Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_040989
Parameters: 2 7 7 80 10 50 500
Length:  520691

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1268--1407
70
2.0
70
100
0
280
37
20
22
20
1.95
11627--11694
35
1.9
35
96
0
127
22
14
27
35
1.93
33484--33531
23
2.1
23
92
0
78
31
29
0
39
1.57
39584--39650
24
2.8
24
97
0
125
1
29
29
38
1.66
54720--54756
12
3.2
12
85
14
60
67
8
0
24
1.17
54719--54754
10
3.4
10
88
11
54
69
8
0
22
1.15
59343--59370
14
2.0
14
100
0
56
28
21
7
42
1.79
73426--73469
21
2.1
21
91
0
70
40
15
9
34
1.79
85951--85990
20
2.0
20
100
0
80
45
5
25
25
1.73
86010--86054
22
2.0
23
91
4
74
35
8
40
15
1.79
121633--121772
70
2.0
70
100
0
280
37
20
22
20
1.95
131986--132039
8
6.2
8
76
16
54
22
24
3
50
1.65
131986--132039
26
2.1
26
100
0
108
22
24
3
50
1.65
139912--139943
15
2.1
15
100
0
64
28
6
6
59
1.46
160474--160498
12
2.1
12
100
0
50
52
0
24
24
1.48
165799--165863
34
2.0
32
85
11
89
13
26
26
33
1.94
176394--176433
20
2.0
20
95
0
71
15
27
0
57
1.38
181686--181815
42
3.1
42
98
0
251
24
20
45
9
1.80
190679--190746
35
1.9
35
88
5
102
47
22
13
17
1.82
206677--206743
21
3.2
21
81
8
66
37
22
26
13
1.91
209179--209240
30
2.1
30
100
0
124
14
19
9
56
1.65
253168--253249
27
3.0
27
91
3
103
51
2
37
8
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255372--255405
17
2.0
17
100
0
68
23
0
11
64
1.26
291990--292045
25
2.2
26
80
6
69
21
16
19
42
1.89
305557--305587
9
3.6
9
91
8
55
0
19
0
80
0.71
305558--305596
17
2.3
17
86
0
51
0
17
5
76
0.96
320096--320161
33
2.0
33
100
0
132
45
12
21
21
1.84
321207--321258
21
2.5
21
96
0
95
48
11
19
21
1.80
331695--331727
14
2.4
14
90
5
50
48
18
9
24
1.76
341353--341399
24
2.0
24
83
8
60
17
12
14
55
1.70
345132--345175
23
1.9
23
90
0
70
40
6
15
36
1.74
350441--350501
20
3.1
20
86
13
99
68
4
4
21
1.27
350442--350502
19
3.2
19
86
13
97
67
6
4
21
1.33
415847--415884
16
2.4
16
86
4
51
42
7
18
31
1.79
430333--430376
22
2.0
22
100
0
88
40
13
31
13
1.84
448441--448479
20
2.0
20
94
0
69
43
28
5
23
1.75
450728--450795
26
2.6
26
83
4
84
41
17
17
23
1.90
469850--469877
11
2.5
11
100
0
56
71
0
21
7
1.09
497747--497790
23
1.9
23
90
0
70
40
6
15
36
1.74
517724--517753
15
2.0
15
100
0
60
20
40
6
33
1.78

Tables:   1

The End!