123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046--2104	27	2.2	27	100	0	82	28	10	50	10	1.68
2111--2160	26	1.9	26	100	0	100	24	20	26	30	1.98
4014--4199	88	2.1	88	100	0	372	26	33	17	22	1.96
4200--4436	1	237.0	1	100	0	474	0	0	100	0	0.00
4516--4586	24	3.0	24	93	4	126	26	25	25	22	2.00
4754--4804	25	2.0	25	96	0	93	29	27	19	23	1.98
4855--4930	35	2.1	37	90	4	120	18	39	14	27	1.90
4900--4995	27	3.6	27	70	6	81	23	31	20	23	1.98
4900--5020	52	2.3	53	90	4	183	22	30	21	25	1.99
6512--6615	51	2.0	51	100	0	208	30	29	15	24	1.95
11042--11067	13	2.0	13	100	0	52	30	15	46	7	1.74
12427--12501	24	3.2	24	92	3	125	22	25	26	25	2.00
12538--12639	36	2.8	35	83	15	127	25	16	37	20	1.93
12611--12734	25	4.8	25	78	5	140	22	21	29	25	1.99
12675--12734	27	2.3	25	85	5	84	20	23	30	26	1.98
12870--12920	25	2.0	25	96	0	93	23	19	27	29	1.98
12781--13106	101	3.0	111	87	9	539	30	24	23	21	1.99
12971--13021	25	2.0	25	96	0	93	23	19	27	29	1.98
13266--13309	23	1.9	23	100	0	88	20	27	27	25	1.99
14947--15047	51	2.0	51	100	0	202	23	34	27	13	1.93
16854--16912	16	3.8	16	73	8	68	32	23	18	25	1.97
17360--17424	35	1.9	33	87	6	94	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18539--18589	23	2.2	23	82	6	59	39	17	25	17	1.92
19509--19540	16	2.0	16	93	0	55	34	18	43	3	1.66
19663--19718	15	3.9	14	80	13	60	37	10	32	19	1.86
19777--19817	19	2.2	18	87	12	57	46	0	51	2	1.14
21115--21164	27	1.9	25	87	4	64	50	8	16	26	1.72
21337--21384	24	2.0	24	95	0	87	22	25	25	27	2.00
22229--22260	16	2.0	16	93	0	55	40	18	18	21	1.91
25080--25107	14	2.0	14	100	0	56	14	28	7	50	1.69
26680--26710	12	2.6	12	94	0	53	29	3	48	19	1.64
26798--26844	21	2.2	21	84	0	58	42	29	19	8	1.80
28777--28808	15	2.1	16	94	5	57	25	37	12	25	1.91
28934--28997	21	3.0	21	100	0	128	23	23	25	28	2.00
29143--29179	16	2.3	16	90	0	56	37	13	37	10	1.80
29443--29508	33	2.0	33	96	0	123	18	6	37	37	1.75
29367--29584	109	2.0	109	99	0	427	18	15	31	34	1.92
29476--29767	76	3.9	76	97	0	550	18	19	29	32	1.95
29762--29883	61	2.0	61	90	3	192	14	36	18	29	1.91
29762--29867	29	3.6	29	69	20	92	16	36	18	28	1.92
31132--31159	9	3.1	9	100	0	56	10	53	25	10	1.67
31181--31298	16	7.4	16	66	11	80	17	21	41	19	1.90
31167--31304	32	4.3	32	100	0	276	20	20	42	17	1.90
32292--32317	6	4.3	6	100	0	52	50	15	19	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34317--34372	29	1.9	29	92	0	94	32	17	14	35	1.90
34361--34385	13	1.9	13	100	0	50	56	20	8	16	1.65
34333--34468	42	3.2	42	96	0	245	38	19	12	30	1.88
34403--34427	13	1.9	13	100	0	50	56	20	8	16	1.65
35185--35258	36	2.1	36	100	0	148	22	18	13	44	1.85
35380--35447	29	2.3	29	100	0	136	19	5	32	42	1.75
35619--35701	26	3.2	26	100	0	166	27	13	39	19	1.89
36957--36984	9	3.1	9	100	0	56	10	53	25	10	1.67
39519--39548	15	2.0	15	100	0	60	20	26	26	26	1.99
41732--41769	20	1.9	20	89	10	60	26	26	13	34	1.93
43301--43340	20	2.0	20	85	9	55	12	37	17	32	1.87
44726--44757	14	2.3	14	94	0	55	25	37	18	18	1.94
45112--45144	13	2.5	13	95	0	57	39	30	12	18	1.87
47027--47062	12	3.0	12	91	0	54	19	22	30	27	1.98
47779--47811	1	33.0	1	100	0	66	0	0	100	0	0.00
48130--48154	12	2.1	12	100	0	50	32	44	0	24	1.54
48185--48248	16	4.0	16	74	11	51	28	39	4	28	1.77
52171--52211	21	2.0	21	100	0	82	14	41	19	24	1.89
52259--52458	88	2.3	88	100	0	400	27	31	18	23	1.97
56966--56997	14	2.3	14	100	0	64	59	0	12	28	1.34
58363--58403	21	2.0	21	95	0	73	14	39	14	31	1.87
61011--61047	14	2.6	14	95	0	65	16	48	5	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61022--61071	14	3.6	14	86	5	66	18	50	8	24	1.73
61601--61631	15	2.1	15	100	0	62	32	12	29	25	1.93
65218--65290	37	2.0	37	84	10	96	35	24	21	17	1.95
65387--65458	34	2.1	36	86	5	103	36	25	22	16	1.94
66163--66225	25	2.5	25	86	0	90	26	9	28	34	1.88
69736--69760	13	1.9	13	100	0	50	20	24	16	40	1.91
71749--71794	24	1.9	24	81	0	56	13	34	10	41	1.79
74229--74257	15	1.9	15	100	0	58	27	24	34	13	1.93
76014--76061	15	3.4	15	72	16	57	41	10	10	37	1.74
76005--76072	27	2.5	27	100	0	136	41	10	10	38	1.73
78936--78997	20	3.5	20	67	28	66	27	9	43	19	1.82
78894--79041	33	4.6	33	88	7	184	25	7	43	22	1.79
79965--80075	56	2.0	56	100	0	222	18	34	22	25	1.96
82312--82347	18	2.0	18	88	0	54	30	33	11	25	1.90
83877--84093	90	2.4	92	85	4	287	32	17	25	24	1.97
84239--84264	13	2.0	13	100	0	52	15	53	15	15	1.73
84315--84357	13	3.2	13	83	3	50	30	44	20	4	1.72
86902--87028	68	1.9	68	89	0	200	15	24	30	29	1.96
89891--90175	153	1.9	153	99	0	561	20	24	24	30	1.98
90189--90219	11	2.8	11	100	0	62	0	64	0	35	0.94
90356--90457	51	2.0	51	100	0	204	17	39	19	23	1.92
90434--90538	27	4.0	26	77	7	106	24	29	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90610--90679	24	2.8	25	86	4	115	28	28	21	21	1.99
93081--93111	15	2.1	15	100	0	62	35	32	0	32	1.58
93871--93908	17	2.3	17	86	4	51	15	13	44	26	1.83
95460--95489	15	2.0	15	100	0	60	46	6	26	20	1.75
96064--96117	18	3.2	18	65	24	53	35	5	44	14	1.69
100238--100296	27	2.2	27	100	0	82	28	10	50	10	1.68
100407--100494	31	2.8	33	70	18	87	23	22	31	21	1.98
101487--101531	22	2.1	22	91	4	74	15	28	17	37	1.91
102239--102289	20	2.5	20	100	0	102	3	49	19	27	1.66
102234--102291	20	2.5	24	76	23	79	3	50	17	29	1.62
103316--103347	16	2.0	16	93	0	55	25	18	28	28	1.98
104216--104327	46	2.4	46	83	0	143	25	22	35	16	1.95
104287--104319	14	2.4	14	94	0	57	27	18	30	24	1.98
105881--105917	14	2.6	14	100	0	74	21	10	32	35	1.88
108008--108036	13	2.2	13	100	0	58	27	31	20	20	1.98
116020--116052	16	2.1	16	100	0	66	42	30	15	12	1.83
116189--116236	16	2.8	17	78	12	53	12	31	0	56	1.37
116553--116661	43	2.7	39	83	14	143	38	26	15	19	1.91
118203--118274	24	3.0	24	100	0	144	20	25	33	20	1.97
118651--118696	23	2.0	23	86	4	65	21	39	21	17	1.93
120747--120786	20	2.0	20	100	0	80	10	35	5	50	1.58
121026--121084	21	2.8	20	92	7	84	28	20	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121035--121092	21	2.8	21	94	2	100	27	22	13	36	1.92
124494--124545	20	2.6	20	100	0	104	3	50	19	26	1.65
124489--124547	20	2.5	24	74	25	72	3	50	16	28	1.61
124534--124591	27	2.1	27	100	0	116	10	50	10	29	1.70
124543--124613	27	2.6	27	84	0	79	16	38	16	28	1.91
124790--124864	24	3.1	24	94	1	123	28	25	24	22	2.00
125695--125795	32	3.0	34	78	11	136	24	28	22	23	1.99
128364--128485	54	2.3	54	89	2	183	27	21	28	22	1.99
128757--128815	27	2.2	27	100	0	82	28	10	50	10	1.68
128817--129017	88	2.3	88	100	0	402	22	18	31	26	1.97

Tables:   1   2   3   4   5   6   7   8