Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_045036
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 779106
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:38837 original size:13 final size:13
Alignment explanation
Indices: 38819--38844 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38809 TGTCGACATT
38819 TTCTTCATCTCAA
1 TTCTTCATCTCAA
38832 TTCTTCATCTCAA
1 TTCTTCATCTCAA
38845 CCAGTTCCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCTTCATCTCAA
Left flanking sequence: Indices 38319 -- 38818
TTGGTCAGAGGGAACTTTATTCCCCTCAAGTCTTCCATATTGTGGATTCCCTGGCTGGCACCTGA
GGATTGCCTTCTCGATCAGGAGTGCTTGGGAGTCTATTCGCCCCCGGGGTAACAAGGTGGAATGG
TATAAGGTAGTTTGGTTCAACCGAATGATACCCAGGCACGCGGTCATCCTTTGGCTCGCTATGAG
GAAGAATTTGAGCACTTTGGACAAGCTGGCCGCCTTTTTTATTTCTCATCAAACGAATGGCATCT
TCTTCTGGAAATCCTAGCTATTCTTAGCATGATATTGGGGAATCTCATTGCTATTACTCAAACAA
GCATGAAATGTATGCTTGCATATTCGTCCATAGGTCAAAAAGGCGGATGGAAGATGGCCTTCTTA
ATGAGCTCTCTCGCTTTACTTTATCGGTAGAGCATTTATTGCTAGATCGGATTGAGAGTGACTTC
TTCCGCTGTCTACGTTTTCAAACTCATTTCATCGGTGTCGACATT
Right flanking sequence: Indices 38845 -- 39344
CCAGTTCCGGCTTGCTCCGCACAGGCTACATCTCGACCTTTTATTGATATTCTTTCCATTTTTTT
TTGAAGCCCTTTCTTCGGTCCGGGGGTACCACGCAATCCGTTTAGATCTATTTCAGTTGCCAATG
AAATGGAATATGGGGAACGCTCCAAGGCGTGACGATCTATGCACCGCCATCAAAATGGATCCCCT
TACCGTAAACAGGGCCGCCCTTTACACTCTAAAGCTGGAAAAAAAAGTCTCTTCCCCGCTCTTAT
CCTAAGTCTCCTACAAGCAATTAATTATGATCGATGCGGCCGATCCTTGGATTTGAACGGGGATC
GGCCGATTGAGCCCCATCCAACCAGTAACGACGGGATTTACCGCTTACCCGACCTTGGGGAGGTG
AGGGGTACGGCATGCTTGGGTGTTATGGAAGTGATCGATTATCCACTCGCCCCTTATCTAAGGTA
GGTTGGTTGCTCATTGGCCAATTCCATCTCAGGGGAAAAAGATAC
Found at i:89003 original size:65 final size:65
Alignment explanation
Indices: 88922--89050 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
88912 CACAAACTTA
88922 GCGTGTTTCTATACGGGTCCAATTTTCCCCTTATTGACCCAGATAATAATAGCCTTATTGACATT
1 GCGTGTTTCTATACGGGTCCAATTTTCCCCTTATTGACCCAGATAATAATAGCCTTATTGACATT
88987 GCGTGTTTCTATACGGGTCCAATTTTCCCCTTATTGACCCAGATAATAATAGCCTTATTGACAT
1 GCGTGTTTCTATACGGGTCCAATTTTCCCCTTATTGACCCAGATAATAATAGCCTTATTGACAT
89051 GGATAATCAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (65 bp):
GCGTGTTTCTATACGGGTCCAATTTTCCCCTTATTGACCCAGATAATAATAGCCTTATTGACATT
Left flanking sequence: Indices 88422 -- 88921
ACAATTTGTGCAATCACTCGAAGGAGATGCCTTTGTATGATTGGACGATGGATGTTCTCCGTCGC
TTACCGTGTGACGGGACCTTTGACCAGCCAAAACCTTTGATTCGGCTAACGGGTCGGTCCATAGT
TTCTAGTTGTGACCTGACTGCAGCTACTGATAGATGGCCTTATCAGCTAATCTCTCAGTTAGTCG
AGTCTTGGTTCGGTAGGGGAATCGCGACCGCAGCGATAGATACTTGCCTAGTAAGCAACTCTATC
CACATACTGCCTCCTTGGTCTGATAAACCAACTGTAGGTATGTATGTCTGTGGTCAGCCGTTGGG
TTTCTACTCTTCTGGGCCTCTGTTCACACTATCTCATGGTTTTCGTTGGTCAACAACCAACAAAA
GTTCTCCTTTGTTTAGTTCTTTCAAAGTCTCTCTCTTTTTTTCGGTATGTCGCCCCGCTCCCTAA
GGGGCCCTTTTTTTTATATAGAAACAAGTATGAAACACAAACTTA
Right flanking sequence: Indices 89051 -- 89550
GGATAATCAAGATTTTCCCCCTATTGATGATAGCTCTTTTTCTTCTTCAGATTATATGAAAATCT
CCATTTCGGGTTCGGGTTCTGAACTGTCCTCAGTTTCATCAACCCACTCTGATCCCTCAGATTCT
TCCATAGACAGTGTAGAAAGTTTAGCTTCGCTTCATTCCACTATCGTGGCCAAAATGGATGTGTT
TTTTAAAGACAGGGGAATGATAATTCCCGACGACTGGTCCACCTATGAGATCCTCAAGCAGCTTG
TTATCAACGATGAGACTTTATTTAATGAGACTTCCTTTTTATATGATATTCTTTTTGATCTTTCT
GTTTCGCAAAACCCTTGTTGGGTTGAAACAGCCATTGATTCTATTCAATTAATACAATAATACAA
ACAGTAATGCAAATGAAACTCAAAATTAGGTGCGGCTGTCGGGATCCTCCTCCCCTCCCCTATTC
CCCAAAGTCGATTCGATGAACATGCTACCCCTGAACGGAGGCCCC
Found at i:93273 original size:18 final size:18
Alignment explanation
Indices: 93252--93287 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
93242 AGCTCGAGAC
*
93252 TGAGACTGAGCTTGAGCT
1 TGAGACTGAACTTGAGCT
93270 TGAGACTGAACTTGAGCT
1 TGAGACTGAACTTGAGCT
93288 AGAAGCCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (18 bp):
TGAGACTGAACTTGAGCT
Left flanking sequence: Indices 92752 -- 93251
TATTGCAAGAGGCAGGCTTCCCGGTCAAATTGAAGGGTCTTTCCAAGAAGGATAGTTGAGTAATG
TATGGTTTCGGGACGGAATGACTTTTCTGGTGGTTCACTGGCAGGTTGGGAATCCGAATATCCCA
CAATGACAGAGTTCACCGAAATAGGATTGAAAGATATAGTGACTGAGCGTGTACCCTATCTAGTT
GTTGCTAGTTTGGCTTGTGATGATAGTTTAGTAGTATAAAATAAGTCAAGTATAGTACATCGAAG
TACGGAAGGAAGAAGAGATGAATCCACTCCAAGTCCCTTTTGTGTGTGGATCTTATGGATCTCCT
GTATCGACCGGACTAATAGTAAAATAGGGTTAGATTGCCTTACCACCAGTAGTTGAAAGACAGCG
TTTCAGGCCCATAGTTGTATTGAGTAAGTTGGGTAGCTCAATTCCAATCTTTCAGCCTAGGCCTT
TTTCTTACTGGAAAAGCGATGCCAGGAGTCGTGCTAGCTCGAGAC
Right flanking sequence: Indices 93288 -- 93787
AGAAGCCGAACCGCTTACCAACAGTTTTTTTTCCCGGTTTCTAACCGCAAGAGGAAAGGAAGAGG
TTTAGGGAGGGGGAAGGGGACCGAGAAGGAGGGATCGGACATTCAGTTCAAGGTGGAGAACCCGT
TCAACACAGCAAACTATTTGTCTTTGGGGTTACCTTTCTGTCATTAAAACAGATTCAGATACGAT
TGGAGTCACTTGACAGGGGCATCTCTATTGAATCCCCGGGTTGGCACTAAAGAAGGAGGGTTCCA
CTTAAGTTGAATTCCGTTTCGTCAGGGGCTCCCCAAACTCTTTCTATTGCGAGCTTTAGCATATA
CTTCTTTGTCCGTAATCACTGGCTTTCAAGGTGTATACTTAGATTAGAGCAAAAGGAATGAAACC
AAAGTAAACCATACTTTTGGAGAGCAGAGTTGACGTCCTACTTATACTACAACTCTTTTGATTTT
CCGATCAGATGCTATTCCTACTTTTGATTTTCTACTTTTCTGGTG
Found at i:93274 original size:24 final size:24
Alignment explanation
Indices: 93242--93287 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
93232 GAGTCGTGCT
93242 AGCTCGAGACTGAGAC-TGAGCTTG
1 AGCTCGAGACTGA-ACTTGAGCTTG
*
93266 AGCTTGAGACTGAACTTGAGCT
1 AGCTCGAGACTGAACTTGAGCT
93288 AGAAGCCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (24 bp):
AGCTCGAGACTGAACTTGAGCTTG
Left flanking sequence: Indices 92742 -- 93241
CTGGACCAACTATTGCAAGAGGCAGGCTTCCCGGTCAAATTGAAGGGTCTTTCCAAGAAGGATAG
TTGAGTAATGTATGGTTTCGGGACGGAATGACTTTTCTGGTGGTTCACTGGCAGGTTGGGAATCC
GAATATCCCACAATGACAGAGTTCACCGAAATAGGATTGAAAGATATAGTGACTGAGCGTGTACC
CTATCTAGTTGTTGCTAGTTTGGCTTGTGATGATAGTTTAGTAGTATAAAATAAGTCAAGTATAG
TACATCGAAGTACGGAAGGAAGAAGAGATGAATCCACTCCAAGTCCCTTTTGTGTGTGGATCTTA
TGGATCTCCTGTATCGACCGGACTAATAGTAAAATAGGGTTAGATTGCCTTACCACCAGTAGTTG
AAAGACAGCGTTTCAGGCCCATAGTTGTATTGAGTAAGTTGGGTAGCTCAATTCCAATCTTTCAG
CCTAGGCCTTTTTCTTACTGGAAAAGCGATGCCAGGAGTCGTGCT
Right flanking sequence: Indices 93288 -- 93787
AGAAGCCGAACCGCTTACCAACAGTTTTTTTTCCCGGTTTCTAACCGCAAGAGGAAAGGAAGAGG
TTTAGGGAGGGGGAAGGGGACCGAGAAGGAGGGATCGGACATTCAGTTCAAGGTGGAGAACCCGT
TCAACACAGCAAACTATTTGTCTTTGGGGTTACCTTTCTGTCATTAAAACAGATTCAGATACGAT
TGGAGTCACTTGACAGGGGCATCTCTATTGAATCCCCGGGTTGGCACTAAAGAAGGAGGGTTCCA
CTTAAGTTGAATTCCGTTTCGTCAGGGGCTCCCCAAACTCTTTCTATTGCGAGCTTTAGCATATA
CTTCTTTGTCCGTAATCACTGGCTTTCAAGGTGTATACTTAGATTAGAGCAAAAGGAATGAAACC
AAAGTAAACCATACTTTTGGAGAGCAGAGTTGACGTCCTACTTATACTACAACTCTTTTGATTTT
CCGATCAGATGCTATTCCTACTTTTGATTTTCTACTTTTCTGGTG
Found at i:116202 original size:18 final size:18
Alignment explanation
Indices: 116176--116211 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
116166 GAACCGGTCA
* *
116176 ATCATAATTTCGAGTTTC
1 ATCAGAATTTAGAGTTTC
116194 ATCAGAATTTAGAGTTTC
1 ATCAGAATTTAGAGTTTC
116212 GCTTGCAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (18 bp):
ATCAGAATTTAGAGTTTC
Left flanking sequence: Indices 115676 -- 116175
TGCTAGACAGACAAAAAGATAGTGATGGTTCCTCTTTGAGAGCCCGAAGGGCAACGTACCTAATA
GATAAAGGATTTTTCAAACGGGAACTCATCTTGCTTTGAGTAGTTCAATTCGTTTTGGCCAAAGC
GCAATTGGTGATGAGCACGCACAGGAATCTCGATAGGATACTATCCGTGTAATTCCATTCTGCCA
ATCATCCTTTTGATGTACCACTCTGCGTCCCTAGGAATAAGAAGTGATGGACTTGGGTCCGCTCT
TCAAATAGGTACCTAAAATCTTTATTATTTGCTTTTAGCCACCGATCGGTAAAGTCTTCTCATTC
AAGACGACTGGTTATAGATGGGGCTTATCAGGCCACCACAAATGCACGATCCATCACCTCGTCAT
AATATCTATTGGAACTAGTCTTGAGTCGGTGGTGGAACTCAGTGCAACCGCGAGTAGAACTGGTC
AGACTCGCTCGTGGAACCCACTGGAATCCATAATAGAACCGGTCA
Right flanking sequence: Indices 116212 -- 116711
GCTTGCAAGATCCCATCCCACCATGTCCGAATTGATAATAACCTAACCTCGGATCCAAGTACAAC
ATCCGCTGAAGCTGGGCCAAGTAAAGTAAATCGAAATCGAAGTCGGCCAATGGATCAAATGAGAC
CGAACCCCTCTCTTCTTGAGGATTGCTTCCTTGCCACGGCTTAGCCTGAGACGGGACTGACTTTT
CAGTATCATAGGAGACTAGGGCTGACCATAAGATTACCCAACTAGATCCTTACTTGCTTCCTTTA
TGGTCTCTCTCGAGAAAGAGAAGAATTTATATTGATTCTTTTTTGCTTCAGATTGGCTTAGTCTT
AAGTCCTTCCACTGGCGGATCTCCTTGTAGATCCACTGATAGGTAGATTTTTTTATGATTTATTC
AGTGTTCCCAGACGAGCTAGTTCTTCAATGCCAATGCCCATAATCCTGGAATCAGTGCCCACGGA
CGAGTTAAGGAATCAGCGCCCCCGTCCTCATCCTTTACCCGATGG
Found at i:122741 original size:12 final size:12
Alignment explanation
Indices: 122720--122757 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
122710 TGGATTTCTT
122720 TTTCTTTATATA
1 TTTCTTTATATA
* *
122732 TTTCTATATATC
1 TTTCTTTATATA
122744 TTTCTTTATATA
1 TTTCTTTATATA
122756 TT
1 TT
122758 ACTGGTAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTCTTTATATA
Left flanking sequence: Indices 122220 -- 122719
ACTCGTTGGTTAACAGGAAGATTCTGGACAGAAGTCTTCAAACAGTTATTGGATCTGGGGGGTCC
AAGCTGAACTTCTCCACGAGTCTTCATCCGCAGCCTAAGGACATCTAAGCGCCGAAAGGATCAAT
GCGTTATTGGAGGAGTACCTGAGGCACGTTGTGAGTGCCAACCGGGTGCAGCTGCTGGACGTAGC
ACAATTTAGCTAAAACTGGCAAAAAAGCTCTGCATCCGTCCGTTCGAGTTAGCGATAGGCCAGCA
ACCTTTGGCTCCCCACATGGTTGTGGCCGGCTACACGGGATCGTCACATGCTATATCTTCAGAGC
CTACTCCTACAAATCCACAATAGCGATGGAATCGCATCGCATCGGGAATCAAAAATGTGGCCAAG
GATCGACTGCTTTGATTGGTTGTGTCTCAATCGGAAACTTCTCACCGGGGGATACATGGCCCATT
CGTCCAATGTGCAATCGGGCCGAATATATGAAATTTGGATTTCTT
Right flanking sequence: Indices 122758 -- 123257
ACTGGTAATCGATAGTGATCTTGATTCGCTCAATCCTTCTGGTTCGGGGAGGTACGCACAGTCCA
GGGAGTGAAGAAGGCATCCGAGACGCACGCCTTTATCTTATTCTTTTTCGTCTCTTTGTTTTGAT
CAGTCATTCAAGCTCTAGCTAGCTGATAGCAGCATCATTGGAATGAAATCCAAATGGAAAGGCAG
GCAACCGGGAGAATCGGAGTAAGATGAGAATGAATTCTACTAAGGTTGTAAGTAATAGAGATCTT
TCTCCCGCGTCTATAACCAGTCATACTAGGTGGGCTCTCTCCCATCTTAGTGAAGTTACGAGGTT
AGCAAGAAGCAGTGCCCTTCCATCCCTGTCCTGTGTGTGGGATTAGAAATTCGTTAGTATCGGTT
GGCCCCTACTCTATAATGGGGCAAGAGCAGCATAGCAAAGTCATTGCAACTACCTATTCGCTCAC
TCACATCTCGCCCATCCCCTATAGATAGTAGGGGGGCTTTCTCTA
Found at i:123473 original size:14 final size:14
Alignment explanation
Indices: 123454--123481 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
123444 CATTTGCCAG
123454 ATTCAGACTGATTA
1 ATTCAGACTGATTA
123468 ATTCAGACTGATTA
1 ATTCAGACTGATTA
123482 GATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
ATTCAGACTGATTA
Left flanking sequence: Indices 122954 -- 123453
CAACCGGGAGAATCGGAGTAAGATGAGAATGAATTCTACTAAGGTTGTAAGTAATAGAGATCTTT
CTCCCGCGTCTATAACCAGTCATACTAGGTGGGCTCTCTCCCATCTTAGTGAAGTTACGAGGTTA
GCAAGAAGCAGTGCCCTTCCATCCCTGTCCTGTGTGTGGGATTAGAAATTCGTTAGTATCGGTTG
GCCCCTACTCTATAATGGGGCAAGAGCAGCATAGCAAAGTCATTGCAACTACCTATTCGCTCACT
CACATCTCGCCCATCCCCTATAGATAGTAGGGGGGCTTTCTCTAGGTTCAGCATGGCATATTTAG
AGCCGACTCCAGTCAGGGGAAGGAAAAAGAACAGAGATTGCATGCAGCCACCTCATATTTTCACA
AGGGAAGGACTGGCATTGACAATCAAGTCGCCCTACTCTCTCTATAATGGGGGGCCCTATTGATT
CTATAGGCGGTAGGTATGGAAAATGAGTCGTTAACCATTTGCCAG
Right flanking sequence: Indices 123482 -- 123981
GATGAATTTATAACGTTAATATACCCGCCCACTCAGTGCTGGCCACCCAAATCGCGGATAAAAAT
GGAATCTATGGATGGGTGAATATAAAGGACTACCTACCTATATAGAACAGGAACGGAACGTATAT
AACCTTTGAAGACCAGATTCCATGAAAAAAACCGGGCGGGCCCTACTATCTATAGGGGTCGCAAT
GCCTCGCTCCAGTTGCTTAACTTAAGAGATTCGATGGGCAGGTCGGGCCGTCTAAAGACCTGCAA
AAGAAAAGATCCGCCTGCTATGAAACAGATAGTTGCCTCCTTTGCTTCCCCGCATCACCCATCAA
TACTGGTTGCTTAATCTCCCATAGATAGGGCCACTCGGGAATGGGCCCTACTGGTAAGGTTAGCT
CTTCTTTCTCGAATGGAATGAGCTATACTAAACTAAAATAGACGAAAGATGCATGGGCTTTACCT
ACCTCCCCGGATAGGAGACAGATCGTTGAATTGGAACTCGTCGAG
Found at i:124530 original size:41 final size:42
Alignment explanation
Indices: 124473--124553 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 42
124463 GGTCCCAACC
***
124473 AACAAGCAACTCCTGAGC-GCACTGGGGCGAAAGCCGTTGTG
1 AACAAGCAACTCCTGAGCGGCACTACCGCGAAAGCCGTTGTG
124514 AACAAGCAACTCCTGAGCGGCACTACCGCGAAAGCCGTTG
1 AACAAGCAACTCCTGAGCGGCACTACCGCGAAAGCCGTTG
124554 CGCGTTAGCG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 18 0.50
42 18 0.50
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.14
Consensus pattern (42 bp):
AACAAGCAACTCCTGAGCGGCACTACCGCGAAAGCCGTTGTG
Left flanking sequence: Indices 123973 -- 124472
CTCGTCGAGTGGGAGAAAATACTAGAGATTAGATAACTACTAGACTATAGACAGACGAATTCACT
TCACCATTTAAAATAAGCCCCTACTACCTATATCTGGGGCATTCCTACACAACAAAAATAGAACC
AACCCGGGCTTCATTCATCTTGCATTGCATCTGTGCCCGGACGGAACGGACCTATAATCTAAGAT
CGGTACGGAATAGTACGCCCTAATCTTTCCATCCCGGTACTCTTAATTAGCTATAAAATCGGTCT
TCCCCCCATTCCCAGTGTTACGCCTTTGACCATAGCTTTTGCACTATAGAGATAGTGGCCTGCCC
ACTTCGATTTGCCTAGGGGTGTAGATTCATCACCCACCCCTAGCTGCTTTAAGAGATTACTAGCT
ATCGGCTCAAAGAAATTAGAGAGAATAGTAGGATTCGCCTGCCCTTTTGTACTTTCTCTTCAACC
ACTTTAGCTGCTTCTTCATTCATTTATTTGCCTCAGGTCCCAACC
Right flanking sequence: Indices 124554 -- 125053
CGCGTTAGCGCATACGTTTTCTTGGTGCTTCTGGTCTTTCTTCTGACGGTGGGTACACCCCCTTG
GGAATAACCATAGCATGATGCGTCAGAAGGATGGATGCTCGCTCCGCCCGCCTACGTGTAACGAT
ACTGAGTGAGATACCTTGATTCATTCTATGCCGGTGTGCCCGTTCCTATTTCCTATCCATTCTAA
GTATATCCGTTCTCAGGTACACCCCGCCCCGCAGCCCTACTATCTATAATGGGGCCGCCCTTCTA
AGCTTACGTAAACCTCCTCTCCCTTCGCGACCCTCATTTCGATAGAAAAGTGTTTCCACTTAGAT
AGAATTCCGTTCCGTCACGTTCCGTCCTTACCAGGGAACTATGCATGCCCAGGTTCTCCGATAGG
GTTCCTCGCATACTCTATTTCTCTCTTCTTCCGGCCTCGATAACACAGTTTCAAAGCACTGCCAA
GGAAACGAATAGATATGTTTTTTTTCCCAACGGATATAAGAGATG
Found at i:176245 original size:6 final size:6
Alignment explanation
Indices: 176234--176259 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
176224 TTTCTTGCCT
176234 TAGGAA TAGGAA TAGGAA TAGGAA TA
1 TAGGAA TAGGAA TAGGAA TAGGAA TA
176260 AGTATGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (6 bp):
TAGGAA
Left flanking sequence: Indices 175734 -- 176233
GCCCTAGGATCCCTGGATCGAGAGACCGGGTCGCTCCTCTTGCCTAACCTCGTCAAATGAAAAGC
AGGAAGCTGGGTTTACCGTTTCGGGCTTTCACTAGATATTAGGTTAGGCTTTCGGCCTTTCTCTT
TGATAAGAAGAAGAGGAACTGCCTGAGGGTCTTTCGAGAAGGAAAGAAGAAGAAGGTCAATTCCT
CATCCGAAAATCGATTCTTCTTCGGAGGTAACCCATCCTTCTCGAGGAGGAGATAAGTCCCGGAC
TTAGCGAAAGAGAAGAAAAGAAGCAATGCAACGAAAACGAGGCTAAAGTGGGAAAAAAGTGAGAA
CTTTTTTAGCATACATTCGATCCAAAAGTCAAAGCAAAGGGTTGGCAAGAGTTCTTCCTTTGCCC
CCTGGCCCTGGCTGTAACCTTATTAGGCATATTAGGCATTGGCAGGAGTTGCCCCAAGGGAAGTG
TCTTCATGCCGTCGGTCGATCGATGCCAGTAGCTCTTTCTTGCCT
Right flanking sequence: Indices 176260 -- 176759
AGTATGCATAGGCTCTTCCTTTAACTTGCGTCATTACTCTTACTCTTAGCTCCCGACTACACTCT
TAGCCTCCTCCCGTAACTTTATTCATTACTACTAGTCTCCACTACCCCTACGCTACAATGAGTTA
GGTTAGCCCGAGGCTAGGAATGATTTTTTTCATTTTCCCAAGCTACTTCTTTCATTACACCCAAC
CCCCCTGCGCTACCACTTCTTGAACCAACCCCAGGGGTAACCTCAATTTATTTGTACCAGAAGGC
CATTGAACTTGATGTTGAAGTTGATGAATCAGAAGCTAGATTGGTAAATGCATTCCCTGGGGGAA
GCTACCTTGAAAGAAGTTAGCCTGAACCGGGAAAATCAATCTTTGGAGGCTTAGTAAAGACTCCT
TACCCAGAAGGTAAGAATAATCCGATTCTGCTGAAGGGAAAGAGAAAAGCTATTCTTATTCCTAT
GTGGCCGACCCATAACGCCTTAAAAGGGCCTTGCCCCTTATGTCC
Found at i:221553 original size:28 final size:29
Alignment explanation
Indices: 221519--221574 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
221509 ATCAAAGAGA
221519 GGCCGG-AAGCAAGTCAACTATGTCAACC
1 GGCCGGAAAGCAAGTCAACTATGTCAACC
221547 GGCCGGAAAGCAAGTCAACTATGTCAAC
1 GGCCGGAAAGCAAGTCAACTATGTCAAC
221575 TATATGAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.34, C:0.27, G:0.25, T:0.14
Consensus pattern (29 bp):
GGCCGGAAAGCAAGTCAACTATGTCAACC
Left flanking sequence: Indices 221019 -- 221518
TGTTGACCAACAGAAAGCATGGGAGAAAGAAAGAGTGGTTAGGTCAGAAACCTAAGGCACGCACT
TCAATCCAAAGAAGCAAGACGAAGATCTTTTTTCTTTCTATAAGGAATTACTTAATCCGGGCTAA
AGCACATACATATGGAGAGGTGCAAAGGACAGATGTGCTTTCTGATACACTAAATGCCGGCGGTA
TTTGATTGAAATAGTGCGGTACGAACGACTTTCTTTAATGAAACCTATCTTAATAAGAGGAATAT
GTTCTAGTAACTTAACTTCTAACTTCATCAGACAGAGCAGACGGGGAAAGAGATATTGAATGAAA
GATGTGCGTGAACCGCCCATTCCACTAAGGGCTCTTTCTTTCCCGCCCCCACAAAGGGCTTTGTT
CGTAGAGTCATAATACTCCTTCCTTAGTTAGCGGTGGGAGTCACTGTATAGGACAAAAGAAAACC
ACGAGATCTTTTCTATGCCGGAAAGTCAAAACTCTATCAAAGAGA
Right flanking sequence: Indices 221575 -- 222074
TATATGAGACGCCGGTACCACACTTGACAAACCTAGCGCACTCCCTCTCCTCCGATCATAGATCT
TTTCATCAAATAGGACTCCCTCCTCACGGATACTACTATATGACATGACATTAAGAGAGGCCTCG
TTTTTCATTTCGTTTTTTCCTAGCTCACTCGTAGGTATTGAACTGCAAGTAGCTCCCCTCTCCGA
ACTACACAGACAGAAAAAGTACGGCTTCCAATAGAGTATATATAAATTCCAAAAGGGGGCTTCAA
ACGTGCACTTTTATAGAGCTGTGTAAGCTGCCGAATAAATAGAGTTAGTTATACGCGCCGGGCGC
AGATACTTGAACTATCAAGCGTAGTTCTCTCATCTATCTGAACTTCGAGCTGGCCCAAAGGGGCT
AGACAATCGGAGTACTATTTATTATTCCACCAGGGCGTCCCAACCCCGGCAATCGGAGTGAGGAA
GGGAAGAAAAGACTCTTTGCCGAAGAAAAGCGGATGGGCAAGTGC
Found at i:245448 original size:29 final size:29
Alignment explanation
Indices: 245415--245474 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
245405 TTCGTCTCGT
* *
245415 CCCGTCAGTCAACATTTCTTTCTTCCGGC
1 CCCGTCAGTAAACACTTCTTTCTTCCGGC
*
245444 CCCGTCAGTAAACACTTCTTTCTTCTGGC
1 CCCGTCAGTAAACACTTCTTTCTTCCGGC
245473 CC
1 CC
245475 GCCCAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.38, G:0.13, T:0.33
Consensus pattern (29 bp):
CCCGTCAGTAAACACTTCTTTCTTCCGGC
Left flanking sequence: Indices 244915 -- 245414
CTGTGAGCCAGGTTTTGAAATATCTGGTTCGAAAGGACCAGGAAGGGGGCTAAGTAAACATCTTT
AAAAGAAGGAATGAAGGCGCTATCGGGAAAAGAAATGCTCTAGTCAAGCTCAATCTCTCCTAAGC
CGGGACGGAGTGAGGAAAGCGAGTCAGGTCAAGTATATCGATAGCTTTGTTTGTTTAGGTTTAGT
GGTATCTGTTGCCAATGGTAGGCCTGTGAGCAAGAGCCGGAAAGGCGTAGGCTCCATAGGGGGGC
TCATAAAGGAAGATCTAGGAAGGAGTCCATTTGGCACTATAAGCTCAGTCTCCGGGTTAAGAAAT
AGAGTGATGGAGAAACTGAGAATACAAAGATAGAGAAAAAAGTCAAGATAGTAGCTCGCTTAAGG
TTATGGAAGAATCTCACTTTAAATAAGTACCTTGGTATCAGAGCTGGCTCAGGAGAAGGTGCTTT
AGCTCGACGATTGTGAACAAAGCTTGAGGATCTATTTCGTCTCGT
Right flanking sequence: Indices 245475 -- 245974
GCCCAATCAATATGGAATATTGGCCTTCCTCCTGTAAAGGAGAAAGAGATCAAGGTGATATGGAA
TATCCAATTTCAAGGATCAAGTGAAAATAGAACGGGGTTCTTAGCAGCGTAGCTCACTGTAGGCA
GGAAGGAGGTAAGCGTTAGCTTATTACTCACGAGGGAAGTTTATCTAATATTGCATATTGCCCTG
AAGGCAGGCGAAGAAAGTTGTTGGGGGACGAGTCCCGACACCTACCTCTTCGAACAGAGGGTCAG
GAGACACGAAGAAGCCTTTTTCGCGCTACAGACCAAAAGTCTTTTTAGAAAAAAACTCTTTATTC
GGCCTTCAGTTAGTAAGTACTCATTTTCATCTCTGTTTTAACTCATTTTCCTCTACGGTTTCCCG
TAATAGTTAACCAATGGGGTTGAGGAATAGATTACTGCCTACGTTTGGCTTAGGAGTGTAGATCC
CGTCTTTGGCTCTTGATTGATTGGGAAAGCGTTGACTCAAGCAGA
Found at i:256957 original size:21 final size:21
Alignment explanation
Indices: 256931--256971 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
256921 CGAAGTACAG
*
256931 CTTGGAACTGGCTGCTTTCTA
1 CTTGGAACTGGCTGCCTTCTA
256952 CTTGGAACTGGCTGCCTTCT
1 CTTGGAACTGGCTGCCTTCT
256972 TTCTCTCTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.37
Consensus pattern (21 bp):
CTTGGAACTGGCTGCCTTCTA
Left flanking sequence: Indices 256431 -- 256930
CCATAACCTCACGATTCATTACTTATTCTTGTTCTTGTTATCACCTAGCAACTCCTGGTATCAGA
CTAACTAGAGCCGCTTGGCTTACCTTCTTCATAGAATGCTTCCCGCGAAGTAGTGAAGGGAGAAG
AATAGTCACTACACCTTATTTGCTTTCCCGTTGTCCTTCATCCGTTCTGTCAGCAGTACGCTTCT
CCTCAACCTTCGGCTTACCAAACTGCCGTTATCTTGTCTTATGAGTTGTGACTTCACTGGCTGGC
CCTTAGTCACTTGAATGATTCTATTCATAGAAAATCTAAGGATTGCCGTCTTTCATTTACTGTGA
ACTAAGGGGTTTAACCTGGGCTGAAAGCTTCCATGTCATCTTTATCAGATGAAAGAGACGAAAAG
CCCGAAAAACAAAGGAAATGGCGGATTATTGCGAGCTCAGGTTGGGTTGCTTTTAGGCCGAAGCG
ATGGTAATATTGGTAATCGTTGAGTTCTATTAATTCGAAGTACAG
Right flanking sequence: Indices 256972 -- 257471
TTCTCTCTGCGAAAAAGGTCTATCTCTCAACTCATTCTTGCCGAGCAGCTGGAAAGCTGAATAAG
GTGCGTAGCTGTAAGGAAGGGGGAAATTAATAGAAAGAGGAAGTCTCCTTCCGAAGGTCAAATCC
ATTGGATACAGAATCCTCATCTTCAAATTCACGTTCTTTTGGTATAATTCGGGGGGCTTGCTTCC
TTTGTGAGAAAGACGTGAGGGAATGTGCACGATTGAATGACCATGACTTTTCGATACTCACAGCC
AGCCCCTTCTTTTTCTGCCTGCCACATCTCTCTTCGATAGCGGGGGTAGAACCCATATAGATTCG
CAAGCACGGACTCGGCATAATCATTAGTTTATGCTGGAACGCCGTGGACAATTACTCACAAGCTC
GGCCTCAGTCAAGCAAAAGAGTGAAAGCGGCTGCCCCTCCCTACTGTCAAGCAAAAGAAAAGAGC
CAAAGCGACTTCCCCTCCCCCCTTCACGAGGTTGGCCTACTCATG
Found at i:271821 original size:19 final size:19
Alignment explanation
Indices: 271797--271834 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
271787 CCATTTCGAA
271797 TAAACAAAAGAACGAAATT
1 TAAACAAAAGAACGAAATT
271816 TAAACAAAAGAACGAAATT
1 TAAACAAAAGAACGAAATT
271835 GATCCAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.11, G:0.11, T:0.16
Consensus pattern (19 bp):
TAAACAAAAGAACGAAATT
Left flanking sequence: Indices 271297 -- 271796
GATTTGGTTTATTTTATGTTGCTTCTTATCTAAATCTATTAGTTTCCTCATTATTTGTAACAGTT
CTTTACTTGGGTGGTTGGAATCTTTCCATTCCGTACATATTTCTTCCTGAGCTATTTGAAATAAA
TAAAGCGGATGGAATCTTTGAAACGACAATTGGTATCTTTATTACATTAGCTAAAACTTATTTGT
TCTTGTTCATTCCTATCACAACAAGATGGACTTTACCTAGATTAAGAATGGACCAACTATTAAAT
CTTGGCTGGAAATTTCTTTTACCTATTTCTCCAATGTCAATAATTGACGATTTTACAATTCGAAC
AGTTTTGAATTCGCCTCAAAGAAAAAACGGATAAACCTCTTGATTAAAGAGTAATTGCAAATTAC
TAAGGTTTCGTTTTGGTAGATAAGGGGTCTTTCTCTTTGCTTGGTCAATAATTACAAATTCCAAA
ATCATTTCGAAATATATAGTTTCAATTTCAAACAGCCATTTCGAA
Right flanking sequence: Indices 271835 -- 272334
GATCCAATAACTATACCCGCATTAACTCACATCTCTTAGATTAGAATTTAATTCAATTGGGAATG
TCTCATAAAAAAATTTTTCCTGGTCGGTTCAATAAGGTCATGAAAAACATTTCGATTTATTTATC
TCTTATTTTAATATAATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATC
GGGTCTTATAGTAGGAGGTCTGGGAGTAGTATTACTTACCAACCCAATTTATTCTGCCTTTTCAT
TGGGATTGGTTCTTGTTTGTATATCCTTATTCTATATTCTAGCAAATTCCCACTTTGTAGCTGCT
GCACAGCTTCTTATTTACGTGGGGGCTGTAAATGTTTTAATCCTATTTGCTGTAATGTTCATGAA
CGGTTCAGACTATTCCAAAAATTTTCATTTTCAGCTTTGGACTATTGGGAATGGGGTTACTTCCC
TAGTTTGTACAAGTATTTTTTTTTCACTAATCACTACTATTCTAG
Found at i:280766 original size:66 final size:66
Alignment explanation
Indices: 280660--280791 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
280650 TTTGCATTAT
280660 ACAATTTAGTCCTTTTTTCGAGTACATCCAGGGTAAGAGATCCTTTATCCAAAACTTCAATTCTA
1 ACAATTTAGTCCTTTTTTCGAGTACATCCAGGGTAAGAGATCCTTTATCCAAAACTTCAATTCTA
280725 C
66 C
280726 ACAATTTAGTCCTTTTTTCGAGTACATCCAGGGTAAGAGATCCTTTATCCAAAACTTCAATTCTA
1 ACAATTTAGTCCTTTTTTCGAGTACATCCAGGGTAAGAGATCCTTTATCCAAAACTTCAATTCTA
280791 C
66 C
280792 TTATAAACTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (66 bp):
ACAATTTAGTCCTTTTTTCGAGTACATCCAGGGTAAGAGATCCTTTATCCAAAACTTCAATTCTA
C
Left flanking sequence: Indices 280160 -- 280659
CAATATTGTTAACTCCGTCTATAAATCTTTTACATCAAAATTCAAATCATTTTTTCGATTGGTAT
GAATTTGTTACAAATTCAACCTTTTCAGTTAGTATAGCGTATTTGGGAATCATTATAGCGTCCTT
TTTATATAAGCCCTTTTATTCATCTTTACAAAATTTGAACATACTTAATTTGGTTGCTAAAAGAG
TCCCTAATAGAATTCTTTGGGACAAAATAATCAATTTGCTATATGATTGGTCATATAATCGTGCT
TATATAGATGCTTTTTATGCAATATCCTTAACTGAAGGGATAAGAGGGTTAGCCGAACTAACTCA
TTTACTCGATAGACGCGTAATTGATGGAATTACAAATGGGGTTGGTATTACGAGTTTTTTTATAG
GGGAAGGTATAAAATATGTAGGTGGAAGTCGCATCTCTTTTTATCTCTTATTATATTTATTTTAT
CTATTAATCTTATTATTAATTTGCTACTTTTTCTTTTTGCATTAT
Right flanking sequence: Indices 280792 -- 281291
TTATAAACTCCTTGTTTAAGTTGTTCCTTTTTTGTTCATTGGTGTAACTCCAATGATTATACAAT
TCATCAGAGGATAGTTTTTCCGTTGTGAAAAAAGACATCCTTTTTTGTATCATTTCCAAAAAAGT
TGACAAACTTGCTGGATACGTAAAAGAGATCCTTTCTTTTCCATCACTTTGACATGTATAAAAAA
AATAGTGTGCCATTTCATTTCTTACAGCATTTTCAAATCGATTATTTTTTTTATATCGAAATGGA
CGATTCCATCGTTTATAGTCGAAAAGAAGAGTCGCAAGAGGTTTTTCAAACCATAATAAATATTT
CTCTTCTTTTTCTTTAAATATTTCTAACTTCGAATTTTCTTGATTCCCATCCAGATAAGAAGTTT
CATATCCATTCACTCGGATCTCTTCTGTTTCCTCGATTTTGTCCGGATCCTCCTTTTCTTCCGAA
AAAAGGGAAGGAGAAGGATCTTCTTCGGTGGATACCTCTTGTTCC
Found at i:282199 original size:18 final size:18
Alignment explanation
Indices: 282176--282211 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
282166 GATTATTATA
282176 TGATGATTTTTCAACTTT
1 TGATGATTTTTCAACTTT
*
282194 TGATGATTTTTGAACTTT
1 TGATGATTTTTCAACTTT
282212 CCATATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.56
Consensus pattern (18 bp):
TGATGATTTTTCAACTTT
Left flanking sequence: Indices 281676 -- 282175
ATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTG
AATGCTAAGATTACGCATTGAATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGT
TCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAAT
GCTAGATGCAGAGGCGCATAATAGATCGATATGAACATCATGAGCTGTCCCGCAATAAAACCTGT
TGTTGCGGATACCTTCTTCTCGGTTCCTTCTTCTCCTTCTTCCATAACCCGAGCTCGGAGAAGGA
AGAGATAAGAGGGCCCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACGACC
GAATTGATTATCTTCATGCATAAGGATACTAGATTACCTAGTATAAAAGATTGAAAAATCATCAC
AAACCTCCCCTTTTTCTTTTCTATTTCAATTTCTGGATTATTATA
Right flanking sequence: Indices 282212 -- 282711
CCATATATAGAAATAGAAACAGATAGACTAGAAACGACATCTCTTATGTCAATTCTTATGTCAAT
GACACCAAAGGGATATTAAATGAATGGAATTGGGATATGGATGGAATATAATGAAATAGAGCCAC
TTTGAGGTTCCCTATGAAACGAGGCATGGAACGGAGCCACTACGAAGAAGTTCCGGGAGTTACGA
AGGAAACTTCGAGTTCATATTGGTCATGGGTTGAGAACGGGAATTGAACTCTATGAGATAGAATC
TCCCGCTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCG
AATCCTACTTGGGGAGATTTGATTCATTCCGAATTAAAGAATTCAGAATGTCAGAATGAAAGGGT
TCGCTTTGACCGTTAAAAGTAGGTAACCCGTTCCCTGTGTCTTTGTTTCTATTGCATTCTATCTC
ATCGTATCACATTCTGTTCTGCGATATTTGAGAATCACCGTCAAT
Found at i:283041 original size:21 final size:22
Alignment explanation
Indices: 283000--283041 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
282990 ATACTATATT
**
283000 TAAAAAAACAAGAAATGGTAAA
1 TAAAAAAACAAGAAAAAGTAAA
283022 TAAAAAAA-AAGAAAAAGTAA
1 TAAAAAAACAAGAAAAAGTAA
283042 GGCTACTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12
Consensus pattern (22 bp):
TAAAAAAACAAGAAAAAGTAAA
Left flanking sequence: Indices 282500 -- 282999
AGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCTACTTGGGGAGATTTGATTCATT
CCGAATTAAAGAATTCAGAATGTCAGAATGAAAGGGTTCGCTTTGACCGTTAAAAGTAGGTAACC
CGTTCCCTGTGTCTTTGTTTCTATTGCATTCTATCTCATCGTATCACATTCTGTTCTGCGATATT
TGAGAATCACCGTCAATACCTCGGTGTAGGTCCGGGATAATCCTTTGTTCCATAGTCCTGGGGCT
ATTTACAATTAGCCAATTAAGAATTCTCAGATGTACTAGTACTAGCAAGTGCATCAAAGATGCAG
TCATCGATTCTCCCGAGAGGCCACAATTACCGCGAGCAAACATATTAATGACGAGGAACGCATTT
TTGCTATGCTACTAATACTTGCTCTGCTATTCTGCCCAAGCCTGGCCGAGGAAGAGTTACGGGGC
GTAAAACAAAAAAAAATATGCCGATTGGGCCGGGCATACTATATT
Right flanking sequence: Indices 283042 -- 283541
GGCTACTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTGGGTCCGCTATCCCGATC
ATGATTTTCCTACCCCCAGAGGGAAGGGTCCTTCCCTTTTTGGCCGGTTGTGGGCGAGGAGGGAT
TCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCGCCCC
GTCTACACTGGATCTGTTCCCGGAAGTACCCTAAAAAAAAGGAACCTTTTAGGAGAAGAACCATC
CCTAACATTACAAGAAATAAGTTGAAGACCAATAGAATTCCAGAAAGTCAAAAAAATAGAAGTCA
AATTAACCACGAAATACAAACATAATCAAGTTTGTGAGTGCGACAGATGTTAAGCAATTCCATTG
ATAAGGGAAGGGGCTCTAATCTTCAAAAACCGGGTCGCAGGATCGGTTCACTGAAAATAACACAA
AGTCAATCGAAAGCTTGAGTTCTTCATTCGGAACCAAAACTCGAA
Found at i:299327 original size:21 final size:21
Alignment explanation
Indices: 299297--299336 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
299287 CGACCAAAGG
299297 CTCAGCCGAAAGAGAAACTTT
1 CTCAGCCGAAAGAGAAACTTT
* *
299318 CTCAGTCGAAGGAGAAACT
1 CTCAGCCGAAAGAGAAACT
299337 GAATTCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (21 bp):
CTCAGCCGAAAGAGAAACTTT
Left flanking sequence: Indices 298797 -- 299296
TGGATCGAGGGGATAGACCTTCTTCTCTTGGTCTTGGGTCTTTTTTCTTTCATTGAGGGGGAAGA
GTCGAGTCAAAGACACCCGAATGAAACGAAAGGAATTATGTCAGGGCCTTAAGCCCCCACCCAAG
GGAGCGTCCCCCGTATTCCCGACATGCTAAGGGAATGGAAACTAAACAGTAAGCTATGCCCGGAG
AGAGAGATCTCTCGTTAGGTCTTGGGAATGTTGCTAATAAGGTGAAGGCTAATATCTCGCCGAAA
GGTGGGAGGGGTGCCGAGATCCTGGGCAGCGGGATCTTCCCATCATGATCGACTAAAGGGAAAGT
CGCACAGAGATATTGGTTCGAATCCAATTCATGATTCCAGTTCAGAAGGACTGAATTCAATCGAA
GTTTAGGATGGAGCTATCACTAATAGACAGATGGGATTGTTTGCAACAAAGTGTCTATATAGCAA
GGGCTCTTGAAACTATATCCTATAGAATAGGGACTCGACCAAAGG
Right flanking sequence: Indices 299337 -- 299836
GAATTCAAATCTCACTTTAAGACGGTTGTTAGCCGTCTCAGTAAGGGTAGTGAGCAAGTTTAGGT
TTAGGAATAGGAATGATTCTTAGGAAGCGAAGCAACCTCTTCTCTTTGCGTGACTCCTTCTTAGG
GCGTGAAAGCATTCCATCGGGCTTCCCGCTGAAGGATGTGTTCAAGTCGCTTCTTTTCCGCTTTC
AAGCTGAATCAAGTGGGGAAGATGGGAAGTCCAGGTCAAGGTTGATTGATTAGTTCTGTGGTCAG
GTGAAGGAGAAAGATTAGCAGCTTCTTCTATAAACGGAATTTTATACTTGCCATGCCAATAACCG
GATTGGATCACGATCCAGTACTGTAGGAAGAAGGAAAATCTCTTATATGAATAGGATTCAGTGCT
CAAGTCGTCCAGTCCCGAGTGGGGAAGATTGCTTCTATCCGTCAAGCATTGGAGTCGTGCCTGAA
TCCTTTGTTCGTTCTTCTATCATCTGCACTTGCCTTCCTCAAAGG
Found at i:339865 original size:65 final size:65
Alignment explanation
Indices: 339761--339892 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
339751 AGAATCATGA
339761 AATTCAAGCCCATCTTTTTGGCTTAAAAAGTCAGATGATGGACAAGAGGAGGTCGCCCTTTTAGT
1 AATTCAAGCCCATCTTTTTGGCTTAAAAAGTCAGATGATGGACAAGAGGAGGTCGCCCTTTTAGT
339826 AATTCAAGCCCATCTTTTTGGCTTAAAAAGTCAGATGATGGACAAGAGGAGGTCGCCCTTTTAGT
1 AATTCAAGCCCATCTTTTTGGCTTAAAAAGTCAGATGATGGACAAGAGGAGGTCGCCCTTTTAGT
339891 AA
1 AA
339893 GTTTCGGCAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (65 bp):
AATTCAAGCCCATCTTTTTGGCTTAAAAAGTCAGATGATGGACAAGAGGAGGTCGCCCTTTTAGT
Left flanking sequence: Indices 339261 -- 339760
ACGCGGCATATTTTAGTGCAAGCAAGCAGCTATTCCATTGCTGTTCTCTCTTGGTCCATGCAGCG
AGAAAGCATAGAGAGCAAACAGGATCGATCGCCCATGGACCGATTCCTCTAGCTCCAAAACCATG
TGTCGGTCTTCCATATGATCGGCTTAATCCATCCTTCTTCCGGCGGGTGCCACTTCACTAAGGTT
TTCCTTATTCAATCCAGCCGGGACAGCTTGAGCTATTGCTTTCCATCTCTGAATGAGACTTCTTT
CCCAAGGAATGAAGGAGTATCTACTTTCAGCCTATGCAATGACTGATTCAGAGATGGAGGCTTCT
ACACAGCTAATTAGTCGACTTGCAGGGAGAGCTTGATCTTGGAAGATTCTTCTCTTTCTCTCTAG
TCATAGGTTCCACACTGGGCTGATTCTCCAAATGATTTGTAAGGTCTTTGACCTGAACCTCGAGG
GCCAAGCGTACCTCCCTTCAGGAACAGGATAAAGCAGAATCATGA
Right flanking sequence: Indices 339893 -- 340392
GTTTCGGCAGAGGACTTAAGTCCATGAGTTGGATGCCCCGCCGCCTGTGAGGACTGCTTTCAATC
AAAAGGAGATTCTAGATAAGCGACTTGCCTTCCTCAGGATTAGCCATATTTTTTGAATGCCCGGG
AGTGTGAAGGGGGACATAGCGAGTAGTTTCAGTGGAAGTGGAAGCAGCAGCGAAACCCACCGGGA
ACCAGATACCAGTAAGAGCAACCGCATGTGGAAGGCCAACAAAGGACCAGGGGTAGGCTCAGGAG
TACCCGGAGGAGCAAAGAATCAAGCCAGAGGAATAGATATGATAGACAAGGGAACGGATCGGATC
CCTAGAAGGTGGAGTACGCTCAAGGCAGTGACATGGAAAGATTTTATCCGTGAATCAGTAGTCGA
TCCGGAGACCTTGTGTGATCAACACGAAAGGTATATGACAAAACAGGAATGGGTTTTCAGCTACT
CCAGAGAAAGATGTTGTTTTGTGGACAGTCGATTTATTAATATTA
Found at i:422372 original size:2 final size:2
Alignment explanation
Indices: 422365--422436 Score: 94
Period size: 2 Copynumber: 37.0 Consensus size: 2
422355 TTTTGATTAT
* * *
422365 TA TA TA TA TC TA GA T- TA TA -A AA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
422405 TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
422437 GGCCAGCTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
1 2 0.03
2 59 0.97
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 421865 -- 422364
TAGGGTCTTTTGAATTGAATCTTAAGTAGTCTTAGTCTATCAGTGGTGCGAAGCGGCTTTGCCCC
TTTTCAGTAGGGGAGCCAAAGGTTAGACTTAGACCTTAGAAAGTCAGCGAACAGCGGTTCTTCTA
TGTAGGTATGGCGTTCCCCCTTGACTTGACTCTCCTAACGTCGAGCTAAGTGACTTCGTAACCTT
TGCGTAGCGTAGTAGAATGAAGGCTACGCACTGACGCTCTCTTATCTATTAGCCTAAGCGTCTTC
GCTAACTCGCTCGCCTACTATACTATACTATACTATACCCTACATATACAATACATTAGTAGGGT
AGGCTTTGCTAACTCAGCCGCTTACTTCTACTAATGTATTGTATAGTAGCGCCTTTTCCTTTTTG
AATAACCCATTCTCATTATCTTTCATAAGTCAAGTAGGCGAACCTATAGGTCCTTAATAGCGTTG
ACAAAGAAGAACAGCCGGTTAAAAGACAGCGAATCTTTTGATTAT
Right flanking sequence: Indices 422437 -- 422936
GGCCAGCTTGACAAGCTACCCTTCCTCTTGATCTGAGGTGCGAAGAGAAACATCTCTTTTTTATG
ACTTCCACTTATCAATCCCGGCCCGGAAAAGTGACCGCCCAGGGCAGAGCCTATTGATGAATGAA
AGAAAGGGTTTATGAGCCCTAGCCCTGTAAGCCCACACCTGTGTAGAGTAGATCGTTCAACACCT
GCGGCACAAACCCATTTTTGACCTATTGGTCCTAGTCTCATAGGCGATCGAACGGCCGCCCCCTA
ATTACTAGACCGACCTGCTGTAATAATTCCATAAACACCTAGCGAAGATATGGCAAACAAATAAA
GTAGCCCTATGTTCGGATCTGACAATACCATACCATAATCAAAAGGTACAACGGCCCGAGCGACC
AGACTTAACATAAATGTAGCCACAGGAGCCATTCTAAAAAGGGAGAAATTAGCACTACTCGGTGA
AATAGGTTCTTTTAGAATCAATTTCGAACCATCTGCTAGAGGTTG
Found at i:461664 original size:2 final size:2
Alignment explanation
Indices: 461657--461693 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
461647 TGCTTGCTTC
*
461657 TA TA TA TA TA TA TA TA TA TA GA -A TA T- TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
461694 TTCCAGTGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 461157 -- 461656
GGTGATCTGGTTGAATTGGGAGAAGCTGTAGGTATTATTTCGGGTCAATCTATTGGGGAACCGGG
TACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTTACAGGGGGCACTGCAGAACAAG
TACGAGCCCCTTCTAATGGAAAAATAAAATTCAATGACTGTCCATTTTGCTGAGGAAGAAAAACC
GAATCCGAATCAACAATTGAGAAAGCTGCAAAAGCAAGGAAAGGAGGTCAGTATGCCCCGTTCCT
TTTCTGTAGTGAATTTCAGTCATTAGGACCCCCTTTACTTGCTCGTGCAAATCCATACTTTGGAC
TCAGATTTTCCTTCTATTCCACTAATAGAAAGAAGAAAAAACCGACCGAGTAGGATCCCTACTTA
AAGTAAAGGAAGTCGTTACGAGAAAAGATCATAAGAGAAGATCCCACAAGCAACGAGCGCCTTAA
GAGAAAGACGTTGCGCTAACGTCAACAAGAAAGTTTGCTTGCTTC
Right flanking sequence: Indices 461694 -- 462193
TTCCAGTGGATCGCAGATCGGAGAAAGTTCACCATTCAAAAAATGAGGATTTGGTCTGTGTTCAG
CTAGTAGGATTTGCTCCCCAGTGATCGAAAGCTTTTAGATCTTTAAGACACTTATTTCATTCGAA
ACTAAAGAATTTCTTTTTATTCAAAATAACTTATGAATGCGAGTCGCGAATTCGCGAGATATCGG
TTTCGAAAAATCAGCGCCCAAAGAGCTTACCACCTTAGGGTCAAGCCGGTCTCCGTCTGGCAGAG
TCGAATCCGATCGATCACTTGAAGTTCGTTAACTAGCCAGAGAGAACCCTCTCTTATTGATTGGC
GAGCTTGAGCTATCAGTCGCAGGTTAAAAAACGAAGTAAGTCCACCGTCGAGTATTCATTCCGAA
ATGGGAACGGCTCGTGTTTGAAAGTCGTCATTTATTCGACTTTTTTAGGGCTGGAATGGAATATT
TGGGTTCGAATCCCATAGCCCCTTTGTGGCGAAGTCTATTTGTTA
Found at i:490488 original size:20 final size:20
Alignment explanation
Indices: 490463--490503 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
490453 CGCGAGATAT
490463 ACGATCAAGAGTCATATAAA
1 ACGATCAAGAGTCATATAAA
490483 ACGATCAAGAGTCATATAAA
1 ACGATCAAGAGTCATATAAA
490503 A
1 A
490504 AATTACGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.20
Consensus pattern (20 bp):
ACGATCAAGAGTCATATAAA
Left flanking sequence: Indices 489963 -- 490462
GTTACCTCATGGGGAGTTAGCCGCACCTACGAATGATATAAATACTACCGTTGCTTTAGCTTTGC
TCACGTCAGTAGCATATTTCTATGCGGGCCTTTCAAAAAAAGGATTAGGTTATTTCAGTAAATAC
ATTCAACCAACTCCAATTCTTTTACCCATTAACATTTTAGAAGATTTCACAAAACCTTTATCACT
TAGTTTTCGACTTTTCGGGAATATATTAGCCGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAG
TACCTTTAGTGGTTCCTATACCTGTTATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTT
ATTTTTGCAACTTTAGCTGCGGCTTATATAGGCGAATCTATGGAGGGCCATCATTGACTCGTTTT
CGAAATAGTCTTTTTTTTTAGTTTAGAACAAGGCAATGTATGCGTAACTCAAGATAATCTACTTA
GGAAACATAAATATACAAACCTAAATAGACAAATACGCGAGATAT
Right flanking sequence: Indices 490504 -- 491003
AATTACGATATTGAGGAATTGTAAAAAAAAAAGGGGGGAGGGGAAAGAGATCTAAAAGATCTTTT
TCCTAAAATTCCTATTTGGCCTTATTATAATTATATCATACCCCCCCCCCGGCAATGAAGATTCT
CTTTCTATTGTTTTGTTCATTTTGGTTCATTCAATTCCAATATCAAATATCTGGAGTCATAATTT
GAATAAAAATTTTTATAGTATTAGTATCACAATTTATGGCGGGTGATTAAAAAAAAGAAAAGAAA
GATCCTTTCTAGAAAGATTCCCATTTCGGTTGATTTTATTCAATTCAACGATTGACCAAAAGAAA
ATATTAAGAAATAAGAAATTGCATGACCTTACCTCAATCAAATACTGATATTTATTTCTATGCAA
TGATTCAACCTAAAAAATTCGTCTATTTCGATTCTAGCCATCTTGAATAATGATAAATAAAAGGA
ATAGAAAAATTTACAAAAAACGAGATTCATGGGCGATTAGGGGAG
Found at i:492131 original size:15 final size:15
Alignment explanation
Indices: 492099--492141 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
492089 TAGATAAATT
*
492099 AATAAAACAAAGACA
1 AATAAAACAAATACA
*
492114 AATAAAACAAATAGA
1 AATAAAACAAATACA
* *
492129 AATTAAATAAATA
1 AATAAAACAAATA
492142 TTAAATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.16
Consensus pattern (15 bp):
AATAAAACAAATACA
Left flanking sequence: Indices 491599 -- 492098
CGAGACAACCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAA
GCTTTAACAATTTATGGACTGGTTGTAGCATTAGCGCTTTTATTTGCGAATCCCTTTGTTTAATC
CTATAAATAGGAAAATTACGTATTTTTTTGTCGTATTTCGAGACTAGTGTTTCTTTTTTTTTTAA
ATTATATCAAGATTTCACTCCTACAATTCCTCATTCGTTGGAACAATAATCCATGGGAAGGACTG
ATTTGAGGATGAGGAATTAGCATAAGCATACCGACTCCCTTTCTTCTTTCCCCGTCCTAGTCTAG
GGGAAACCCCTTTTTTTAAGGAGTGTTACAACAAATGAGGTTTTTCGCAATTGACATGAGACCTG
GTCCCTAATTCTAATAAATATCATTCTTATTGTTATTGGTAATTTCCAATTGAAAAAAAAAAAAA
GATTTCTAAATCGAATTTTTAACTCTATTTCGAAATAGATAAATT
Right flanking sequence: Indices 492142 -- 492641
TTAAATATATAGAATAAGTAGAAAAAAAAGGTGAAGTGATACAAAAAAAAAAGAACTCTGTTCTT
TTTTTTTTAGTCTATCTAAAAGAGGAGATCATATGAAAAATGTAACCGATTCTTTCGTTTCCTTG
GTTCACTGGCCATTCGCCGGGAGTTTCGGGTTTAATACCGATATTTTAGCAACAAATCCAATAAA
TCTAAGTGTAGTGCTTGGTGTATTGATCTTTTTTGGAAAGGGAGTGTGTGTGAGTTGTTTTTTTC
AAGACTAGGCTGGGTCCAACCAGCTGCACTTTTTTTTTTCGTTATAACTAGGATCGAAAAAGGTG
CACGATTCCGCGAATTACTTCTGAATAAATTGAAAATCATATTTAAGAAACATAGCATTTCGTGA
TTCATTGGTAAATCTACTTTGATTCTCTATCAACCAAACCAATAATGCGGTACCATTAACATGGT
TAAAGCTAAACCGTTTGAAGTCCAGACGCAGCATGGTACTCTTTC
Found at i:492764 original size:16 final size:16
Alignment explanation
Indices: 492743--492774 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
492733 TTGAGCCTTT
492743 TATTGGAAAATATTGG
1 TATTGGAAAATATTGG
492759 TATTGGAAAATATTGG
1 TATTGGAAAATATTGG
492775 AAGAATGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (16 bp):
TATTGGAAAATATTGG
Left flanking sequence: Indices 492243 -- 492742
AAAATGTAACCGATTCTTTCGTTTCCTTGGTTCACTGGCCATTCGCCGGGAGTTTCGGGTTTAAT
ACCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTGCTTGGTGTATTGATCTTTTTTGG
AAAGGGAGTGTGTGTGAGTTGTTTTTTTCAAGACTAGGCTGGGTCCAACCAGCTGCACTTTTTTT
TTTCGTTATAACTAGGATCGAAAAAGGTGCACGATTCCGCGAATTACTTCTGAATAAATTGAAAA
TCATATTTAAGAAACATAGCATTTCGTGATTCATTGGTAAATCTACTTTGATTCTCTATCAACCA
AACCAATAATGCGGTACCATTAACATGGTTAAAGCTAAACCGTTTGAAGTCCAGACGCAGCATGG
TACTCTTTCTACTACTATGTTAATATAGAATAGAAATGTTTTCAAAATGAATAATTAGAATTTTT
TTTTCGATATAAAACACTCATGTCGATAAAATGATTTGAGCCTTT
Right flanking sequence: Indices 492775 -- 493274
AAGAATGGGTATTTCAACCAACCCCTTTTTATGCTGAATCGATGACCTATATATAAAGTAAGAAG
AATTCTTTGAATTTGAAGAAAAAAGAAACAACTTTGCTGACAATTATCTATTTTGGTTTGGTCAG
AAGAGTCCTCCGAATATTCTGGTCTTGGATTATTGATCAGTCGCGACATTTTGGAATATGAATAG
AGAAGATAGGAAGAGGATAGGCTCATTACATTAAAAAAAAAAAGATATGGGAATCCCCCCCCATA
GATAAGTAGTTGAAGTAATTGAGTGTGAGAGCCAAATGAATCGAAAAATTCATGTTTGGTTCGGG
AAGGGATTATGGAAGTTTTGAGATGAATGCAAAGATAATCTACTTTCATTAAGTGATTTATTAGA
TAATCGAAAACAGAGGATCTTAAATACTATTCGAAATTCAGAAGAACTGCAGGGGGGGGCCATTG
AACGGCTGGAAAAAGCCCGGGCCCGCTTACAGAAAGTTGAAATGG
Found at i:519453 original size:14 final size:16
Alignment explanation
Indices: 519434--519473 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
519424 CTATTTTGCG
*
519434 GAAAGCCGTG-GTGC-
1 GAAAGCAGTGCGTGCA
519448 GAAAGCAGTGCGTGCA
1 GAAAGCAGTGCGTGCA
519464 GAAAGCAGTG
1 GAAAGCAGTG
519474 ATTCATGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 10 0.43
ACGTcount: A:0.30, C:0.17, G:0.40, T:0.12
Consensus pattern (16 bp):
GAAAGCAGTGCGTGCA
Left flanking sequence: Indices 518934 -- 519433
GATAGAAGAGGAATTCCCACTATAGAATCAAAGAGAAGCGATAGCCGCTCAAACAAAAGAAAGTG
AGAGGTGCGAAGCAGCTCGAGCATAGCGAGAGGAGCGTGAAGGCATCAGAACAGGAGCTACCACC
ACTATGGCTGTCCGTGTCAGAGGCTCGACTGTAAGGAGAGGAGCGAAAAGCCTCGGTAAGGTTAA
CTAGCTACTTTACTCACTGCACTCGAAAAAGATAGCAAACCTACTATAGCGACAATCGGTCGGCT
CCTACGGGTGGAGCCTCCCTCGCCTAGTATAGTTGCGCTTTCTTTTCTTCTTCTTGGTCTAGTCT
ATCTACCCGTCTCTAAGCCCCTCACCTTCCCTTTTTGGAGTACAGGTCAGAGGCTTGTGCGGCTA
GCTACACTAGCCCTGTCGGAAACAAGAAAGAAGAGGCTGATGCACCTGCCCGGCAGTGGGTGGAT
TCAGCTCGATCAACTGGGATAGGAGTTTGTTTTCTCTATTTTGCG
Right flanking sequence: Indices 519474 -- 519973
ATTCATGGGAGGGAGCAGCTTCAATAGCTTTGGCTGTGAAAACTCTTGGTCTTGGAGCATCAGTG
TCATCAGTTCACCCAAGATCGGCAGGACAAATAACTACTAGGTTTGTGCCAGAAAAGCGTCTTGC
GTGACGATCAATGGAAAGAGTTTCAAAAGAAAGAGATTCATCAGCTATGGAATCTGACAGGTATC
GGTATTGAACAGAGGGGGCAGCTCATATAACTGCAGCGGGACCTGCAGAGGGGGCTGTTCACAAA
GCATCCCGTGGTGCGCTCCGATCCGAGGAGAAAAAGTCTCGGGCTTAGAGGTATGGATGGTCCCC
ACTAAGGCTTGCCTACAGCTTTGTTACCAGAGCTGGATCGATTCAATCTTTTCCCAGTGTCCATG
CTCCTACTACTCCTTTTGCTGCTATTCTGACTCCCATGGATGGTTATGGTGGTTCCCCAGCAGCT
GCTCCTACTCCTTTGGCTGGTGCCAAATCAGGTGACTTTGAAGTT
Found at i:525437 original size:32 final size:33
Alignment explanation
Indices: 525401--525471 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
525391 AAGTTATGAA
*
525401 AAGGGATTACTAATGCC-TTTTCAAAAACTTAG
1 AAGGGATTACAAATGCCTTTTTCAAAAACTTAG
525433 AAGGGATTACAAATGCCTTTTTCAAAAACTTAG
1 AAGGGATTACAAATGCCTTTTTCAAAAACTTAG
525466 AAGGGA
1 AAGGGA
525472 ATGCACGCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 16 0.43
33 21 0.57
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (33 bp):
AAGGGATTACAAATGCCTTTTTCAAAAACTTAG
Left flanking sequence: Indices 524901 -- 525400
AGCTCTAACTAGAGAGTATAGTCCACTCCCTTGCCTTTCGGCTGATTCAATCTGAGATGATCATT
TCTTGAATACGAATTCAGCCCTTACGCGCAAAGATCATAACGAATCGAGATTTCAAATTAGCTCC
GGGAGAGCAGTTCACCCCAGAGGAAGAAAAACCGAATCCGAATCAACAATTGAGAAAGCTGCAAA
AGTACACCTAATAACATCATACCCTTTAGAGTAAAAGAATGTCGTTCTCTAGTATACAAACTAGA
GGGATACATCTGAACTAACTTATACTTGGGTAGTGGTACATTAGGAAATCCCAGGATAGAGAGTC
TAATTCACAGGAAAAACTCTATTCAATGCCGTTCTCATGCTGTATGTATTCTTGATTATAGGATC
GAATACCTCTCATAGCATCCGGAAAAGTATAAATTAGAATTCAGATGGTCCAGGGTAGCGACACC
AGTATAATTAGAGATTCTTTTCTTCTAACTTTTTCAAGTTATGAA
Right flanking sequence: Indices 525472 -- 525971
ATGCACGCTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCA
CTTTATCCTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCA
CTTTATTATAGGTGGGCATGTGCAAAACAGCCGCCTTAGGTGCCCTAAAATCAAACAACTTTTCA
AATCAAATAGGTGCACTGATCGCATGGTCCAGTCAGGAGAAGAAAGATCCCGAGAATTTATACCC
ACTGGGGGACTTTCGCCCGAGGATACGGGAACATGAACAAAAAACCCTAGGAGTTGGGAGCAGCC
CTCGCTTCGCTCATGCGTAACCGCGTGGTTAAGTACTCTATTCTATATTGCCTTACTAAACCTTA
CTAAACATAAAATAAACAGCAGGATCTGCATCAACGGTAATTGGTCGCTATGTTCTGTCCTATCA
GCTTGCTTCTGGCGAGATGAATAGCTTCCTTCTTCCATTCCGACC
Found at i:525560 original size:65 final size:65
Alignment explanation
Indices: 525479--525607 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
525469 GGAATGCACG
525479 CTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCACTTTATC
1 CTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCACTTTATC
525544 CTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCACTTTAT
1 CTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCACTTTAT
525608 TATAGGTGGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (65 bp):
CTCACAACTGGAAAAGCCCACTTTGACTCTCAAAAAAGAAAACAAAAAAAATGACTCACTTTATC
Left flanking sequence: Indices 524979 -- 525478
TTCAGCCCTTACGCGCAAAGATCATAACGAATCGAGATTTCAAATTAGCTCCGGGAGAGCAGTTC
ACCCCAGAGGAAGAAAAACCGAATCCGAATCAACAATTGAGAAAGCTGCAAAAGTACACCTAATA
ACATCATACCCTTTAGAGTAAAAGAATGTCGTTCTCTAGTATACAAACTAGAGGGATACATCTGA
ACTAACTTATACTTGGGTAGTGGTACATTAGGAAATCCCAGGATAGAGAGTCTAATTCACAGGAA
AAACTCTATTCAATGCCGTTCTCATGCTGTATGTATTCTTGATTATAGGATCGAATACCTCTCAT
AGCATCCGGAAAAGTATAAATTAGAATTCAGATGGTCCAGGGTAGCGACACCAGTATAATTAGAG
ATTCTTTTCTTCTAACTTTTTCAAGTTATGAAAAGGGATTACTAATGCCTTTTCAAAAACTTAGA
AGGGATTACAAATGCCTTTTTCAAAAACTTAGAAGGGAATGCACG
Right flanking sequence: Indices 525608 -- 526107
TATAGGTGGGCATGTGCAAAACAGCCGCCTTAGGTGCCCTAAAATCAAACAACTTTTCAAATCAA
ATAGGTGCACTGATCGCATGGTCCAGTCAGGAGAAGAAAGATCCCGAGAATTTATACCCACTGGG
GGACTTTCGCCCGAGGATACGGGAACATGAACAAAAAACCCTAGGAGTTGGGAGCAGCCCTCGCT
TCGCTCATGCGTAACCGCGTGGTTAAGTACTCTATTCTATATTGCCTTACTAAACCTTACTAAAC
ATAAAATAAACAGCAGGATCTGCATCAACGGTAATTGGTCGCTATGTTCTGTCCTATCAGCTTGC
TTCTGGCGAGATGAATAGCTTCCTTCTTCCATTCCGACCTTCGATACGAGGATTCATCCGAAATC
GATTGGTTAACGCGAAAGCTGGAATTACTTCGGCCGTGGCACGATCATAAGAGCAAACCCTCAAT
TCAATTTTCCACAAAAGAATGCAATAATAAAGGAGATGAGCTTGC
Found at i:528851 original size:24 final size:24
Alignment explanation
Indices: 528824--528871 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
528814 TATTAAAATA
528824 ATAATAAAAACAACGAAATTCTTT
1 ATAATAAAAACAACGAAATTCTTT
528848 ATAATAAAAACAACGAAATTCTTT
1 ATAATAAAAACAACGAAATTCTTT
528872 TTAAATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29
Consensus pattern (24 bp):
ATAATAAAAACAACGAAATTCTTT
Left flanking sequence: Indices 528324 -- 528823
GTGTCTAGGAATCTCAATGACCAATAATTGATAATTAACACGGTAAGGAACTAGAGAATATCTGG
AATAGCACAGAAAGATTTCTTTTTATGAATTATTCATTCAATGAATTTCAAATAAGTCCTATCTT
ACTCAGACCAATAAATAGAGCCGAAGTTATCGTTAAAGCCGCTAGTAGAAAACCAAAATAACTAG
TTATAGTAGGCATGAAGGAGCTAAAGGAAATATGTTCTTTTTATACATATGTTTATAAAGCACTT
CCCTAAGTTTCAACTTTTGAAAGATACGAGGATAAGCAAAAATACCATACGAATTGAAACAATAA
GTTCAATTGAAAGTTTTTGATTCATCAATCTTTATAGAAGGTCCTAACAAAAATAGAGTGACAGG
GGTAGAAAAAGAAATCAATTCATAATCTTTGACATTTGACATCGACCCATCCCACGATTCAGAAT
CAACGGATTCTTTGGGCAACTCTTGAGTAAACTAATATTAAAATA
Right flanking sequence: Indices 528872 -- 529371
TTAAATCAATATGGAACAAAATTGGGGAATCGCTTCGATTTTGTATTTTTATTTTTTCTTTTTTA
TTGTATCTAATACATTTTCTAGTTTCGAATAAAGAGTGACCTTATACCTTATAATACCTTTTTCT
TTACTTTTTGACTTTATTTTATTTACTTTAATTTTTTTTAACTCAGTAGATTCAGCAATAGGTTC
ATAGTACTGACTATGCATAGGACAACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTAT
TGATTTTAGGAGGACTATAATGATGAGAACGACAAGGACAGGACTATAATGTGAGGAGGACAGAA
CAGACCACTCACGATCTACTAAAGGGCAAGTAGCTTGATATTGGTTCAAATCCAATTCGTGAGAA
GAAGCGTCAAATGATTTGGACTGTTGTCGCTTGCTTGCCTTGCCCTAAAGACTGGAAAGAGAAGT
CAACAGTGCCTAGACCTCAATCAATACGCTTACTGAGAGTACCGG
Found at i:530042 original size:21 final size:21
Alignment explanation
Indices: 530018--530069 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
530008 GTCTTTCTAG
530018 TAGGTTTCTCCTCGTCTGTAT
1 TAGGTTTCTCCTCGTCTGTAT
* * *
530039 TAGGTATCTTCTCGTCTGTCT
1 TAGGTTTCTCCTCGTCTGTAT
*
530060 TAGTTTTCTC
1 TAGGTTTCTC
530070 GTCTAATGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.23, G:0.17, T:0.50
Consensus pattern (21 bp):
TAGGTTTCTCCTCGTCTGTAT
Left flanking sequence: Indices 529518 -- 530017
GTCTAGATCTGCTGCTCCTGGGTCTACCGGGTATGGAACTACTCGTGCTCGCTTTTTGATTCTAG
AGATGGAAGGAAGATCACTAGGTATGCTGCTTATTTAGATGCTTATACTGGATCTGGGACTCTTA
CTGATAGCTTAGGTCGGTATGTACCGAAAGTCGGAACAAGAGGGATGTGTAAAAGTCGAACAAGC
ATCAACAGCAGCATCTGTCTCTGTCTCTGCTTTTGCTGTTACTGGGTTTCTATATGATGGATTTC
CTGTATTCCTGTATATGGATCTTGATATGGAACCAATGAAGCTGTTAGGGATGCTATCCTTGCTT
GGGATTCGGATAAGCAAAGGAGAGAACGAATTAGAGCCTCACATTGCTTCCCTCTTCCTCTGTCT
TACAGCGATAGTTATCTGTCATTTTCTTTTGGGTGGATCATCTAGGTTTTTGATGCGCTTCTTCA
TTTGTTCTGCATAGTTATCCATTAAAGAAGGCCGTGTCTTTCTAG
Right flanking sequence: Indices 530070 -- 530569
GTCTAATGTAGGGTGAGTCTCCTCTCTTGGTTCTTCTTCTTCTTTATCTAATAGTGTTCTGTCTT
CTGTAAGACTAGTCTCTATCTCTGTAGTGGATTGAGTGTACATCTTTTTATCAGTATTCTTTTTT
GCATCATACAGTGATTTCATCTCTTTGTATCTCTCGGCTATCTCTCTTTCCTTCTGAGATAATTT
CTCACTGAGAATTTGATTTTCAGTCTGTAGTTGTATTAAATTATTCCTTAGTGATTTGATTATTA
GTTTTCCAATGTGATCTAGGCCAGACAAGTCTTTGATATCAATTGGATCAGTATCCTTCCAGACA
TCTCCGTGATATACTGGTATCCTTTTGGCCCCCAGCTTAATCCCAAGCCTGACAAATGTGTCCTT
CTTGATGATGTTAAGAGTGTGCCAATCAATCCGGAAGTTGCTTACCACCTGTACCTGTTCTGTAC
GAGATGGGTTCTCGAACTGTAACTTAAACCATTCAGGTTGGACCA
Found at i:532837 original size:15 final size:15
Alignment explanation
Indices: 532819--532854 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
532809 TGCCTTTCTA
532819 TTTAATGCCTTCATC
1 TTTAATGCCTTCATC
*
532834 TTTAATGCTTTCATC
1 TTTAATGCCTTCATC
532849 TTTAAT
1 TTTAAT
532855 TGTGTACGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTAATGCCTTCATC
Left flanking sequence: Indices 532319 -- 532818
CTTGAATGATAGAAGATAACTTATTATCTCTCTCCTTTTCAGATAGGGATGGCCTATCCATCTTT
TTGCCGTCCATATATACTCTGATCATGAGTCGAACTATATAATTTCCGTCGTAGATTTCATCATA
TTTCATAATATTTCGATATATATGAGCATAGATTTCACTCATTGGAATTAACTTACAATCTTGAT
AAGTCAAGGGGATAGCTGGACCAAGCGTAAATGAGATCTCCTCTCCGTAAGATCGCATCATGGTA
AAGGAAATTGTGAACTTACCGTAACCAGATAAGGATGGGTAAGCAAACTGGATTAAGAGATCCAT
GGTCGCAAGACAGAATAGGCTAATATCGTTAACAAGAGGATAAGGCTCAAAGAAGTAATGTGATG
CAATGATTAACCCTGGATGTGGATCTTGCTGTGTTGTTCGTTCAATCTTTTGATACAAGTGATTC
AATAACAGCCCAGTAGTTGCGCTGTCTGTGGTGTATGCCTTTCTA
Right flanking sequence: Indices 532855 -- 533354
TGTGTACGCAGTAATATGGTAAGTTCTCCCCATTTTTTAGCTTGAACTTGAATTTCTCCCACTTT
AGCATATGAGCATCCCAACTATCCTCAGGGGATTTCAAATTACCGCATACATTACGAGTATAGTT
CTCGTAAGAATCCAGTATTCTCGAGTTCTTTTTTTCCCAAGTAGTCCTCATATTCTTGATTATGT
TATCAGGTATATTTGCATTTAAGTAATAAAGAAGCCTATCTTTTGATATTACCTTACTGGTAAAG
TAATTCTCAGTAAGTTTTCCATGTGACTCCTTTTTTAGAATTGGTTTAATAACATTCATATAGAT
GAAGTTGTTGATGATTGAAAGGGGAGGGCCCATCTTACGAAAGGCATAGCTATAAAAACTTGTTA
TATTATCGCAATATTGAACAGTTGTTAGAAAGTTGTCGTGTACTGTGTATATAGGCGCATTTCTA
TTAAACATATCTTCTACTACACTCATTGCAATACAGGCATCCCTC
Found at i:539383 original size:2 final size:2
Alignment explanation
Indices: 539376--539416 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
539366 TCTTTTGATT
*
539376 TA TA TA TA TA TA TA TA TA TA CA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
539417 CAATACAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 538876 -- 539375
TTATCGAATTAAGAGTAAGATATTTATTATTGATAAATATAGAATTGATAAATCGAAATTCTATA
GATCGCTATATTCTATTAATTTTTATATTAATCGTTATGTTCTATAATATTCAATATTTATTTGA
AATTCTATTCGTTTCTTTATGAATAGCTAAGAATGAATAGTTAATAGATAAGATTTTAGTAATTT
ACTGAATTACTATGCATGTACAATTTCTCTTATTTAAGCCCGCTTAGCTCAGAGGTTAGAGCATC
GCATTTGTAATGCGATGGTCATCGGTTCGATTCCGATAGCCGGCTTTTCTCTATTTGTTTGATTT
TTTACATGATTGATAATGTCTTTTTGAAACAAAAGAACAGAACATTGAAAGACCTTCTTCCTCTT
TTTATAAAGGTCATCGATCTATTATGTTGTAGGAGCTTCCAATTATGAATCAAAATTGGAGGAGT
TAGATCTCGGCAGAATAAATCAAGGAAAAGAACCTTCTTTTGATT
Right flanking sequence: Indices 539417 -- 539916
CAATACAAAAAAAGGTCTGGATCTTGATCCAAATCATCTCATTATTCTTTGTAGTACAAGAACTC
AGGGGATTTCGCTTCATTTATCATTTAGCTCAGTTTTAATTTAGGTTTATGAAATTTCAATAAAA
TAAGGAGTCTTTATGTCACGTTACCGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTT
ACCGGGACTAACGAGTAAAAGGCCTAGAGCCGGAAGCGATCTTAGAAACCAATCGCGCTCCGGGA
AAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACA
GAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGGTCAACGGGTCTGGTTTT
ACTACAATTACTTGAAATGCGTTTGGATAACGTCCTTTTTCGATTGGGTATGGCTTCAACTATTC
CTCAAGCCCGCCAATTAGTTAACCATAGACATATTTTAGTTAATG
Found at i:539403 original size:21 final size:21
Alignment explanation
Indices: 539377--539421 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
539367 CTTTTGATTT
539377 ATATATATATATATATATACA
1 ATATATATATATATATATACA
539398 ATATATATATATATATATACA
1 ATATATATATATATATATACA
539419 ATA
1 ATA
539422 CAAAAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (21 bp):
ATATATATATATATATATACA
Left flanking sequence: Indices 538877 -- 539376
TATCGAATTAAGAGTAAGATATTTATTATTGATAAATATAGAATTGATAAATCGAAATTCTATAG
ATCGCTATATTCTATTAATTTTTATATTAATCGTTATGTTCTATAATATTCAATATTTATTTGAA
ATTCTATTCGTTTCTTTATGAATAGCTAAGAATGAATAGTTAATAGATAAGATTTTAGTAATTTA
CTGAATTACTATGCATGTACAATTTCTCTTATTTAAGCCCGCTTAGCTCAGAGGTTAGAGCATCG
CATTTGTAATGCGATGGTCATCGGTTCGATTCCGATAGCCGGCTTTTCTCTATTTGTTTGATTTT
TTACATGATTGATAATGTCTTTTTGAAACAAAAGAACAGAACATTGAAAGACCTTCTTCCTCTTT
TTATAAAGGTCATCGATCTATTATGTTGTAGGAGCTTCCAATTATGAATCAAAATTGGAGGAGTT
AGATCTCGGCAGAATAAATCAAGGAAAAGAACCTTCTTTTGATTT
Right flanking sequence: Indices 539422 -- 539921
CAAAAAAAGGTCTGGATCTTGATCCAAATCATCTCATTATTCTTTGTAGTACAAGAACTCAGGGG
ATTTCGCTTCATTTATCATTTAGCTCAGTTTTAATTTAGGTTTATGAAATTTCAATAAAATAAGG
AGTCTTTATGTCACGTTACCGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGG
GACTAACGAGTAAAAGGCCTAGAGCCGGAAGCGATCTTAGAAACCAATCGCGCTCCGGGAAAAAA
TCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACG
ACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGGTCAACGGGTCTGGTTTTACTAC
AATTACTTGAAATGCGTTTGGATAACGTCCTTTTTCGATTGGGTATGGCTTCAACTATTCCTCAA
GCCCGCCAATTAGTTAACCATAGACATATTTTAGTTAATGGTCGT
Found at i:542576 original size:51 final size:51
Alignment explanation
Indices: 542500--542601 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
542490 TATTCGTTCG
542500 CCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCT
1 CCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCT
542551 CCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCT
1 CCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCT
542602 TTCGAGGAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (51 bp):
CCGGAACCAGAAGTAAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCT
Left flanking sequence: Indices 542000 -- 542499
TGTATTTTGATTCTATTAAAACTAATAAAAGAGACCCACGAATGACGCAAATATAGATATAGATA
CTGGAATGTCTCTTATCTTAGTAATGACTGCTCACGTGATTTGGAATAAATTACCATGTTCTATC
TAAGACATAAAGTAGCTACGTTTAGGGACTTCTAATTGAGATATGAATACGCTGGGTTGTACAAA
AAAATGGTTTTTGGCAAATTTAAAGCCTGGAAAAGGTTTTATAAGATTAAAACAGAGTCAAAAGG
TCCGTTGAGCACCTTATGGATATGTCATAATAGATCCGAACACTTGCCCTGGATCGACTTCCAGA
TCATAATTGCTCTAGTGAATAACTCAAGAAAATAAATAGATGGGAGATAGAAGTATAAAAGAAAT
AAACTAATTAGAAGCATCTCTCATAGGTTCACTAATCACTTGACTGACTGTTGGCGGGTTTCTTT
GTATGTGTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCG
Right flanking sequence: Indices 542602 -- 543101
TTCGAGGAATGGGCCAGACCGGGTCATTTCTCAAGAACAATAGCTAAGGGACCTGATACTACCAC
TTGGATCTGGAACCTACATGCTGATGCTCACGACTTCGATAGCCATACCAGTGATTTGGAGGAGA
TCTCTCGAAAAGTATTTAGTGCCCATTTCGGACAACTCTCCATCATTTTTCTTTGGCTGAGTGGC
ATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCCTGGCTAAGCGATCCTACTCACATTGG
ACCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGTCAAGAAATATTGAACGGTGATGTGGGCGGGG
GTTTCCGAGGAATACAAATAACCTCTGGTTTTTTTCAGATTTGGCGAGCATCTGGAATAACTAGT
GAATTACAACTTTATTGTACCGCAATTGGCGCATTGATCTTTGCAGCCTTAATGCTTTTTGCTGG
TTGGTTCCATTATCACAAAGCTGCTCCAAAATTGGCTTGGTTTCA
Found at i:544385 original size:13 final size:13
Alignment explanation
Indices: 544367--544391 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
544357 ATGATCGTAT
544367 AGTGGTTCTATCG
1 AGTGGTTCTATCG
544380 AGTGGTTCTATC
1 AGTGGTTCTATC
544392 TTTCAACCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.28, T:0.40
Consensus pattern (13 bp):
AGTGGTTCTATCG
Left flanking sequence: Indices 543867 -- 544366
TCTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGCGCTTTAGGGCGTCCAC
AAGATATGTTTTCAGATACCGCTATACAATTACAACCTGTCTTTGCTCAATGGATACAAAACACC
CACGCTTTAGCACCTGGTGGAACGGCCCCTGGTGCAACAGCAAGCACCAGTTTGACTTGGGGAGG
TGGTGATTTAGTGGCAGTGGGTGGCAAAGTTGCTTTGTTACCTATTCCATTAGGAACCGCAGAAA
TAAAATTGGTTTTAATTGGTTTGGTGGTGGAATTTGATGCAATCACCCTGAAGAGAGTATCTGGC
CTAACTCTGGATAAATATTATCCAGACATTTCAACGAAAAAAATGCGGATATAGTCGAATGGTAA
AATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTCCCGCTATCCGCCCAGGGTAAAGTAATG
TATTTAATAGGATAAAAGATTAATTATAGTTGACCATGATCGTAT
Right flanking sequence: Indices 544392 -- 544891
TTTCAACCCCAACAGAAAAAGAAAAGTGTTAATTAATTACTAGTTAACAGAATCAAACCTAATTT
TTTTGTCAAAACATAAAAAAATGTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAG
CCTTGCGAGCTACCAAACTGCTCTACCCCGCGATGAAGAAAAGAACTGGGAACTAATGAACAAAC
AAGGATTGAATAGGCCCCTCTTCCATATCTGTACAAATAGAATAGCCTATTTATACAGAATGGTA
AAGGGGCCCCTCTATGATCATAGAATAGAAATAAATAGAAAAACGAAGGGATATTTTAATCCTTA
CCAACTTGATCTTGTTGCCCCCGGCAACAAACATGCATGAAACGTTTCGCGAAGTATGTGTCCGG
ATAGTCCAAAGTCTCGATAGTTAGCTCTCGGTTTTCCGGTCGAAAAACAACGTCGATGAAGACGT
GTAGGTGCACTATTACGCGGTGGGGATTGTAACTTTCCATGAATT
Found at i:592198 original size:31 final size:31
Alignment explanation
Indices: 592157--592236 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
592147 TAGAGGAGAG
* *
592157 AGGCTCGATGCAATTGAGTTGATTGTAAACA
1 AGGCTCGATGCAATTGAGTTGACTGCAAACA
* * *
592188 AGGCTTGATGCAATCGAGTTGACTGCAGACA
1 AGGCTCGATGCAATTGAGTTGACTGCAAACA
592219 AGGCTCGATGCAATTGAG
1 AGGCTCGATGCAATTGAG
592237 AAGAAGCGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (31 bp):
AGGCTCGATGCAATTGAGTTGACTGCAAACA
Left flanking sequence: Indices 591657 -- 592156
CCGAGACTCTCCTAGTGTACCGGGGGTGGAGGTATCCATAATTGCGTAGATAAGGAAAGTCGAAT
TTTCACCTATCCTGATCGCCTACCTACTAAGTGCTGCTATTCACTATCACTTCATTCTTCCTATT
AAACTGAACGATCATTTATGGCATTGATCAAGCACACAGGAACGTCTCTCGAAGCAAAGTTTGGC
CATATTTCAGTTATGCTGACTCCTAGCTAGCTCTCCTTACTCCCAGTTAGACGGTTATAGTAGGA
GGTGCAACTAGAGTTGTTGGGTGCTTCGATCGGTGATCAGGAGGTGGAACCTGGGTTATTGGTGT
AATGAACCATGTCAGGATTGCGATAGTTAGACCTTCCTTTTTGGTTTGTACCGACCAGTGAGCCG
TAATGAATGCAAATAGGAATCCTCCTCAAATCGGAATGTTTAGGATAAGGTTCGTTCAGTATGCA
AAGGTGCGATCTCGGGAGAGTACGGTCAAGAAGAATAGAGGAGAG
Right flanking sequence: Indices 592237 -- 592736
AAGAAGCGACTAACCAGATAAGCGGTCAAAGCTTTTGAATTGCGGTAGTACAGGGATCGGGGACC
TTTTCAGAAGGTGTACGCTCAGTAAAGGTCCCGGGCGATTCATGCGCTTGCGAAGATCAGATTCA
TGCTCAGGTAGCAGAGCGCTTTAATAAAAAGGAAGGTGACGCCTTTGACCCCCTGGGCCTGTCTG
ACTCCCTAGGCTTGCCTGAACGTAGGACCCGAGCGGCGACTTTAGCGCTTTTGATCGGAGCTTTC
ATTGTTCTTGGAATGGTAGTCGAAAGTGGTTACGACATGGCCTTCAAAGAGTTGTCCCCTTCTGA
AGGGATGTAGCTGTATTCAACCGTAGGCATCTTTTCTTGAGTACGATTTCAAAAGATTCCACATT
CAAGAGGACCGGAGAATCCCCCTATTGAATAATGGGAAGCGAGCTAATCCCCGAAAATGCTCGTT
CCTTTGTCGTTCAAGAATCTTGTGAAAAATTCCTTCGGTCGAGCG
Found at i:605868 original size:38 final size:37
Alignment explanation
Indices: 605817--605888 Score: 126
Period size: 38 Copynumber: 1.9 Consensus size: 37
605807 TAAGAATGCT
*
605817 GGTTTTAAGAATGAGTGATTGCTCCTTCTCCGACCGCC
1 GGTTTTAAGAATGAGTAATTGC-CCTTCTCCGACCGCC
605855 GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACC
1 GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACC
605889 CTTACTGCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 12 0.36
38 21 0.64
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (37 bp):
GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACCGCC
Left flanking sequence: Indices 605317 -- 605816
CCTAGGTATCCACCGTAAGCCTTTCCTTGTTTGAACCTCGCCCTTAACTTTACTTTAAGGCTATG
CCATCCTAAGGTGCTGCTAAATGGAAGGATCTTATCAACGTCCATGAATGATAAACCATAGATCG
AACTGCCGAATCGGAAAAATTGGGTGCTATCATATTCATATAGCTTTGTATCGGCTAAGTTCACG
AGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCC
CCCACTGATTCTACCATAGAGGCCAACGATAGACAATAACTCCCCCCCGAACACAGCTTACAACT
TTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGTGCTGAGTTGGAAT
CCCATTCTAAGTAAGGATTCTTGTGGTTCCGGAGGATCCAGCTACAGGAGAACCGGGAACGGAGA
GCTTTCCCCCCTTTTCCGCCCCGACTCTTTGGTCTTAAGAATGCT
Right flanking sequence: Indices 605889 -- 606388
CTTACTGCCCAACCTGAGAGTGGACAGCTAATGCATTCCACTTATTGAGCAGGGTTCTATGGTCG
GTCCGCGACCCCTGGATACCGAAGGCGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGAC
GATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGTCGCATTTCGCTCAAAGGGTTGAAGGGAGAT
AGTGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAAC
CCTAAGAGAGCCGCCGACTCCAACTACCGTCCATGTACGATCCATACTAGATCTGACCAACCGCC
CATCCTACCTCTTCTACGTTCTTGACAGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGT
TTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATT
ACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCA
Found at i:649018 original size:16 final size:16
Alignment explanation
Indices: 648997--649029 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
648987 CGAATTACGG
648997 CAAAATAGAAGATCTA
1 CAAAATAGAAGATCTA
649013 CAAAATAGAAGATCTA
1 CAAAATAGAAGATCTA
649029 C
1 C
649030 GTGACCCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.18
Consensus pattern (16 bp):
CAAAATAGAAGATCTA
Left flanking sequence: Indices 648497 -- 648996
TATCCTGCACCTCGCGTTCATGATATCTACATTCAACTGTGCCCCGGAGACACGGTCGAAGCACG
CCCGCCCAGTGTGCTTCTTTCACGACATGCTCTGGTCCCGGGTCTTTCCCAGTGGTCTTCTAGCG
TTAGAAGAAGTCGTGTCCGTCCCGGACATCCGCAACGTCCTACCACGCTTTTTTTTTTTTTTTAT
AGGACAAACTGAAGAAAAAGACTGACCCATTCTCTTTCGGTGACTTTCGCGGTCGCCCTCACTGA
ACCGACTTGAATCTGAACTACGATTCAGATCAAGTCTTACCGAAATCGGATTTCCTTTTCTTGCC
ATATGCGCTTAGACTTTCCTTTCCTTTTTCCCCCTTTTTCTTCCCGGTCCAATATTTGTTCTCGA
AAGTCTTCGTTTCCGTGTAGAACTCCAAATTGTTGACCAACCTTTCCTTCAATGATCTTACAACG
AGTTTTGAAAAAGTCAATTCGTACGGAGCAATTAACGAATTACGG
Right flanking sequence: Indices 649030 -- 649529
GTGACCCAATTTTCCTGTTCAAAAAAAAGAAGATACTCACTTTCAGTTTAAGACCATTGTTAAGG
GTCCCACTACCCAATTGAATGCAAAATTTCATTCATTTTGGGAAGTATGCATGGATCTGGCTGAA
CGGTACATTCCGTGGGTCTTTGATATTCCCATGGAATGTGGTCTACGCTGGCTCCCTCAGTGGTC
GTCATCATCGGTTAGTACCCAAGGGAACAGATTCATTTCGACTCCCAAGGGGAACACCCCTTTCC
ACAGAATGATCTGGGATATATTCTCAGTCGCTATGTGGGATCGGATGACACTGCAGGCACCAACG
TCGGGATAAAACCCAAAGAGCTGCCGGGAACCTTTGGCCGTTCCAACCAGGTGTTTTCTAGATTG
GGCAGTGGGGTATATTACCCCACTGTTCTCTTTCTTCGCACCAGATCGGGTGGTCCTGTCCTCCC
GGAGGGATGACCCTGACGATGTGAACTTTCCATGGTCTATGTACT
Found at i:665185 original size:14 final size:14
Alignment explanation
Indices: 665166--665196 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
665156 AATAGTTCCC
*
665166 CTTCCTTAATTGGT
1 CTTCCTTAATCGGT
665180 CTTCCTTAATCGGT
1 CTTCCTTAATCGGT
665194 CTT
1 CTT
665197 ATGGGTCAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (14 bp):
CTTCCTTAATCGGT
Left flanking sequence: Indices 664666 -- 665165
CAATGCTGATTTACGTCACCGCAATCGACTCAGACCAAACGCTCAGCCCTTCATGCTTAATTTCA
GTCAAAGGAGATGCGCCATTCCCATTCCAGGAAGTAATGAAAGAGAGTGAATCCATCATCGAAAG
TGTGTACGAAGATTAAGTAAGGGCTTGATCAAAGGCAACTTGCGGGACTCTCCTTCAGAACGAGA
CTTCCCTCTGGCGTACTTATCATCGAAAGTGTGTATGAAGACGAAAGGGTCGGATAAAGACAGTC
TGCGGCTGTATATTCAATCTCCACGGAGGAAGGATCATCATGCGATGAGTAAACCGCGACAGAAT
ACCCCCCAGAGGAAAGACCAAGACAGGAGCTACAGTCTGCGCCGCCCCAGTTCGAAGAGGGTGGA
CAAGCAACTGTCAACGACCTGATAGAAGTCAACTTGGGAACAAAAGAGGACCCAAGACCATCATT
CATCAGCGCCATGCTCAACAAAGAGGAAACCGCACAATAGTTCCC
Right flanking sequence: Indices 665197 -- 665696
ATGGGTCAGAGTACTTGAGCCTTGAAAAAGGATCTCAAATAGGCTGCCTTTATTTTGTAGTAAGC
CTATTAGTAGCTCGTACCGCTCCTCTAGTTCAAGTAGTTTAAGAGTTAAGCTAGCTTAGTGAATC
GATTTCAGTATTAAAGTCTTCCCCTTGCTTCTTTGAAAGTGTTTGAGTGAAGGCAGCATAAGTGC
ATTGGTCACATAGGCTTGAAAATACCCGCTCGTGTCCTATTCAGTCAATTCCTTGTTTAGTCTTT
TTGTAAAAAAAAGTCTCGCTGATTGGCCCTGCTAGTGTGCGAATCCCGTAGCCTCTTCTGTCCAT
TCCGAGAGAGTCTTATGTAGCCTGGCTTCTTTGATCGGTGGAATCTGCCCCCCAGCCCTTCCCTC
TTCTGCTAGCCTTTCCCGGTCAACTGCGGAAAACCTTCTCAATTCAATTGCCGATTTTTGAGCCT
ATCTCGCTAGTTCAAGCCCTCTTATGGTCTTTGTACTAGTTCTGC
Found at i:667426 original size:12 final size:12
Alignment explanation
Indices: 667407--667439 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
667397 ATCAGGACCC
667407 TCATAAGCAACT
1 TCATAAGCAACT
667419 GT-ATAAGCAACT
1 -TCATAAGCAACT
667431 TCATAAGCA
1 TCATAAGCA
667440 CCCGAAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.24
Consensus pattern (12 bp):
TCATAAGCAACT
Left flanking sequence: Indices 666907 -- 667406
TGCGCCGATTGTACGTCGAGGCCTTTGCTGCTGATGGGTATCGAACTGCTTTGCTTAATCGACAG
AATATACGAATATAAGAGAACGAGATACTTAGTCTGCTCCTACGTATGGATATGGATATGGATCC
GCGTATGGATCTCGAACACGAAGATCTTAATCTGGATCTCTATCTCTAGTTGTAAGGGATGCCGG
GGCAAGTCGCAGGTTCTGATGCTGGGCATGGGTATGGGTATCGATCACGATCGGGAGATGGAACT
GCTGCTCTAGGTACCCTTGCTTCTACTCCAACGGGATCAATGACTGGACTTGGATCTACTAGTGA
AGCTACTCGGTCTCGATCTGGGTCTTCACCTGGAACAACTGGAACTGATACTGGGCATGGAACCC
GGTCTTGATCTGGAGATGAAACCTGTGAAGCTGCTAGGGGTGCTACCTTGACCTCTGCTCTTAGT
GATGGTGGTGGATATAGTGGTGGGTCTGGGTAACGATCAGGACCC
Right flanking sequence: Indices 667440 -- 667939
CCCGAAACCGTCCCTAACCCGAGCTCCCAAGCCGAGCTTTCGGTTGATGAACTGGAACTGGCCTT
AGCCTTCGACTCTCGAAAACCTGAACCGCTGACTGTGCTTTGTAGTCGTAATCTTGGCTTTAGCT
CGTCTTTCCTTGATTTGTAAGTCACTCTGGTTGGTTAGCCTGTCCGCCGTACCTTTATGTGCTTT
TCTCTTTCTATAAGATAAGATATATCGAGTAGGAGCTCTTGCTTGAGCCTAAATTGACATTGACC
TTGCTTGTGTCCGGGCGAACTGGAGTTGGTAGCTCCTCAAGTCAAGTCTAAAGTTAAGATAGCAT
GAACAGCAGCCGCCATAAGAGGCACACGCGCACAAGCAGAGGAGTATTGCCGAGGGATCGGATTA
AAGAGTCTGTTTCGAATAACTAGGTGCACCGTGGAAAGCCCGCGGTAAAGCCATCTTGAATAAGA
AAGCGCCATCAAAGGAAGCGAAGCGGCTAAGAGTCACGAATAAAC
Found at i:686718 original size:2 final size:2
Alignment explanation
Indices: 686711--686737 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
686701 GATCTATCCA
686711 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
686738 CCAAAAGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 686211 -- 686710
GGAATAAGACCCAGAGGGTAACTTGTCAAAGACATACGCTCAACTCAACCAGAAAGAGAAAGATA
CTGCGTTCTTCGGCAGATAAATAGGTAGAACACATCCTCGTTGATATTAGTGCTCGAAGCTGGGG
CACTCCGAGGCCATTCCACGTGGTAATCCCGTATATCCCTCCATTTAGGTACATTACATTCACGA
AACTCCTATAACAACATAGATCTCTCAAAAGAAAAACTACAGGCATTATTGCCCTTACGCTCCTT
CCTCTGGCAAGAACTCACAGCAGACAGCAGCAATCCATATATAGGAAGAACGCTTAACCTCTGGA
AAGTCGCCTTATCTTCCTTTGCTTTGGGTCTCACTCCTCAATCTCATACTAGCTAGTGAAAACAA
TCAGTCTAGAGATCATATTCAAATAATAGTCAACGAAGGAGACCAAGTGCTAAGCTACTCACCGA
GCGGGAAGAGCTATTGGCTATCGTTCCGAGCAGTCGATCTATCCA
Right flanking sequence: Indices 686738 -- 687237
CCAAAAGGCATCCGCGAATGACAACTAGCGCACAGAAAAGAAGAACGTGTCGATTTGACATTTCG
TCTATCTCCTCGCCTAACATCAATCAATTCCGTCCCGAGCAGCAACACTTTACTATACATCATTT
CATCGATCATACTCAAGTAGACGAGATCCAATTAGACCATCTTACCTTTCCTGCCTATCAGACGA
GGAGTGAAGCGAGCTAGACCCACTATACTACCGAACCCGAACCCCAGTGATACAATAGATGACTG
ATGATAACCGAAAACAAGAGAAAGGGGAGTGTAGGGCCAATCTGAGTAATGAAAAGGTAGTGAAA
GGGTAGGCGGAATCACCGTTCTTTATGAGGGAAGTGGGGAATGTGCTGTATGAGGTGGGGAATAG
GTTGCAGAAGGTAGACAAAGAGGGTCCGGGCAGGAAGAATCTCATGGAAGAGTAGAGTGGAAGCA
CGAAATCGGCACAACATCTATTGTACAGACGCTATTGAAACAGCG
Found at i:688732 original size:29 final size:29
Alignment explanation
Indices: 688694--688767 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
688684 TGTCGTCCTC
688694 CTCA-CATTATAGTCCTGTCCTTGTCGTT
1 CTCATCATTATAGTCCTGTCCTTGTCGTT
688722 CTCATCATTATAGTCCTGTCCTTGTCGTT
1 CTCATCATTATAGTCCTGTCCTTGTCGTT
688751 CTCATCATTATAGTCCT
1 CTCATCATTATAGTCCT
688768 CCTAAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 4 0.09
29 41 0.91
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.43
Consensus pattern (29 bp):
CTCATCATTATAGTCCTGTCCTTGTCGTT
Left flanking sequence: Indices 688194 -- 688693
CCTATCCGTCATTGGACACCCAAGACGAAGGGGAACAGGGTCCGCCCAGGCTCTACGAAGTGCTC
GCCCCAGCGGAATTATGGAAACGAAATCCATCGTGGTCGGCCGTCCTCCCCTCATTCATAGTGGG
CTCGAGGGTGACTGGTCGAGTAAATGAAAGTCTACTTCTCGCATTAAGAGAAAGAATGGGCGAGT
TACTGCCTGAGTGCCGAGGGGGCGGTTCCTCTCAATGTATTATATTATAACAATCAAACTCATAC
AAGGAGCATCAAAAGTCAAATTCACAGGTTTTTCGGTTCAAATCTCTTAAGCTAAGCTTTTTTCT
TCCCGACACAGTGGCACTCCTTTCATCTTTGTCTCCACTCAACCCCAGCTCGCAAAGCCGTTGAT
TTCCGCTGTGCATTCGGTATCAGATACACTTGCACGAGTCTCACGAATTGGATTCGAACCAATAT
CAAGCTACTTGCCCTTTAGTAGATCGTGAGTGGTCTGTCGTCCTC
Right flanking sequence: Indices 688768 -- 689267
CCTAAAATCAATAGCATTTCGTCGGAATACATCCTGTCTTTTCACCTTAGTTGTCCTATGCATAG
TCAGTACTATAGCCCCAATCATGGCTACTAATAAAATCAGACTAGGAACCAAAAACCAGACGGAA
TAGTAGGTATAAAGTAAATTTCCCAATGTTTCCAAATTAGTCCAACTTCGTACCTTTCCGGCATA
AACCGTATATCTCAGAGAGGTCGTATTTCTTTGGGTTGGTAGTAATGGAATGGTTTCATTATCTA
AAATGAAGAACATTTCCCACCAAAAGATCAGTCCAATAATACCACTCACTGGTAAATAGCGCAAT
ACTTCTTCGTGAATCTCCGCTATTTGAATATGGAACATCATAACAACGAATAGAAATGAAACGGC
TATAGCTCCTATATGAACTACTGGGAAGATCATAGCGGAGAAGTCGAGACCTAACAAAAGAAGTA
AACCTGAAGTGTCGCGAAAGACTGGGATGGAAAACAAAACGGAAT
Found at i:690184 original size:3 final size:3
Alignment explanation
Indices: 690170--690204 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
690160 TTGATTCTGA
*
690170 TTC TTA TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
690205 ATAGTCAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Left flanking sequence: Indices 689670 -- 690169
GCAGTCTTCTACTTCTAGTCGACTGCTCTATTCTATGACGGGCTTCCCTCTTTCCTGGGCTCTGC
TCGCTCGTCTACGCTCCGACCCAGCAAGTAATAATTGAAAAACGATCTTTCTTTGCAGATTTCAA
ACTTGTTGTCAAAAAAAAAGGCAAGAAAGAAAAAGAAAGAAAAAAAAAAATGGAAATAGTGAATC
AAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATACCTATCTATATGGATAGAAAT
CTATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGATATGTCCCTATGAGCGGCTACGCC
GATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGAGGAAGGTTTGGATCTTTCAATCT
TATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGCTTTTAGTGTTCTATGAT
TCACCTCCGAATAATGAGTAGGTAGTTCAATCCTTTTGATTCTGA
Right flanking sequence: Indices 690205 -- 690704
ATAGTCAACTTATGGGGGGATGCGGAGCGATAGGTCTTTTTACTATATAAAGAAGAGTTGTAAAC
TATAGGACTGATTTTTCGAGTAGGAAATTTGCGGTTTTTCTCGTTCCTTCTCTTCGATAAGAATA
GGGATTTTTTTTGATATAAATTCCTCTTCATTTTGTTGTGCTCAGCGAGGGAACTGCCTAAGCAT
ACTTTTTCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTTTTTTTGCATAGAAGAACGCAACTG
TTGCAAAAACCGGGATTTTAGTAGTAGGCGGCATCCCCTCTTAGTTTTGAGTAGGTGGAACCATT
CAGTTTTGGTTCTTCTCCACATTCTTACCGGTTGATTCAGGAATTTTCCTATTATTTTTTCAACT
GATATTTCGATATAGAAAGATCTCCTTATTTCTTCACCGCGGATTCTCGCGTCATTTTCTTGAAA
AGATATTATATCACCGTGGGAAAGTCTCAAATGAGTAATGCTTAC
Found at i:725169 original size:12 final size:12
Alignment explanation
Indices: 725152--725176 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
725142 CTGACCTTAC
725152 TATAGGTGGTAA
1 TATAGGTGGTAA
725164 TATAGGTGGTAA
1 TATAGGTGGTAA
725176 T
1 T
725177 TTGTCCCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (12 bp):
TATAGGTGGTAA
Left flanking sequence: Indices 724652 -- 725151
GCTTCCAGCCCCCTTGCAATTTCTTGTTTGCTCACGTATACCTATGCCCAGCCCCTACTTTCTTT
CCTTCACAGCAGTGGATCACACTACTTTAGTCAACTATGTACACCCGGTAGTTGCAGTTCCTTTC
TTAACTCCACTATTCTCAGTATCAGCCTTAGCCCTGAGACCTGTAGCTTCGTCATGCGAACCATA
CGCCTTTATTGACGTTCACTCGGCGCTAGCCTCTTTCCTTACCACCTGAACTTATAAGGTATAGT
AGAACAATGATCCCCCTAACTATCTTTCTTATTATCAATACAACGGAGACCGCCTTACTTGTCGC
GGAATAGACGTTTGCTCGCCTCTGCCCTGATAGCCAGTCTGTACGTTGTGACTAGGAGAAGCAAG
CCGGTAGCAACTACAAAACCGTTGCCGACCTTACTGAGCCCTTACCTGGATAAACTTAGATTAGC
TGTTAGCTTTGATGCCACACCAATGCTTACAAATGCTGACCTTAC
Right flanking sequence: Indices 725177 -- 725676
TTGTCCCTGACCGGAGCTGCTTTCTCGCTTGCTTGCCTCCCTTATTTTCTTGCTTTCTAACGACT
GTAACTGAAACTTGGCAACCTTGTTTATTAGAAAGATATGATGACCTTATTGATCGAAGACTTGC
TGCTTCCCTTATTTCTGGCAAGGCGTATCAATTAAGCAAATCTGAGGCTTGCTGCTAGGTTTCCA
CGTCTTTTTCGCATAAAATGACCTTTCTTTCTGGACTTGACAATGACCTGCCTTTAAAAAACGTG
ACGTGTAACCCTAAGCTGCTTTTCGGGCGTAGCAGGCTAGCGCTCTGGGTTGGCATGACACAATT
ATTCCGTTCTGGTGTCAAAGCAGCGTGAGGGGAAGCTAAAAGCAGAAAACTTGCACTATTGAACG
AAGACGAAAAGCATACTGGAAAAGAAGATTTGTTGAGATTGAAGGCAAAATAGCAGTCCTGACCG
CGAACGAAGACGAAAGGGGAAGGCTAGCTTTGGGTTGAACACCGA
Found at i:726389 original size:23 final size:22
Alignment explanation
Indices: 726361--726403 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
726351 ATATTCTCTA
726361 TTAAGAAGGAATATTAACCCTTC
1 TTAAG-AGGAATATTAACCCTTC
*
726384 TTAAGATGAATATTAACCCT
1 TTAAGAGGAATATTAACCCT
726404 CTTCTTCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.33
Consensus pattern (22 bp):
TTAAGAGGAATATTAACCCTTC
Left flanking sequence: Indices 725861 -- 726360
GTGCTTTTGGGAAAATGTGTAGAATAATACACCTACCAAGACGAAAGCCAAAGGTCAATCTCGTA
GGTGCACGTATCGAACCAAAATAAGATCTCAGATTGACATCTTGATACACTAATTTACCATAATA
ATATTCACTAAACCAACTTGAATCTGAACTACGATTGAGATACATTCTTACCGAAATCGGATTTC
CTTTTCTTGCCATATGCGCTTAGACTTTCCTTTTTCCCCTTTTTTCTTCCCGATCCAATAGAAGT
CAGATGTATGTCGTCCGACCCAACCGAAGACGAAGACTCTTTGTAAAAGCCAAATTGTTGACCCG
AAAGAATCAATGAAGAAATATTGCATATTCCCAATATATTATATAGATAGGAGAGATTGCACAAA
GACGGAATCAAAGACGGAGTCTCAAATTCGTCTATATCTTCATTCAATACAATATTGAAAAACAA
TCTTTCTTCTTGCCATATTCCCTCTCCCTTTCTTAATATTCTCTA
Right flanking sequence: Indices 726404 -- 726903
CTTCTTCCTTTGGTCGAGTCAGCTTTCGGGTTCCTCTTTGCCCAAGTAATCTCATCAATATATGT
TCTTTCTTGTCCGCAGTCCTACGATAGGAGACTGATTCAATAGCTACGGATCCTCACCTAAAACA
AGTGATCCAAGGAGCTTAACTTGACTAACAATTAACATTGCCTCACTCTTCAAGCAAGTTCCTCG
CACCTAACTCTGAACGAGATGAGCCCTCACTCCAGGAAGTGCGCGAATGAACTTTCACTCTTTGT
TCACCGCAAGGGAAGATGAGAGAAGAGTGAAACTGGGTCCGGGCGGACCTTGACTTGACTGGATC
GTGAGCAACAAGATTACATCTTGCCAATTGGTTTCTCTTTCGAGCCCAAAAGATCGAATGAAGGA
CGGATCCTTCGCTTCTCGTCGTTGGTCGTGAACGGAGTCACCCGCCTTGCGCACTGAACGAGATC
TTGTACCATACACGGAACACTAACCCAATCTCGACGAAAGAATTA
Found at i:750109 original size:38 final size:37
Alignment explanation
Indices: 750058--750129 Score: 126
Period size: 38 Copynumber: 1.9 Consensus size: 37
750048 TAAGAATGCT
*
750058 GGTTTTAAGAATGAGTGATTGCTCCTTCTCCGACCGCC
1 GGTTTTAAGAATGAGTAATTGC-CCTTCTCCGACCGCC
750096 GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACC
1 GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACC
750130 CTTACTGCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 12 0.36
38 21 0.64
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (37 bp):
GGTTTTAAGAATGAGTAATTGCCCTTCTCCGACCGCC
Left flanking sequence: Indices 749558 -- 750057
CCTAGGTATCCACCGTAAGCCTTTCCTTGTTTGAACCTCGCCCTTAACTTTACTTTAAGGCTATG
CCATCCTAAGGTGCTGCTAAATGGAAGGATCTTATCAACGTCCATGAATGATAAACCATAGATCG
AACTGCCGAATCGGAAAAATTGGGTGCTATCATATTCATATAGCTTTGTATCGGCTAAGTTCACG
AGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCTCAGGCC
CCCACTGATTCTACCATAGAGGCCAACGATAGACAATAACTCCCCCCCGAACACAGCTTACAACT
TTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGTGCTGAGTTGGAAT
CCCATTCTAAGTAAGGATTCTTGTGGTTCCGGAGGATCCAGCTACAGGAGAACCGGGAACGGAGA
GCTTTCCCCCCTTTTCCGCCCCGACTCTTTGGTCTTAAGAATGCT
Right flanking sequence: Indices 750130 -- 750629
CTTACTGCCCAACCTGAGAGTGGACAGCTAATGCATTCCACTTATTGAGCAGGGTTCTATGGTCG
GTCCGCGACCCCTGGATACCGAAGGCGTCCTTGGGGTGATCTCGTAGTTCCTACGGGGTGGAGAC
GATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGTCGCATTTCGCTCAAAGGGTTGAAGGGAGAT
AGTGCATCAAGCTGTTCGCAAGGGCCAACTTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAAC
CCTAAGAGAGCCGCCGACTCCAACTACCGTCCATGTACGATCCATACTAGATCTGACCAACCGCC
CATCCTACCTCTTCTACGTTCTTGACAGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGGCATGT
TTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATT
ACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCA
Found at i:759723 original size:24 final size:21
Alignment explanation
Indices: 759666--759709 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
759656 GTAAGATAAA
759666 AAATTGATTATTAATTTAATC
1 AAATTGATTATTAATTTAATC
*
759687 AAATTGATTATTAATTTTATC
1 AAATTGATTATTAATTTAATC
759708 AA
1 AA
759710 TTATTTGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (21 bp):
AAATTGATTATTAATTTAATC
Left flanking sequence: Indices 759166 -- 759665
TTAGTAAGAAATGAAGCTCTGCTTCTGTGTTTCTCTTGTATTGCTTTGTCGTTCTACGTTTTTTC
ATGTCAGATCCCGCATACTTTTCTTCAACATCTTTTTCTTGGTTTGAGAAAACTGATCCAAGACT
TACTTGGTTTTGTGCATATGATCTAGGATTTCCTTTTGCGTTGGGTTCTTTTTCTTCTTGACTTC
CATTCTCTAATTCAAGAGATTTTTTTTGATTCGATGATATAAATATAATCTTCCTATCTTCCTTT
TTCTTTCCAGTTGATCTAGGATTTCCTTTTGCGTTTCCATTAAAATTGAAAAGAAGTAATTTGAT
TGGTATGATCCACGGTTTCGTTTTATATGCATTAAAAAGTCGCCCAATCTCTGGGAAGAAACCAA
GTTCCCGATTTGATATAGGATGACTTAGTATTTCCTCATTCATTCCTCAAAAAAGGTTCTTTTTT
GGTTTTTTGGGTTAATTTCTTCATTTTGATGAATTGTAAGATAAA
Right flanking sequence: Indices 759710 -- 760209
TTATTTGATAATTATCCGTCTCGATCTGAGTATTGTGATTCCTGTTGGTACCAGTATCCATATCA
ACCCAGGATTGAATCTCGATATTATTTCTAAGACAAAAATTGAGAATTCTCCAATCACAATATTT
TCTATCCGAAATTTTCTCTATATCCATATCCATAATATCGTCTTCCCCTAGATAATTATTGATAG
GGATACCTCCCAGGATACCAAATAAGTTTCCTTTCCGTAATTATAAAAACTTGATTCTTTACTTG
GGCGGTTGGAATCTTTCCATTCCGTACATATTAGTTCCTGAGCTATTTTCAATAAATAAAGCGGA
TGGAATCTTTGGAACGACAATTGGTATCTTTATTACATTAGCTAAAACTTATTTTTTTTGTTCTT
GTTCATTCCTATCACAACAAGATGGACTTTACCTAGATTAAGAATGGACCAACTATTAAATCTTG
GCTGGAAATTTCTTTTACCTATTTCTCTCGGTAATCTATTATTAA
Found at i:776874 original size:119 final size:119
Alignment explanation
Indices: 776663--776895 Score: 466
Period size: 119 Copynumber: 2.0 Consensus size: 119
776653 TCCCTGCAGT
776663 TGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAAT
1 TGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAAT
776728 TAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAGGATCG
66 TAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAGGATCG
776782 TGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAAT
1 TGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAAT
776847 TAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAG
66 TAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAG
776896 AAAGTGGATT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 114 1.00
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.28
Consensus pattern (119 bp):
TGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAAT
TAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAGGATCG
Left flanking sequence: Indices 776163 -- 776662
TATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTGAATAAGGCAGTACCTGAAGGTTCAC
AAGCGGCTGAATATTTATTCCATAAGGGCTTATTCGATCCAATCGTACCACGTAATCCTTTAAAA
GGTGTTCTGAGTGAGTTATTTCAGCTTCACGCTTTTTGTCCTTTGAATAAAAATTCAATCAAGTA
GGGTCTTAAGTTAAATTTTGATTGTGATGAACAATTAGTTAGTTTATCAGAATCAAAATAAAACA
AAACCTGAAAAATGGACTTTTCTTTGGTGACATAAGATTTAATTGTAGAAAGAATCATGCGAATA
ATTATTTTTTTTTTACCGATATTACTGATTAGTAAACCTCTATCAACAAAACAACATAAAAAGCG
AATTCTTCCTTAGAATTAGGAGGCAAGGCAAATAAAACGAATTTCATGGTCCCCTCTTTCATCTT
TCTATATATCCCAAGAAGCCCGTTTTTTCTAAGAATCCCTGCAGT
Right flanking sequence: Indices 776896 -- 777395
AAAGTGGATTATCATACATATATTTCATGTAGAAAGATGAATAAGTCCGTTTATTTAGTTCTACA
TGCCTTGCACTTATTAGATATACTTACTTAGATATACTTAGTATAGATACTTAGTATACTTATAC
ACGAATTAGAATATGACTTATAATTATTATAAGATATCTTTATAATAATAACAGGTACAAATATT
AAATCGAGGTACCCATTCTATGACAATTCTCAACAACTTACCCTCTATTTTTGTGCCTTTAGTGG
GCCTAGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAATAAGATTTTT
TAAATCCGACGTGGTCAAATCTCCTCTAGTTTTTTTTTCAAGACTTAGCGAACACGCATATCCAT
TTAGTAGAATATTGTATAACAATAACAGGTGGCTTTCTCCGAACATAAATGAAAGAGCTCTTATG
CATGCATAAACATGATATATGGGTAAATGAATTCTATCTATTTTC
Found at i:776993 original size:14 final size:13
Alignment explanation
Indices: 776969--777000 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
776959 CATGCCTTGC
776969 ACTTATTAGATAT
1 ACTTATTAGATAT
776982 ACTTACTTAGATAT
1 ACTTA-TTAGATAT
776996 ACTTA
1 ACTTA
777001 GTATAGATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (13 bp):
ACTTATTAGATAT
Left flanking sequence: Indices 776469 -- 776968
AGAAAGAATCATGCGAATAATTATTTTTTTTTTACCGATATTACTGATTAGTAAACCTCTATCAA
CAAAACAACATAAAAAGCGAATTCTTCCTTAGAATTAGGAGGCAAGGCAAATAAAACGAATTTCA
TGGTCCCCTCTTTCATCTTTCTATATATCCCAAGAAGCCCGTTTTTTCTAAGAATCCCTGCAGTT
GGATCGGATTCTAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAATT
AGAAGATAAGAACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAGGATCGTGGATCGGATTC
TAACGAATCTTTCGGGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAATTAGAAGATAAGA
ACAATAGAAAAAGCAAAATAAAATAAGAATAATAAAGAAAGTGGATTATCATACATATATTTCAT
GTAGAAAGATGAATAAGTCCGTTTATTTAGTTCTACATGCCTTGC
Right flanking sequence: Indices 777001 -- 777500
GTATAGATACTTAGTATACTTATACACGAATTAGAATATGACTTATAATTATTATAAGATATCTT
TATAATAATAACAGGTACAAATATTAAATCGAGGTACCCATTCTATGACAATTCTCAACAACTTA
CCCTCTATTTTTGTGCCTTTAGTGGGCCTAGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCT
TCATGTTCAAAAAAATAAGATTTTTTAAATCCGACGTGGTCAAATCTCCTCTAGTTTTTTTTTCA
AGACTTAGCGAACACGCATATCCATTTAGTAGAATATTGTATAACAATAACAGGTGGCTTTCTCC
GAACATAAATGAAAGAGCTCTTATGCATGCATAAACATGATATATGGGTAAATGAATTCTATCTA
TTTTCAAAAATAGGTTCGGATCCGAGCTCATGTCTGAAATTTAAGTCAATGTATCTATATGTATG
TAGCTATCTAGAGGGAATCCTAAGAGGGGGCTGTTCTTATTTTAT
Found at i:777012 original size:13 final size:13
Alignment explanation
Indices: 776994--777018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
776984 TTACTTAGAT
776994 ATACTTAGTATAG
1 ATACTTAGTATAG
777007 ATACTTAGTATA
1 ATACTTAGTATA
777019 CTTATACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (13 bp):
ATACTTAGTATAG
Left flanking sequence: Indices 776494 -- 776993
TTTTTTTTACCGATATTACTGATTAGTAAACCTCTATCAACAAAACAACATAAAAAGCGAATTCT
TCCTTAGAATTAGGAGGCAAGGCAAATAAAACGAATTTCATGGTCCCCTCTTTCATCTTTCTATA
TATCCCAAGAAGCCCGTTTTTTCTAAGAATCCCTGCAGTTGGATCGGATTCTAACGAATCTTTCG
GGAATTTTTAAGAAACTCTTTTTTTATTAAAAAAGAAATTAGAAGATAAGAACAATAGAAAAAGC
AAAATAAAATAAGAATAATAAAGGATCGTGGATCGGATTCTAACGAATCTTTCGGGAATTTTTAA
GAAACTCTTTTTTTATTAAAAAAGAAATTAGAAGATAAGAACAATAGAAAAAGCAAAATAAAATA
AGAATAATAAAGAAAGTGGATTATCATACATATATTTCATGTAGAAAGATGAATAAGTCCGTTTA
TTTAGTTCTACATGCCTTGCACTTATTAGATATACTTACTTAGAT
Right flanking sequence: Indices 777019 -- 777518
CTTATACACGAATTAGAATATGACTTATAATTATTATAAGATATCTTTATAATAATAACAGGTAC
AAATATTAAATCGAGGTACCCATTCTATGACAATTCTCAACAACTTACCCTCTATTTTTGTGCCT
TTAGTGGGCCTAGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAATAA
GATTTTTTAAATCCGACGTGGTCAAATCTCCTCTAGTTTTTTTTTCAAGACTTAGCGAACACGCA
TATCCATTTAGTAGAATATTGTATAACAATAACAGGTGGCTTTCTCCGAACATAAATGAAAGAGC
TCTTATGCATGCATAAACATGATATATGGGTAAATGAATTCTATCTATTTTCAAAAATAGGTTCG
GATCCGAGCTCATGTCTGAAATTTAAGTCAATGTATCTATATGTATGTAGCTATCTAGAGGGAAT
CCTAAGAGGGGGCTGTTCTTATTTTATTATATCTAACTAATTTGA
Done.