGGAATTCCCTGCAAGGCAGTTAACGGCTGTCGGATAG
GGCATCGGGAAGAACATATGGAAAAGAGAACCTGCGAGTACTATTCAGTTAGGATGTGCCCCCCT
GAAATTGTTAGATATTTGCCTTTATGACTCGTCTTCTTTTATAGGGTCTATCCGGGGATACTAAG
CCTGGAATAAGTTTCGATCTATGGCAATTTCTTTGTAGTGGCCAGTTAAAGCTATCAGATATAGG
AGAGACTACCTACTTCAAGTTCAAGGCAGGCTAGCTCAGTACACGATTCCCTTCCTTTAATGTGC
AATTCCCGTCCTTTAAATAGAGCGACTTCCCGCTCTTCTGCCTGTCATCTGTCAACTGGTAACGG
TCGCATCTGTCCAGTAACTGTCCTATAGGCGGTCCAATCGCTCAT
Right flanking sequence: Indices 187498 -- 187997
CTAGCTTCTGTTATGAGTGAATTTCTATGGCCTATTTTATCTAAAAAGAAGCCCTGTGAAAGCGT
CTGTAATGGGGAGCGGTCCATTAACGTTGCTTAATTGGCCTTAGCGTTTCGCACTAAGTAAGCAA
GCTACCTTATTTATGTGCTCTAGTCGAACAAGCAAGCCAGCCTAGCAGAGTAAGCCTTCCCTCTT
CTCTTCACTGGCTCTGATCTCATCAGACTCGTATCCAGCCTCTCTTTCCTCGGTCTCGGTGCTCG
GTCCAGGAGAAGAGAAAGACTCGGATCCAGGGAGGGAAAAATACCGGTATCCCAGCTCCATTTCA
AGCCTAAGCTCTCCCTCCGCTTCTCGATCCCCAGCTTCCGCTGCTAAGCAACCATCTTCTCTCTC
TTCGTCTCCCACTCCTTCTCCCATCACTGGGTATTGGACACCAAGAGGCGGGTACTGAACCCCGA
GAGTGAAGGCGATTCGCCGAAACCACAAGTGTTATCACGTATCTA
Found at i:225524 original size:15 final size:16
Alignment explanation
Indices: 225482--225524 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
225472 TCCTACCTTA
225482 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
225500 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
225515 ACAGTCGATC
1 ACAGTCGATC
225525 TGTCCATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 224982 -- 225481
TTGCATGAAAAAACTCAAAAAAGAATAGGTGATCGTAGGTCAGCCCGTGGGTAAGTTCCGGGCTT
TCATTGATATTTTCTCGTTCATGATCTCTAATCCTTTGAGTAGATTGGGCAGGGGTAAGACTATG
CACATAGCTTCGGTTCCGTCTTGTTTGCCAAGGAGATATGGTTGCTTTTCCTTCTTCAGTAGGCT
TTCCCGCGGGTTCGGTTACAGATAGGATACACGGGTCAAAGGGAAGGCTTGAGTTCAGAGACGAA
GTTGGCTTTGAAGGTACAAACTTTCAGACAGTTCCTTACTTTCTATTCTCTAATCTCGTATGGCA
GCTTTCAGTCCCATCTTCAGTTTCGGGATATTGCTCCTATGCCTCTTCGAAGTGAAGCCCTTATA
TCGAATGATTCAAGACATTTGATTTTATAATAGAAATGAGAGGACAGCCGAATTGACAGAAAATA
GTCTGAATTTGTTGATCAACTCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 225525 -- 226024
TGTCCATCCGACTACATTCACTGGGGGGTGAGGTTGTCCAATTTCAATTATGTGCCGCTCGTTGA
CATCTAGTTTCCATTGCCGGTGTGAGAGATCTTCCTTCGGTTCTAGTTAAGTATGGCAGCTTGAG
GTCTCCTATTTAACTTTCACCAGCCATTGGGAACTCAAATAAACTTTCATTTAACGGCAGGCGAG
AAAGGTTCTAAAAGAAAGAAAGGTAGAAGGGGGGTTTTCTCCCGTTTCGGGGTTCTCTTGTGGAC
TGGCTGTTGACTGGCCGGGAGAAAACCGGTGCTTTTAGCTTAAACGGATTTTCACTGGATCGGAG
CCTTTCGGAAATCCTCCCCTTTTGGCTTCACTTGAGCGGTTGACGCAATCCAAGAGGAAGAGGAA
GCTAAACCCGTGCTGACGAATAACCAAACCCCTTAATTCGTCGAGTAAAGTAAATAGGGAAGGTA
TAGGTTTGTTATGAATGACCCCGTATCGAATACAGGTAATAATAT
Found at i:252918 original size:39 final size:39
Alignment explanation
Indices: 252864--252942 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
252854 CGATTTTCTA
* *
252864 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
252903 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
252942 T
1 T
252943 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 252364 -- 252863
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCGGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 252943 -- 253442
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCAGAGAAGAGTTGAAGATGGTGCAACATCG
AATCCTGTCACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGG
GCCATAAGGGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTA
CCTTCATTCAACAGATTTGTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCT
CTTTTGCATTTCCGCTGCCTGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCC
AGCTGTAATGGTTGAAAATAGGGGGCCAACCAAGACCCTACCCTAATAAAGCTTTGTTCGATAAA
GCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCTTTTGAATTAGCCGATCTTACAAAA
TGGATCGGGCGGGCTGGTTGGGAAGGGGTGATTTGCGGAGAAAAG
Found at i:290686 original size:13 final size:13
Alignment explanation
Indices: 290668--290693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
290658 CCCCGCCCTA
290668 TAGAATGAATAAG
1 TAGAATGAATAAG
290681 TAGAATGAATAAG
1 TAGAATGAATAAG
290694 GAGAGGCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
TAGAATGAATAAG
Left flanking sequence: Indices 290168 -- 290667
TGTCCAGCGGTGTTGTCCACCAGAACATCGATGTGCGGAAGAGAAAAAGAATCTTTTCGGCTTGC
CTTGTTTAGGGTCTTTTGACTCACGGAACCTGCTTTATGAGGGAAAAACCGTTCTCGAAAAGCGT
GACCATCCCGTTGAATCTCGTTACCCTCCCGTGTGGTTATGGGGGCGCGCCCGCTTTCCACTATT
ATGGAGCCGGGCCGCAAGCAAGTGAATGCGATCCCGCCCTCCATCAGCCGGTGTGTGTGAGCTTC
GCTCCTTATAGCTCTACACCGCCGCCGGCCACTTTAGCTCCTCTACCATATGATTCATTCTTTGG
AAGTTAGGCACGTGACTCGATAGCGCAGGCACAAGACCTTTGAATGCAAACAAAGAATGGCGAGA
CCGCATATAGTTTGGAACCCAAGCTTACCTTATTATTATTCAAAGGGGAAGGTTTGATAAAGGAG
CTTTTAAGCCCTTTTGCTGAATTGTTGGTCCGCAGCCCCGCCCTA
Right flanking sequence: Indices 290694 -- 291193
GAGAGGCCTGTTGATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCCCCCTTGTCAC
TTAAAGGGCGAAGTCGCTGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCTACTACGCA
TCCTTACTAATAGTATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTAG
GTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCCCAAAATATATAGTAAAAAATAAGGA
TTGGTGCGGAAAAAAAAGGGGGCAGCCGCGGTCGAACTCTAATTCTGGAAAAAAGTCGGGGCCCC
TTTTCCAAGTCTACCAGATAGAAGATGATAGAGGGCCATATCGTTGCGTTGGACAAGACGGCGCC
GTCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATCAGATGATACGCTTCGGCGATGTTACCTACC
AAATTTAAGGCCTGCTAGGTGATCGAAATTGCTCAGGTCAGTGAG
Found at i:321950 original size:18 final size:18
Alignment explanation
Indices: 321929--321969 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
321919 TTCGGCTTCT
321929 AGCTCAAGT-TCAGTCTCA
1 AGCT-AAGTCTCAGTCTCA
*
321947 AGCTAAGTCTCAGTCTCC
1 AGCTAAGTCTCAGTCTCA
321965 AGCTA
1 AGCTA
321970 GCACGACTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (18 bp):
AGCTAAGTCTCAGTCTCA
Left flanking sequence: Indices 321429 -- 321928
TTTGTGGACTCGCACGCATAGGTACACCAGAAAAGAAAGAAGGGTTTGAAGTGCAAGAAGGCCTA
GCTGTAAGTACTTCCCTGGTATCCAACAAAAAGTGAACTTTGGTTTCATTCCTTTTGCTCTAAGT
ATACACCTTGACAGCCAGTGATTACGGACAAAGAAGTAGATGCTCAAGCCCGCAATAGAAAGAGT
TTTGGGAGCCCCTGACGGAACGGAATGAAACTTAAGTGGAACCCTCCTTCTTTAGTGCCAACCCG
GGGATCCAATAGAGATGCCCCTGTCAAGTGACTCCAATCGTATCTGAATCTGTTTTAATGACAGA
AGGGTAACCCCAAAGACAAGTAGTTTGCTGTGTTGAACGTAACTATAGGTTCTCCACCTTGAACT
GAATGTCCGATCCCTGCTTCTCGGTCCCCTTCCCTCTCCCTAAACCTCTTCCTTTCCTCTTGCGG
TTAGAAAGCGGGAAAAAAGAACTGTTGGTAAGCGGTTCGGCTTCT
Right flanking sequence: Indices 321970 -- 322469
GCACGACTCCTGGCATCGCTTTTCCAGTAAGAATAAGTCCTAGGCTGAAAGATTGGAATTGAGCT
ACCCAACTTACTGAATACAACTATGGACCTGAAACGCTGTCTTTCAACTACTGGTGGTAAGGCAA
TCTAACCTTATTTTACTATTAGTCCGGTCGATACAGGAGATCCATAAGATCCACACACAAAAGGG
ACTTGGAGTGGATTCCTCTCTTCTTCCTTCCGTACTTGTACTATACTTGACTTATTTTATACTAG
TAAACTATCATCACAAGCCAAACTAGCAACAACTAGATAGGGTACACGCTCAGTCACTATATCTT
GAAATCCTATTTCGGTGAACTCTGTCATTGTGGGATATTCGGATTCCCAACCTGCCAGTGAACCA
CCAGAAAAGTCATTAAGTCCCGAAACCCGCCATTACTCAACTCTCCTTCTTGGAAATACCCTTCA
ATTTGACCGGGAAGCCGGCCTCTTGCAATAGTTGGTCCAGTCTCC
Found at i:323449 original size:13 final size:13
Alignment explanation
Indices: 323431--323456 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
323421 AACAATCAAT
323431 CTCAGAAACATGA
1 CTCAGAAACATGA
323444 CTCAGAAACATGA
1 CTCAGAAACATGA
323457 GTCCTCGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CTCAGAAACATGA
Left flanking sequence: Indices 322931 -- 323430
ATCAGTGTTGCGATATCTGTCTGAAATAGTTAGATTCCCTGTTATCAGTGTCTTGATGTCAAACA
GCTAGTGGAAGCGCTTGAAACACCAACTGGTGTCAGTATGGATTCGTAAGGCTGCGATCCTAAAT
CAGTGGATGTTCCTCTCTTTCCTGGGAGTATAAGAATCAAATGGGTCTAAACCCGGTCAAGGAAA
CCGGTGTGCTTGTTATTTGCTTAACACATGGATTTCGAATGCCCTTAGGGTTTTAGGGTTAGGGG
TGGAAAATGAGAGCAGGCAGACAGCGCCCTTGCTACTGGCATTCAAAAGACGGAGGATTCTCGTG
CAAACTATTGTATGCAAAGAGTGAGATTCATGGTTCTTGTTCTTACTGATTTATATAGATGAGGC
AGCTGCACCTGCTTATTCTAGATCTACTAAAGCAGGTTTTTATAGTAAGAAAGAGGAACTGCCAG
CTCAGAAGCAGCAGGAGAAGCTACTTTCGATACCTAACAATCAAT
Right flanking sequence: Indices 323457 -- 323956
GTCCTCGTCCTAAAGAAACGGAGAATTTGCTTAAACGAAGAATGCTCTGAAATCCTCGTACTGAT
TCACATACAGAAGAGAATGGTATAGAATCTCTGTCTTCCAAGAGTTCGATTCCATAGCTGCCTTC
ACTAGTTCCATTCCCGGTCTAGGAATTCTTTCTCTTTCTTCGAGTTAGCAGTTCGTAGCTCTTTA
CTCTCGAATTAGACATCAATGAAAACAAGAAACCTGGATTGGATCTTGACTGAAATCGCTTTCCT
TAGCTACAAGAGGAAAGAGAGGTGGAATTCACATATTTTTTATATAAAATAGAAAGAAAAACCTA
GTGCAAAAGCAAGAAAAGGGCATTTGAAGTGATTATAGTAGAAGAGGGCTAGTGTGTAGAATTAT
AGGTGTGGTTGGTCTAGGTGGCAAAACAAGGTAGCTGTAGTGACTCCTAGAGAATTACAAAGAAG
TTCTCTTCTCCTTTCGTTCTCTTCTTTCTTTTTTTGGTTGGCAGG
Found at i:335018 original size:21 final size:20
Alignment explanation
Indices: 334989--335030 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
334979 CAAAGATTGC
*
334989 CCACTTCACTTCGCTTCACTT
1 CCACCTCACTTCG-TTCACTT
*
335010 CCACCTCACTTCGTTTACTT
1 CCACCTCACTTCGTTCACTT
335030 C
1 C
335031 GTAACCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.14, C:0.43, G:0.05, T:0.38
Consensus pattern (20 bp):
CCACCTCACTTCGTTCACTT
Left flanking sequence: Indices 334489 -- 334988
CAGCCTCGTGAATACAACCGTTAGGCTGCGAAGCAGATCTTGTGCAATCAATAAAAAAAAAAGAA
TGAAGGAGCGGAACCTTCCTCTGACTCACTTCGGTGGCAGGAGATTCCGGAATTACTACGCAAGA
TAAGGGGACTCTGTCAAAGAGGCACACTCATCTCGATGGCTTGACGGAACACGGCCGCACACCCC
TTTGTTGTCAACGCGACTGAAACGAAAGAGTGGCGCCTCGGCCACTGCTTTGTATTGAAAGTGGT
GCTCCTCGTCATGCTTGCCGTGGGAGGGGATGATTACAAACCATCCCTCTTGCCAGTCCCCGTCT
CCCTGACTCGTCCGGGGATCCCTCGTATCATTCCGTCATTTCACAGATGTAGGGTCCGTAAGGGC
GACGAAAGGTAGGATGCCCCTGTTTGGCTTTTGTTTTCCAAACAGGGTTTGCCGCTAAGCCAACC
CTCCATATCTGGACGCTGGTTCAAGTCAACAGTGGCAAAGATTGC
Right flanking sequence: Indices 335031 -- 335530
GTAACCTCATGTTTACACAAAATGTTGTTGTTAAGGAATTCCCACTATGGTCTCGAGAGAACAAT
CCTAACCCAAAGCTTGGAAAACTTTTCATAATCCTGCCTTCGATCTCCGCAAGCGGAGGGTTTCG
CACTCAACCAGCGGGAGATTGCTCGACCATACCATTAGGGAGAGGGGATTGAGACGATCTTGAGC
GTCAGGCGAAGCCGAGACACATCCATACTAGAAGCCATTCGAACTTCCAGCAAAAGGACTCGGGG
GTGACCTAACCGAGTCCATCTTGTTCCCCCGTACCATCCCAATGTGATTAAGATCAATCCGAAGC
CCAGACGTTTCGAGCTCTGTCTCGATCAGATGCATCAGAGGCGCCAAAGGCGTGAGGGGAGGCTT
GAAAAACTGCCGGAATGGTCCTACGGGTATCTTTTCCCATCGGAGGTAGTGCCCAACGGGAGAAG
GGGCCGAAATGGGGTTTCTATTACCAGAAAGCGTCCATTCAGATG
Found at i:340138 original size:30 final size:30
Alignment explanation
Indices: 340102--340213 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 30
340092 GACTCAAGCG
*
340102 ATTTTAATAGCTTTTCCTTTTCTACTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
*
340132 ATTTTAATAGCTTTTCCTTTTCGAGTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
**
340162 ATTCTATTTCTA-CTTTTAATTCCTTTTCTAGTTGTA
1 A-T-T-TTAATAGC--TT--TTCCTTTTCTAGTTGTA
340198 ATTTTAATAGCTTTTC
1 ATTTTAATAGCTTTTC
340214 TAGTTTTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
30 32 0.48
31 1 0.01
32 4 0.06
33 8 0.12
34 4 0.06
35 1 0.01
36 17 0.25
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (30 bp):
ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
Left flanking sequence: Indices 339602 -- 340101
GCGGGATTGGATTTTTTTTATAGTGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAA
ACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCATAGG
TGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTGAGGA
ATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCCAAAAA
AAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCC
AACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTTATTA
TTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATGCTAC
TTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCG
Right flanking sequence: Indices 340214 -- 340713
TAGTTTTAATAGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTT
GTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAA
AAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTT
GACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATA
AGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGA
AAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCAT
AGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGG
CAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGG
Found at i:340180 original size:42 final size:42
Alignment explanation
Indices: 340133--340243 Score: 102
Period size: 42 Copynumber: 2.6 Consensus size: 42
340123 CTACTTGTAA
*
340133 TTTTAATAGCTTTTCCTTTTCGAGTTGTAAT-TCTATTTCTAC
1 TTTTAATAGCTTTTCCTTTTCGAGTTGTAATAGCT-TTTCTAC
** * * * *
340175 TTTTAATTCCTTTT-CTAGTT-GTAATTTTAATAGCTTTTCTAG
1 TTTTAATAGCTTTTCCT-TTTCG-AGTTGTAATAGCTTTTCTAC
*
340217 TTTTAATAGCTTTTCCTTTTCTAGTTG
1 TTTTAATAGCTTTTCCTTTTCGAGTTG
340244 CTTTTCCTTT
Statistics
Matches: 51, Mismatches: 13, Indels: 10
0.69 0.18 0.14
Matches are distributed among these distances:
41 3 0.06
42 44 0.86
43 4 0.08
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (42 bp):
TTTTAATAGCTTTTCCTTTTCGAGTTGTAATAGCTTTTCTAC
Left flanking sequence: Indices 339633 -- 340132
CCATAAAGCGCGAACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATAT
CGTGATGTAAGTCCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCAT
GGTTCCGCTGCATCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGG
TTCATTCTTTAACTGCTCCGCCCCCCCCCAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAAT
TCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATT
TTCTTCTCTTACGCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGA
TATTTGGAAGGGATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGG
CAGCGACTCAAGCGATTTTAATAGCTTTTCCTTTTCTACTTGTAA
Right flanking sequence: Indices 340244 -- 340743
CTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAA
AATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAG
TAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGC
ATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCT
GTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGAT
TGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGT
TTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAA
CTTAACCGGGCATGGAAGGCAACTCTATCAAGTAAAGCTAGTCGT
Found at i:340189 original size:18 final size:18
Alignment explanation
Indices: 340145--340200 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
340135 TTAATAGCTT
* *
340145 TTCCTTTTCGAGTTGTAA
1 TTCCTTTTCTACTTGTAA
*
340163 TT-CTATTTCTACTTTTAA
1 TTCCT-TTTCTACTTGTAA
*
340181 TTCCTTTTCTAGTTGTAA
1 TTCCTTTTCTACTTGTAA
340199 TT
1 TT
340201 TTAATAGCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.57
Consensus pattern (18 bp):
TTCCTTTTCTACTTGTAA
Left flanking sequence: Indices 339645 -- 340144
AACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGT
CCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCA
TCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAA
CTGCTCCGCCCCCCCCCAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGG
AAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTAC
GCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGG
ATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAG
CGATTTTAATAGCTTTTCCTTTTCTACTTGTAATTTTAATAGCTT
Right flanking sequence: Indices 340201 -- 340700
TTAATAGCTTTTCTAGTTTTAATAGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAAT
TCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTG
ATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTT
GTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCT
TACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTT
TACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAG
AGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTA
CTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACT
Found at i:340190 original size:24 final size:24
Alignment explanation
Indices: 340163--340223 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
340153 CGAGTTGTAA
* * *
340163 TTCTATTTCTACTTTTAATTCCTT
1 TTCTAGTTCTAATTTTAATACCTT
* *
340187 TTCTAGTTGTAATTTTAATAGCTT
1 TTCTAGTTCTAATTTTAATACCTT
*
340211 TTCTAGTTTTAAT
1 TTCTAGTTCTAAT
340224 AGCTTTTCCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.07, T:0.59
Consensus pattern (24 bp):
TTCTAGTTCTAATTTTAATACCTT
Left flanking sequence: Indices 339663 -- 340162
GAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCA
TAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTG
AGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCCA
AAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTT
TTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTT
ATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATG
CTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAGCTTTTC
CTTTTCTACTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAA
Right flanking sequence: Indices 340224 -- 340723
AGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAA
AATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTT
TTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGA
AAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAA
TGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAAC
TAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCA
AAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGG
CTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAGGCAACTC
Found at i:340246 original size:18 final size:18
Alignment explanation
Indices: 340225--340261 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
340215 AGTTTTAATA
*
340225 GCTTTTCCTTTTCTAGTT
1 GCTTTTCCTTTTCGAGTT
340243 GCTTTTCCTTTTCGAGTT
1 GCTTTTCCTTTTCGAGTT
340261 G
1 G
340262 TAATTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.22, G:0.16, T:0.57
Consensus pattern (18 bp):
GCTTTTCCTTTTCGAGTT
Left flanking sequence: Indices 339725 -- 340224
TCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATT
GTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCC
CCAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGG
CTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTA
TTTATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAG
ATGCTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAGCTT
TTCCTTTTCTACTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTTTA
ATTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCTAGTTTTAATA
Right flanking sequence: Indices 340262 -- 340761
TAATTCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCAT
TTTGATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTG
AGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCT
CTCTTACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTC
CTTTTACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAA
TGAGAGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATT
CTTACTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAG
GCAACTCTATCAAGTAAAGCTAGTCGTCAGTCAGGGTTGAGACAG
Found at i:357570 original size:17 final size:17
Alignment explanation
Indices: 357548--357582 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
357538 ATCATCTCTT
357548 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
357565 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
357582 T
1 T
357583 AGCTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (17 bp):
TCAAGAAGCCAACTCAA
Left flanking sequence: Indices 357048 -- 357547
TGCGCTCTCACTAGACTTTTTATTTTATGTCTACGCCGCCTCGATTCACTCAGATTTAATGGTTT
GGTAACCTGCAACATCTTTGGTTCGGCTAGCTTTCATTTTTTTGATCGAAGTCGGTTGTCTTATT
AATCGATTGGAACTCGTAGCTCCAACTATGTATTCCCACTGCCCTGACATGGACAACTTCGCTTT
TACCTAGGTTTATTCACGAAGCATAGGGCATACTTTCTATATAATTTATGCTTTCGTCCAGCCGG
AATCTTAACTGGACGTCTATTGAAAAGGACGGTAAATTGAGAAAAAAAGCATTTCATTAAAAAAA
AGAGTGGATTCTTGAGGTTACATTCCGCTATAGTAGCTTGACCAACGTGAAAGTGGAACAAGTGC
ATGCCCCATACACGAAATTTAATATTAGAGTATAAATCTCATATCGGTATGAGGCTTCCAGTCGA
ATATCTGACTCCGCCTATCACTTTATTCTGCTTCCATCATCTCTT
Right flanking sequence: Indices 357583 -- 358082
AGCTTCTTTTAGAACCGCTATGCCCTCTGCTGCAACTGAGCTAGTTATTGGGAACAGATGGGGAC
TACAAGCGAAGCTTCGCTTGCTTATACCACGTAATTCAACCTCAACAGGAAGGCAAATGGTAAGA
TCCGGGTAAGAGGTTTCGCAGATCTGCTTATTACTGTACCAAACAACAAGACGAAAGCGTCAAAG
GCGAAGCCATGGCGTCACACAATTATCATACAAAATTCTCATTAAGCCACTGTGAGAGAAGGTTG
CTGATCGACGATAATAGGTAGCTTGCAACTATAACATAAAGTGGACGAGCTGACTCAGTGGAGCC
TAAAAATAGCACAAGGTAGTACTAGAAATGATATACAGATGAGATCAAAGGATGGATACACGCAC
GGAGGGAACCAGAACCGGGATAAGCCGCCCTTATTGGGCGCGGTAGAAGCTTACTCTGTAGTTGG
TCTGAAGGAGGTGTTCCACTTCTCACCATCGATTATGATTCGTAT
Found at i:386272 original size:15 final size:13
Alignment explanation
Indices: 386240--386264 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
386230 ACCGGTATCG
386240 TATAATATATATA
1 TATAATATATATA
386253 TATAATATATAT
1 TATAATATATAT
386265 TATTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATATATATA
Left flanking sequence: Indices 385740 -- 386239
TGCCTCTATCATCTACGTCAATTTCTTCTTCAATAGATTCCCTCACTTCTGGCCCGAGAGAAAGT
AGGCCAAAAACGTGGGATGTAAAAAAAGGTGTATTCTAGGGCCAGGTGATGTCAGGTATACAGGA
TGAGTCTCACAGTCCCCACAGCCTCCACGCGAGAACGCATCCCCTTTTCCGTGATGATGCTTTGT
TAATCCTTTACTGGAAGTCTGCTTTTAAGAAAACCCTGCATAGAATAGGTCACATAAAGTGAAGG
CTGGTACCCGAATCAATCCACCATGCATAAGTATATAAGTAAAAAAAAAGCAACTTTTCAGAAAC
AAGGGCATAGTGATTGCCTTCCTTCACTCCTTAAAAAACCGAAGCTTTGAACTAAATATCGTACA
ATCCTTTTTTATAGTTGCAAAGCATAGCGAGAGAAAAAGAACAAGAAAGTTGACCGTGACGGTCG
TAGCTCTATCAAGTAGGTACGCTAAACACTCATAGACCGGTATCG
Right flanking sequence: Indices 386265 -- 386758
TATTATAAAAGTCGCGGTGGAATCCATTGCGATCTTGGGCATCGCCAAAGAAGGGTGTTCTCAGC
GCCTATGCTTAACACGGCTCCCATGATAGTAGCAGAAAACGAGTTGTGCTGGTGATGTGATCGGA
CCATTTCCCCCCGGGAAATACGGTCACAAGTTCATACTTTCTTTTTTACTAGTAATTTTTTACTA
TAGTAAGTCAAGATCAGAGCAGGCACAACGACGCAATTCTCAGGGGCGTGTCTGGTGCTATCGTA
TATAAGAGAAAGGTTGGGTTGCATTTAGGAAGGATCTTTCTCTTTAACTAGAAATATCTTAAGAT
AAGAAAGCGTAAAAAAGAAAGGTTTTGATTCGACCTGATTAAACAAAGAAAAAAAAGCTTTCTCC
GCGTCAGGCTGTTGATGTAGTTGCTTGTACTTTTCATTTTATGTCGAGATTTAGTTGGTGTTCAG
TGTACCTGTTGAAGACCTTAACGTAAGTAACTTAGTGCA
Done.