Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039738
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 722009
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:2935 original size:28 final size:29
Alignment explanation
Indices: 2861--2942 Score: 82
Period size: 28 Copynumber: 2.9 Consensus size: 29
2851 GGTTTGAAGA
*
2861 CGCTCGACTGATAAGGAGAGGTATGAAAT
1 CGCTCGACTGACAAGGAGAGGTATGAAAT
* * *
2890 CACTCGA--G-CGAAGCGAGAGGCATGAAGT
1 CGCTCGACTGAC-AAG-GAGAGGTATGAAAT
2918 -GCTCGACTGACAAGGAGAGGTATGA
1 CGCTCGACTGACAAGGAGAGGTATGA
2943 GATTGCTTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
27 9 0.21
28 22 0.52
29 10 0.24
30 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.34, T:0.16
Consensus pattern (29 bp):
CGCTCGACTGACAAGGAGAGGTATGAAAT
Left flanking sequence: Indices 2361 -- 2860
AATAAGTACGTTAAGGTTACGAAGTCACTTAGCCGTCTACAAAGGGAAAGGCGTCGGTACGGAGT
CACGTCAGCTGTGGATATAGACTAGGCTATAAGGAAAAGAGTCTTAAACTATGGACCGAGACTAC
ACTAAGGAACAAGGAAGCTTGACTGAGCAAAGAAGTCAAGGAACGAAGCTGCTTCTCTAATAGCC
CCGTTGAATAGGAGGCGAAGGCTTTTTTTTTGTGTAAATGCATTTTTTTGAATTTGTATTTAGAG
AGAGAGGGCTTCAAGTTCTTAGGAAGAGCCGTACGAGGCAGCTCACGTACGGTTCGGGAGCCGAG
CCCCAGCACAGGCAGGGGCTTAGGTCAACACTTATATAATAGCCAGTCATCAATTGGAAGCGGGC
AAGATGGTGATGAATTGCAATTGGTCTAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAA
TGCCAATACATACTAAGACCTTATTCACATCAGGAGGTTTGAAGA
Right flanking sequence: Indices 2943 -- 3442
GATTGCTTGTTAGAGTTCGTCAGTGTCACTAGGTTTGAAGGACGCTGAAGTTATCGGGTCGAAGC
TTTTTTTTTCCGGTATGCCGCTCCGCGAGAAAGGAAAGGAGCGAAACGAAAGAACCAAGTGGGTT
GTGGTAATGTCAGAATTTGCACCTATTTGTATCTGTTTAGCGGTAAGTCTGCTAGTTTCTGTTAT
CTTACTTGGTCTGAATTTTTGGGTTTTCTTAATAGATTTTTTCTTGTTTTTTTTGCTACACTCGT
TCCCACTGGTAAAGAACATTCCAAAGAGACTTTTACTGCATTTCGAAATGGTCTTTCTTTTTTTT
TTGTATAAATCCTTCGTTTTTATTGAGTGTCTTTGGATGGACGAGCTTTTTCGTGCGGTTTCTCA
GTTTCTCCCAGATGCGCCGGGAGGGATGTCAGGAGGGTTCAATCAACCTTCTGCCCCGGAGGGGT
CTTCTGGGCTTCCCTTTCTAATTGACAATGATAATCCGGATCGGC
Found at i:87221 original size:17 final size:17
Alignment explanation
Indices: 87199--87232 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
87189 TCCCAGCAAG
87199 AGCAAGAAAACGGATGC
1 AGCAAGAAAACGGATGC
87216 AGCAAGAAAACGGATGC
1 AGCAAGAAAACGGATGC
87233 GCGTCTAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.29, T:0.06
Consensus pattern (17 bp):
AGCAAGAAAACGGATGC
Left flanking sequence: Indices 86699 -- 87198
TCGTTCATTATATATAATATGAACTGGAATATGAAGAGCTGTAGTGATATCTACATCAACGCTGA
CTGAAGCGAAGTGGCCCATCGATCGATTCCTACTTTTTAAATAGATTGCAACGGGTCGACCTACT
GCCTTAGCCATGGTTAAGAGCTCCCATTTAGTCCTTGCCGATTTTTGTGCCCCAGATAGAGGAAT
CTGATCCATACCAGGGCGTGGTTCATCCTCTGGTTTTAGGGTGAAAATCTGGAGACCACTTGGTG
AGTCTCATCAGTTGGCCTTCAAATAACCACGGACCGCCTTTCCAGATTCTAACCATATCATTTTC
GTTTGAGAGACGAATCGCAACAACCCCAAAAGATGGTTTATTCCAGTCACCTTAAGGGTGAAAGA
GCTCTTCTGCCGGAACCTGGACTTCTTCCTTTTTTCTCGCTCTGGCATTAGTAGCTCTGCCATTC
CTGTTGCCTTTCCATCTTATCTTTCCTACCTCCTCTCCCAGCAAG
Right flanking sequence: Indices 87233 -- 87732
GCGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCTAACGCGCA
ACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCTAACGCGCAACGGCTTTCGCTAA
CGCTCAGTCCGTTGCTTGTTCGTCTAACGGCTTTCGCGCGTTTGCGCTCGGGCCGGTGCTTGTTC
CTCTAGCTTAAAATCCCTTCATTATACGCATTGTTGTTCCATCTCTTTTTCTTTTCTTGGAAAGA
AGTAGATCTCACTGCTTAGCGAGTGGAGACACTCGGATTATGCTGGTGCCTTGGGAATGCTGACT
TGAGTATGCTAGGATTGGAAGCTAATTCAACTAGGACCTCTTGTCTTTCTTTTCCTTAAGGATTG
AATTTCTTAACGCGATTCAGTAAGTCGATCCTAATACTATTTTCTCGTGGTTATGATAACTTTTG
TTTCACTCGCAGTGCCACAGGTATCCCTTATAGAGAGTGGGCAGC
Found at i:87310 original size:51 final size:51
Alignment explanation
Indices: 87234--87391 Score: 270
Period size: 51 Copynumber: 3.2 Consensus size: 51
87224 AACGGATGCG
87234 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
87285 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
**
87336 CGTCTAACGCGCAACGGCTTT--CGC--TAACGCTCAGTCCGTTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
87383 CGTCTAACG
1 CGTCTAACG
87392 GCTTTCGCGC
Statistics
Matches: 105, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
47 30 0.29
49 3 0.03
51 72 0.69
ACGTcount: A:0.12, C:0.32, G:0.26, T:0.30
Consensus pattern (51 bp):
CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
Left flanking sequence: Indices 86734 -- 87233
GAGCTGTAGTGATATCTACATCAACGCTGACTGAAGCGAAGTGGCCCATCGATCGATTCCTACTT
TTTAAATAGATTGCAACGGGTCGACCTACTGCCTTAGCCATGGTTAAGAGCTCCCATTTAGTCCT
TGCCGATTTTTGTGCCCCAGATAGAGGAATCTGATCCATACCAGGGCGTGGTTCATCCTCTGGTT
TTAGGGTGAAAATCTGGAGACCACTTGGTGAGTCTCATCAGTTGGCCTTCAAATAACCACGGACC
GCCTTTCCAGATTCTAACCATATCATTTTCGTTTGAGAGACGAATCGCAACAACCCCAAAAGATG
GTTTATTCCAGTCACCTTAAGGGTGAAAGAGCTCTTCTGCCGGAACCTGGACTTCTTCCTTTTTT
CTCGCTCTGGCATTAGTAGCTCTGCCATTCCTGTTGCCTTTCCATCTTATCTTTCCTACCTCCTC
TCCCAGCAAGAGCAAGAAAACGGATGCAGCAAGAAAACGGATGCG
Right flanking sequence: Indices 87392 -- 87891
GCTTTCGCGCGTTTGCGCTCGGGCCGGTGCTTGTTCCTCTAGCTTAAAATCCCTTCATTATACGC
ATTGTTGTTCCATCTCTTTTTCTTTTCTTGGAAAGAAGTAGATCTCACTGCTTAGCGAGTGGAGA
CACTCGGATTATGCTGGTGCCTTGGGAATGCTGACTTGAGTATGCTAGGATTGGAAGCTAATTCA
ACTAGGACCTCTTGTCTTTCTTTTCCTTAAGGATTGAATTTCTTAACGCGATTCAGTAAGTCGAT
CCTAATACTATTTTCTCGTGGTTATGATAACTTTTGTTTCACTCGCAGTGCCACAGGTATCCCTT
ATAGAGAGTGGGCAGCCTTTATTGGGAAATTACACAATTGCAATGCTGATGTTATGACTCGGAAC
GGAAGGCTTTTTTGGAGATCTTTTTACAGGGTTCTCTTCGTATTACACATGTCTCACGAGTGAAG
CTACGAAAGCCCCTAAAAAAGAGTCGATTCCAGCTTGGATTAAGT
Found at i:87389 original size:27 final size:27
Alignment explanation
Indices: 87316--87391 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 27
87306 CGCGCGTTTG
87316 CGCTCAGTCCGTTGCTTGTTCGTCTAA
1 CGCTCAGTCCGTTGCTTGTTCGTCTAA
* *
87343 CGCGCA--ACG--GC-T-TTCG-CTAA
1 CGCTCAGTCCGTTGCTTGTTCGTCTAA
87363 CGCTCAGTCCGTTGCTTGTTCGTCTAA
1 CGCTCAGTCCGTTGCTTGTTCGTCTAA
87390 CG
1 CG
87392 GCTTTCGCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 9 0.24
21 4 0.11
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 4 0.11
27 11 0.29
ACGTcount: A:0.13, C:0.32, G:0.24, T:0.32
Consensus pattern (27 bp):
CGCTCAGTCCGTTGCTTGTTCGTCTAA
Left flanking sequence: Indices 86816 -- 87315
GGGTCGACCTACTGCCTTAGCCATGGTTAAGAGCTCCCATTTAGTCCTTGCCGATTTTTGTGCCC
CAGATAGAGGAATCTGATCCATACCAGGGCGTGGTTCATCCTCTGGTTTTAGGGTGAAAATCTGG
AGACCACTTGGTGAGTCTCATCAGTTGGCCTTCAAATAACCACGGACCGCCTTTCCAGATTCTAA
CCATATCATTTTCGTTTGAGAGACGAATCGCAACAACCCCAAAAGATGGTTTATTCCAGTCACCT
TAAGGGTGAAAGAGCTCTTCTGCCGGAACCTGGACTTCTTCCTTTTTTCTCGCTCTGGCATTAGT
AGCTCTGCCATTCCTGTTGCCTTTCCATCTTATCTTTCCTACCTCCTCTCCCAGCAAGAGCAAGA
AAACGGATGCAGCAAGAAAACGGATGCGCGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCA
GTCCGTTGCTTGTTCGTCTAACGCGCAACGGCTTTCGCGCGTTTG
Right flanking sequence: Indices 87392 -- 87891
GCTTTCGCGCGTTTGCGCTCGGGCCGGTGCTTGTTCCTCTAGCTTAAAATCCCTTCATTATACGC
ATTGTTGTTCCATCTCTTTTTCTTTTCTTGGAAAGAAGTAGATCTCACTGCTTAGCGAGTGGAGA
CACTCGGATTATGCTGGTGCCTTGGGAATGCTGACTTGAGTATGCTAGGATTGGAAGCTAATTCA
ACTAGGACCTCTTGTCTTTCTTTTCCTTAAGGATTGAATTTCTTAACGCGATTCAGTAAGTCGAT
CCTAATACTATTTTCTCGTGGTTATGATAACTTTTGTTTCACTCGCAGTGCCACAGGTATCCCTT
ATAGAGAGTGGGCAGCCTTTATTGGGAAATTACACAATTGCAATGCTGATGTTATGACTCGGAAC
GGAAGGCTTTTTTGGAGATCTTTTTACAGGGTTCTCTTCGTATTACACATGTCTCACGAGTGAAG
CTACGAAAGCCCCTAAAAAAGAGTCGATTCCAGCTTGGATTAAGT
Found at i:102090 original size:22 final size:24
Alignment explanation
Indices: 102047--102091 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
102037 ATCATCTACC
* *
102047 CTCTCGCTTTGCTCGAGCTGCTAT
1 CTCTCGCTTAGCTCAAGCTGCTAT
102071 CTCTC-CTTAGCTCAAG-TGCTA
1 CTCTCGCTTAGCTCAAGCTGCTA
102092 AGCGTCTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (24 bp):
CTCTCGCTTAGCTCAAGCTGCTAT
Left flanking sequence: Indices 101547 -- 102046
AGCTCAGACTGCTACAAAGGCTGGTAGAACAATTGGTATGAGGAAAAAAAGAAGGAGGAGACTTG
ATCTATCGATCCAAGGACTGAAAAGGACAATTTCCTCAATTCAAACTCAGGGTTTAGGTTCAGAT
AGCGGGAAATCTCAAATCAGCTCATGCATAACCACAGATACCTTCTGATTGAAAAATCATATCTA
GAGCCAAAGTTAGAGCGGACTACCCCGAAAAGAACCCTACTTTCATTTACTCTTTTGACTTTAAA
CTGGGCTTTTCCCTTTTATTGAAGGATCCCCACGTGTTAAGGAAAGTCAAGGCTTTCACAAAGTC
ACTTGCTTAACTCATATCTTTCTATGATGTATTTTCCCTTGCAGCAATTGGATGGAAGACTTCAT
AGATAGGCTAGAAAAGAGGGCTAGCTTTCTTCGGCGAATTGCTTTCATTTATTCTGATATCTATC
TTCTACTCTTTCCTTATCCTTAATTGAACACTAAGATCATCTACC
Right flanking sequence: Indices 102092 -- 102591
AGCGTCTTCTAAGCTTAGTTGAAAGGCTAAGGTTACGTAGTAGCTCTCGCTATCGGTACAGTAAC
TTCATACCTCTCCTTGGCAGTCGAGTCGTTAAGCAGCGATAGAAGAAACTTCCTTCGTTTACGAG
GACAAAAGGCCGCTTTGGAATATAGTAGCAAATATAGTAGCAAGCCTAAGCTTTTGAATCGAACG
ATTGCATAAAGAAAGATTCTTTCATTTCTTATTTAACCGTAGGACAGTGAATCAGTTCATTTCAA
TTTATCAATTCACTAGACAGCTAGACAGAAGGATTACTTCCTCTTAATTCACCGGAGGAGAGAGA
AGTGACCAATGGGTATTGGGCACGAACGATAAGAAAGTCAAGTGTGAAGTTCAGTCTACCGGAGC
TCATCTATTCTCTTAGTAAACGATATTCATTTCAATAGGAAGAGAGAAAGTGAGACAAGAATTCT
CATAGATAAGAGGGATTCGTTCTGCCCTTTGCTTTTCTAGTAAAG
Found at i:102257 original size:12 final size:12
Alignment explanation
Indices: 102240--102264 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102230 GCCGCTTTGG
102240 AATATAGTAGCA
1 AATATAGTAGCA
102252 AATATAGTAGCA
1 AATATAGTAGCA
102264 A
1 A
102265 GCCTAAGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (12 bp):
AATATAGTAGCA
Left flanking sequence: Indices 101740 -- 102239
TAGAGCCAAAGTTAGAGCGGACTACCCCGAAAAGAACCCTACTTTCATTTACTCTTTTGACTTTA
AACTGGGCTTTTCCCTTTTATTGAAGGATCCCCACGTGTTAAGGAAAGTCAAGGCTTTCACAAAG
TCACTTGCTTAACTCATATCTTTCTATGATGTATTTTCCCTTGCAGCAATTGGATGGAAGACTTC
ATAGATAGGCTAGAAAAGAGGGCTAGCTTTCTTCGGCGAATTGCTTTCATTTATTCTGATATCTA
TCTTCTACTCTTTCCTTATCCTTAATTGAACACTAAGATCATCTACCCTCTCGCTTTGCTCGAGC
TGCTATCTCTCCTTAGCTCAAGTGCTAAGCGTCTTCTAAGCTTAGTTGAAAGGCTAAGGTTACGT
AGTAGCTCTCGCTATCGGTACAGTAACTTCATACCTCTCCTTGGCAGTCGAGTCGTTAAGCAGCG
ATAGAAGAAACTTCCTTCGTTTACGAGGACAAAAGGCCGCTTTGG
Right flanking sequence: Indices 102265 -- 102764
GCCTAAGCTTTTGAATCGAACGATTGCATAAAGAAAGATTCTTTCATTTCTTATTTAACCGTAGG
ACAGTGAATCAGTTCATTTCAATTTATCAATTCACTAGACAGCTAGACAGAAGGATTACTTCCTC
TTAATTCACCGGAGGAGAGAGAAGTGACCAATGGGTATTGGGCACGAACGATAAGAAAGTCAAGT
GTGAAGTTCAGTCTACCGGAGCTCATCTATTCTCTTAGTAAACGATATTCATTTCAATAGGAAGA
GAGAAAGTGAGACAAGAATTCTCATAGATAAGAGGGATTCGTTCTGCCCTTTGCTTTTCTAGTAA
AGTGAGGTAGTCCTCTCCCAGGAGCTTAGCCTTGTGTGACCTGAAATGGGTCGGCGACAGCCGGG
ATACCTGAGGGCATAAATTCCAATCTGACTTCAGAAGCAAACAAAAGTAGAAACTTAAACTCTTC
TTCTTTCAGTAGGGGGGGATCCATGTTCCAGTAATTGGTGTAAAA
Found at i:113933 original size:12 final size:12
Alignment explanation
Indices: 113916--113940 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
113906 CGATATTGCT
113916 GTTCACTCACGC
1 GTTCACTCACGC
113928 GTTCACTCACGC
1 GTTCACTCACGC
113940 G
1 G
113941 ATATTGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.40, G:0.20, T:0.24
Consensus pattern (12 bp):
GTTCACTCACGC
Left flanking sequence: Indices 113416 -- 113915
CCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCC
TGATCCACGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCC
CGTTCGCTCCCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTG
GCGTTCCTTCGTAGATCTGCGGATTTCACCCCTACCACACGAAATTCCACTCTCCTCTGTCTCAC
TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCA
CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGC
TGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAG
AGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCT
Right flanking sequence: Indices 113941 -- 114440
ATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC
GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGG
TCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTTAGCTTTC
TTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCATTACGCACCCGTTCGCCACTTTGTT
TTCAACTGTTCCCACCTCCTGGGCGAGACAAGCTACCTTTAGCTAGGAGCCTCTTTTCCTTCTGC
CCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGC
CAGGATCAAACTCTGATTTTGACTATGATTGTTCCAAACAGTGGTAGAACCTGGTGAACCGGGCG
TAGTGACTACTTCCTATCCTCTCCAACCAGTCGAGCTCAATCAAC
Found at i:121480 original size:51 final size:49
Alignment explanation
Indices: 121359--121492 Score: 159
Period size: 51 Copynumber: 2.8 Consensus size: 49
121349 TTGCTCGAGC
**
121359 AAACAAGCAACGGACTGAGCG-TTA---GCGAAAGCCGGAGCACGTTAG
1 AAACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGGAGCACGTTAG
* * * * *
121404 AAACAAGCACCGGCCCGAGCGCAAACGCGCGAAAGCCGGTGCGCGTTAG
1 AAACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGGAGCACGTTAG
121453 ACGAACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCG
1 A--AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCG
121493 TTAGACGCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 18 0.25
46 1 0.01
49 20 0.27
51 34 0.47
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.07
Consensus pattern (49 bp):
AAACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGGAGCACGTTAG
Left flanking sequence: Indices 120859 -- 121358
TTTCTTGCGGAAAGAAAGTCTCCCTGCGGGGACAGTTACACTTATTAGTATAGAAGGAGACCTCG
CCCTTTCAGTCGCACTTCCTCTCCCTATGCTATTCAAAAGCTGTAGCTTGCTATTCTCTTTCCTT
AGTCAGTTGCTAGTCAGTCTCAGTCTTAGTAGTCAGTAAATCCACTCCCAATAGGGAGAGGAGTG
AACTCGCAGCTACAGCTAAAGGTAGAAAGATTTAGATTTGTACAAGTCACAGGAGTGAATATCAA
TACTAGTAGCCCAGAAGAAGGATATAAAGAAAACGGATCAGTATTCGCTCTAGTGAAGTGAGCTT
AAGGTATTGGTCACGTCACGAAGGCTAATAATACAAATTCCATAGAATCAGTTCATTTCCTTCTA
TTTAGGGCCTTAGAATGCCTTTTCTAGACCGAATGCTTTCGATATAGGGAGAGGTACTTCGTACC
CTCTCCTTTCAGTCGAGAACTTCATGCCTCTCGCTTTGCTCGAGC
Right flanking sequence: Indices 121493 -- 121992
TTAGACGCACATCCGTTTTCTTGCTGGGAGAGGTGTCTCAATCAAACTTTGGGTAGGCTGGGGGA
ACGTTCACCAAACGAGACACGGAGGCAGGATTATTCAGCTTTTCCTTTCTATCAGAATCAAAGAC
GGAGATCCTTCTCTTTTAAGGAGAGATTTCTATTAAAGATTAAAGAACTAGAATCTAACTCTAGT
TATAGAATAATAGTTAGAGTTACTCACTTAAGGAAGTGGGGAAGATGGGCTCGAGATAACACTAT
TGTGAAAAGGCCTTTAGTCTTTAGTTGCGAACCTGTAGGGATCCCATAGTAATCACCCGGGTTGT
TAACAGGCGATGGAAGTTCAGTCTCTGTAGGCGGCGAAGCAAATAGCAAGCGAGGAAGGGAAATC
AAACAAAACTTCTTTTAGAGCGCCAAGTTGCTTACAAATCAACTTCTTCCTTTTCCTATCTGGCT
AGTTACAGGCTTACAACACCTTGTAATGACTTTACTTACCTACTC
Found at i:160732 original size:44 final size:44
Alignment explanation
Indices: 160682--160767 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
160672 GCTAACGCGC
160682 AACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCT
1 AACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCT
160726 AACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGT
1 AACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGT
160768 TCGAGCCCCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.07, C:0.29, G:0.28, T:0.36
Consensus pattern (44 bp):
AACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCT
Left flanking sequence: Indices 160182 -- 160681
CAAGCTCAAACCATTTGAAACGGAATTGCTACTGTATTCTTGTTATGGATAGAGTGGTATTCTCC
GCCCCTGTCAAATAAAGTAGAGGGAGAGAACTGGAAGAGAGAAGGAAAAAGAGCAAAGGATTTAC
AAGTCTAATGGGAGAGGAATGGCTGACACGTTGACTGCCTTCGAGACTATAAAATCTAACCCAAG
CGGTCTAAGCCCCGGGACGGACCCCAACCGAAATAAAGGCGCTAGACGGACTAACGGCAAGCGAG
ATAAAGAAAGCAGCTGGCCCTATGTGTAAAACCTTGCCGCGGGAGAGTCTTTCTCCAATGAGAAT
AAAGAAAGTTTTTGGGCAAGACAAGAAAGGAACTCGCCCTTTGCTTTGACACCACACCAAGGGAT
AAGAGCTGATTGCTGGTTGGTGAAGGGAGAGAGAAGGTTCTCGAACCGGGTTCCGACCGAATAGA
GCGCCTTCGCCCCAGCAAGAAAACGGATGCGCGAAGCTAACGCGC
Right flanking sequence: Indices 160768 -- 161267
TCGAGCCCCCTGAAACATTAAGTCGTTCAGTCGAACAGCGTAACGAGTCTAAGGGCGCTTGAAAG
GAATGGACGGGCGTAGGCTTAATAGTGAACGCGGACCCCCCTGCTTATAGATATGAGATCAATGA
CTTAAAAGACAGATGCCGAGAGAAACTGTTAGACTTCTTTATTGCGTTGCGAAGAGAGATTGAAG
ACGAAGATTTTCTGACGCAGTGCGGGCACTGGATGGAATAGAAAGAGAATATAACAACCCACCGG
AAGGGCATACCTCAGGAGCACCAATCTCCCCCGGCAAACATCTATCTGCACGAAGCCGACCTATG
GGTAGTGAAATATGAAAAAAAAAAAGATATGCTTTGGGAGTGTGAGATACGCGAACGGGGAGTAC
GCAGCCGAAGAACCGCAGGGGCTTCCAGCAGTGATAGCTGAACTAACCAGATGGGCCGCCCAAAA
CCTGGAGCTGACATTTAAATAAATCGGAAATCTACGTCGGATCCC
Found at i:213148 original size:29 final size:28
Alignment explanation
Indices: 213061--213154 Score: 79
Period size: 28 Copynumber: 3.3 Consensus size: 28
213051 ACAAGCAATC
*
213061 TCATACCTCTCCTTGTCAGTCGAGC-ACT
1 TCATACCTCTCCTT-TCAGTCGAGCGTCT
* *
213089 TCATGCCTCTCGC-TTC-GCTCGAGTGAT-T
1 TCATACCTCTC-CTTTCAG-TCGAGCG-TCT
213117 TCATACCTCTCCTTATCAGTCGAGCGTCT
1 TCATACCTCTCCTT-TCAGTCGAGCGTCT
*
213146 TCAAACCTC
1 TCATACCTC
213155 CTGATGTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 24 0.46
29 18 0.35
30 1 0.02
ACGTcount: A:0.17, C:0.35, G:0.15, T:0.33
Consensus pattern (28 bp):
TCATACCTCTCCTTTCAGTCGAGCGTCT
Left flanking sequence: Indices 212561 -- 213060
GCCGATCCGGATTATCATTGTCAATTAGAAAGGGAAGCCCAGAAGACCCCTCCGGGGCAGAAGGT
TGATTGAACCCTCCTGACATCCCTCCCGGCGCATCTGGGAGAAACTGAGAAACCGCACGAAAAAG
CTCGTCCATCCAAAGACACTCAATAAAAACGAAGGATTTATACAAAAAAAAAAGAAAGACCATTT
CGAAATGCAGTAAAAGTCTCTTTGGAATGTTCTTTACCAGTGGGAACGAGTGTAGCAAAAAAAAC
AAGAAAAAATCTATTAAGAAAACCCAAAAATTCAGACCAAGTAAGATAACAGAAACTAGCAGACT
TACCGCTAAACAGATACAAATAGGTGCAAATTCTGACATTACCACAACCCACTTGGTTCTTTCGT
TTCGCTCCTTTCCTTTCTCGCGGAGCGGCATACCGGAAAAAAAAAGCTTCGACCCGATAACTTCA
GCGTCCTTCAAACCTAGTGACACTGACGAACTCTAACAAGCAATC
Right flanking sequence: Indices 213155 -- 213654
CTGATGTGAATAAGGTCTTAGTATGTATTGGCATTCTGGGCGGGTCGCAATAAGTCGCTGGTCGA
AGGTTTAGACCAATTGCAATTCATCACCATCTTGCCCGCTTCCAATTGATGACTGGCTATTATAT
AAGTGTTGACCTAAGCCCCTGCCTGTGCTGGGGCTCGGCTCCCGAACCGTACGTGAGCTGCCTCG
TACGGCTCTTCCTAAGAACTTGAAGCCCTCTCTCTCTAAATACAAATTCAAAAAAATGCATTTAC
ACAAAAAAAAAGCCTTCGCCTCCTATTCAACGGGGCTATTAGAGAAGCAGCTTCGTTCCTTGACT
TCTTTGCTCAGTCAAGCTTCCTTGTTCCTTAGTGTAGTCTCGGTCCATAGTTTAAGACTCTTTTC
CTTATAGCCTAGTCTATATCCACAGCTGACGTGACTCCGTACCGACGCCTTTCCCTTTGTAGACG
GCTAAGTGACTTCGTAACCTTAACGTACTTATTTTCGTACTTTCT
Found at i:225524 original size:20 final size:20
Alignment explanation
Indices: 225499--225573 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 20
225489 AAACTCCATA
225499 GCTAACGCGCAACGGCTTTC
1 GCTAACGCGCAACGGCTTTC
* *
225519 GCTAACGCTCAGTCCGTTGCTTGTTC
1 GCTAACGCGCA--ACG--GC-T-TTC
225545 GTCTAACGCGCAACGGCTTTC
1 G-CTAACGCGCAACGGCTTTC
225566 GCTAACGC
1 GCTAACGC
225574 TCAGTCCGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
20 17 0.39
21 4 0.09
22 3 0.07
23 2 0.05
24 2 0.05
25 3 0.07
26 4 0.09
27 9 0.20
ACGTcount: A:0.17, C:0.33, G:0.24, T:0.25
Consensus pattern (20 bp):
GCTAACGCGCAACGGCTTTC
Left flanking sequence: Indices 224999 -- 225498
ACAGCCGCTCCTCTACAACTACCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGTA
GATAGAAGGACGAAACCAACCAACCCACTTGTCCTGATCGGAACGATTGAAGAAAGAAAGAGAAT
GGTGGCCCCTTTCGCCCAGGGGGCATCGTCGGAGAACAATGTCGGGGACAGGGTGAGAACCTTCC
GTTGGTTACGCCCTTTCAGTGTTGGTTCTTCCATATTTAGATATGGCCAGATAGAGATCTATATC
TTTCTATCGATAGATATCAAGATATATTGAGAAATGGATATTGATCTGGTTTCAAGATCTATGAA
CAAGATAGATCCCTAAATATCCATTTGAAAAAAGAGATGAATAGATAGGGCGGAGCCAGCTGAAG
GAAGGGCGCTAACGCGCCCCTGCAATCTTTCTAAAGCAAGAAGCGAGAAACTTTACTTTGAGAAA
TTAACTCAGCAATCTTCCCTCCTCTCCCAGCAATCAAACTCCATA
Right flanking sequence: Indices 225574 -- 226073
TCAGTCCGTTGCTTGTTCGTTCGAGTCCCCTGAAACATTAAGTCGTTCAGTCGAACAGCGTAACG
AGTCTAAGGTTACAGAAGCGTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAGCAGA
GAGCTTACCATTTTTTTTTCTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGGGAGAACT
TGCTGCTTACTTGCTATATCCCCGCGTTCTTGCACGGCTCGTTCTTCGAGCCCTGCTTCTCCCTT
CCCCCTCTCCCCGTTCGTTCTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGG
CATCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGAT
CGGATCTGTCAAGAACGAGCTGACGACTACAGGGGAAGCGGCTGATTGCAGTCCCTGAGCCCAGC
CCGGGCGGGAGGAATGCATGGTTCCCTGGCGCTTCATGGGACGGG
Found at i:225550 original size:27 final size:26
Alignment explanation
Indices: 225516--225592 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 26
225506 CGCAACGGCT
225516 TTCGCTAACGCTCAGTCCGTTGCTTG
1 TTCGCTAACGCTCAGTCCGTTGCTTG
* *
225542 TTCGTCTAACGCGCA--ACG--GC-T-
1 TTCG-CTAACGCTCAGTCCGTTGCTTG
225563 TTCGCTAACGCTCAGTCCGTTGCTTG
1 TTCGCTAACGCTCAGTCCGTTGCTTG
225589 TTCG
1 TTCG
225593 TTCGAGTCCC
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
20 9 0.22
21 4 0.10
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 8 0.20
27 9 0.22
ACGTcount: A:0.13, C:0.31, G:0.23, T:0.32
Consensus pattern (26 bp):
TTCGCTAACGCTCAGTCCGTTGCTTG
Left flanking sequence: Indices 225016 -- 225515
ACTACCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGTAGATAGAAGGACGAAACC
AACCAACCCACTTGTCCTGATCGGAACGATTGAAGAAAGAAAGAGAATGGTGGCCCCTTTCGCCC
AGGGGGCATCGTCGGAGAACAATGTCGGGGACAGGGTGAGAACCTTCCGTTGGTTACGCCCTTTC
AGTGTTGGTTCTTCCATATTTAGATATGGCCAGATAGAGATCTATATCTTTCTATCGATAGATAT
CAAGATATATTGAGAAATGGATATTGATCTGGTTTCAAGATCTATGAACAAGATAGATCCCTAAA
TATCCATTTGAAAAAAGAGATGAATAGATAGGGCGGAGCCAGCTGAAGGAAGGGCGCTAACGCGC
CCCTGCAATCTTTCTAAAGCAAGAAGCGAGAAACTTTACTTTGAGAAATTAACTCAGCAATCTTC
CCTCCTCTCCCAGCAATCAAACTCCATAGCTAACGCGCAACGGCT
Right flanking sequence: Indices 225593 -- 226092
TTCGAGTCCCCTGAAACATTAAGTCGTTCAGTCGAACAGCGTAACGAGTCTAAGGTTACAGAAGC
GTTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAGCAGAGAGCTTACCATTTTTTTTT
CTATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGGGAGAACTTGCTGCTTACTTGCTATAT
CCCCGCGTTCTTGCACGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCGTT
CTACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGG
CATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGAG
CTGACGACTACAGGGGAAGCGGCTGATTGCAGTCCCTGAGCCCAGCCCGGGCGGGAGGAATGCAT
GGTTCCCTGGCGCTTCATGGGACGGGCGTTCGCTGTCCCCCTCCC
Found at i:225569 original size:47 final size:47
Alignment explanation
Indices: 225500--225593 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
225490 AACTCCATAG
225500 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
1 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
225547 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
1 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
225594 TCGAGTCCCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.15, C:0.32, G:0.23, T:0.30
Consensus pattern (47 bp):
CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
Left flanking sequence: Indices 225000 -- 225499
CAGCCGCTCCTCTACAACTACCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGTAG
ATAGAAGGACGAAACCAACCAACCCACTTGTCCTGATCGGAACGATTGAAGAAAGAAAGAGAATG
GTGGCCCCTTTCGCCCAGGGGGCATCGTCGGAGAACAATGTCGGGGACAGGGTGAGAACCTTCCG
TTGGTTACGCCCTTTCAGTGTTGGTTCTTCCATATTTAGATATGGCCAGATAGAGATCTATATCT
TTCTATCGATAGATATCAAGATATATTGAGAAATGGATATTGATCTGGTTTCAAGATCTATGAAC
AAGATAGATCCCTAAATATCCATTTGAAAAAAGAGATGAATAGATAGGGCGGAGCCAGCTGAAGG
AAGGGCGCTAACGCGCCCCTGCAATCTTTCTAAAGCAAGAAGCGAGAAACTTTACTTTGAGAAAT
TAACTCAGCAATCTTCCCTCCTCTCCCAGCAATCAAACTCCATAG
Right flanking sequence: Indices 225594 -- 226093
TCGAGTCCCCTGAAACATTAAGTCGTTCAGTCGAACAGCGTAACGAGTCTAAGGTTACAGAAGCG
TTCGCCAACTTTGATAGGTATAGCATTGCAAGCAAATAGAGCAGAGAGCTTACCATTTTTTTTTC
TATTAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGGGAGAACTTGCTGCTTACTTGCTATATC
CCCGCGTTCTTGCACGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCGTTC
TACCGTCCAAAACAAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGC
ATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGAGC
TGACGACTACAGGGGAAGCGGCTGATTGCAGTCCCTGAGCCCAGCCCGGGCGGGAGGAATGCATG
GTTCCCTGGCGCTTCATGGGACGGGCGTTCGCTGTCCCCCTCCCT
Found at i:319303 original size:20 final size:21
Alignment explanation
Indices: 319238--319309 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 21
319228 CGCAAACGCG
319238 CGAAAGCCGTTGCGCGTTAGA
1 CGAAAGCCGTTGCGCGTTAGA
* *
319259 CGAACAAGCAACGGACTGAGCGTTAG-
1 CG-A-AAGC--C-G-TTGCGCGTTAGA
319285 CGAAAGCCGTTGCGCGTTAGA
1 CGAAAGCCGTTGCGCGTTAGA
319306 CGAA
1 CGAA
319310 CAAGCAACGG
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
20 9 0.22
21 7 0.17
22 2 0.05
23 4 0.10
24 4 0.10
25 2 0.05
26 3 0.08
27 9 0.22
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.15
Consensus pattern (21 bp):
CGAAAGCCGTTGCGCGTTAGA
Left flanking sequence: Indices 318738 -- 319237
TCACACTTGTTTTTTGCGGATGATTTCGTCTTGTTTGCGGAGGCTACGTTAGATCAAGTGGCTGT
AGTTCAACGCATTCTTCAAGAGTTTTGTGGTGCCTCTGGTCATAAAGAAAAAGTTAATGTTATAA
AATCAAAATGGTTTTGTTCTTGCAATGTAATGTTAAGCCTCAGTTGGCAAGTTTGTATTGCTAGC
ACTGAGACATACTAGACTAATTGGGAAGTCTTAGCAAGCAAGTCGATAGATAGTAATAATCGATT
CGATCTGATCTTCTTCTTCTTACTTGATGTCAAGAAAGTGGAAATGAACTCACTTATTGGCTAAC
GTATAAAACAAAAAACCAGATGCTTCGCGACCAAACACAAAAAAAAGCTTTCCTTTCCCAGCAAG
AAAACAAAACTAAAGCGCAAACGCGCCATTAGCCCTCGAGCTGACGCTCGAGCGACTTCGTACCT
CTCGCTTTGCTCGAGCAAACAAGCACCGGCCCGAGCGCAAACGCG
Right flanking sequence: Indices 319310 -- 319809
CAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACGAACAAGCAACGGACTG
AGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACGCGCATCCGTTTTCTTGCTGGGAGAGGAGGG
AAGATTGCTGGGTTTAGGGCTTTTTCAGCTTGCTGCTCGTTTTCTCGCTTCCGATAGGCGAAGGG
ATTGGATTTCACCTATGATCAGATCAGTGGGCAACCATAGTTTACTTTTTTCGTGGTGTTGTTGA
AAGCTAATTTGTAAGTAGGCCTCGCTTTTCGGAGCTGCTCCCAGCTCACACTATGGTGGAGGAGG
TGCCGTGAAGATCTAGGAGTGTGAGCAGTACGAGCTGAAAGGCTCCCATACTGTTTGGAGGGCAG
GGGGGCATAGATGCCAAACAAAACCTGACCCCTATCTATTGTCGTAGAAGCTGTTCCTAGTAAAG
ATTATGGTTCTTGGGTATCCAATCAATTAATCCCACAAACCGGGG
Found at i:319360 original size:51 final size:51
Alignment explanation
Indices: 319210--319409 Score: 327
Period size: 51 Copynumber: 4.0 Consensus size: 51
319200 TGCTCGAGCA
* * *
319210 AACAAGCACCGGCCCGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
**
319261 AACAAGCAACGGACTGAGCG-TTA---GCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
319308 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
319359 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
319410 CGCATCCGTT
Statistics
Matches: 138, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
47 44 0.32
48 1 0.01
50 1 0.01
51 92 0.67
ACGTcount: A:0.30, C:0.28, G:0.32, T:0.10
Consensus pattern (51 bp):
AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
Left flanking sequence: Indices 318710 -- 319209
GGATCCCTTTTCGGGTGTGTCGGGGGTATCACACTTGTTTTTTGCGGATGATTTCGTCTTGTTTG
CGGAGGCTACGTTAGATCAAGTGGCTGTAGTTCAACGCATTCTTCAAGAGTTTTGTGGTGCCTCT
GGTCATAAAGAAAAAGTTAATGTTATAAAATCAAAATGGTTTTGTTCTTGCAATGTAATGTTAAG
CCTCAGTTGGCAAGTTTGTATTGCTAGCACTGAGACATACTAGACTAATTGGGAAGTCTTAGCAA
GCAAGTCGATAGATAGTAATAATCGATTCGATCTGATCTTCTTCTTCTTACTTGATGTCAAGAAA
GTGGAAATGAACTCACTTATTGGCTAACGTATAAAACAAAAAACCAGATGCTTCGCGACCAAACA
CAAAAAAAAGCTTTCCTTTCCCAGCAAGAAAACAAAACTAAAGCGCAAACGCGCCATTAGCCCTC
GAGCTGACGCTCGAGCGACTTCGTACCTCTCGCTTTGCTCGAGCA
Right flanking sequence: Indices 319410 -- 319909
CGCATCCGTTTTCTTGCTGGGAGAGGAGGGAAGATTGCTGGGTTTAGGGCTTTTTCAGCTTGCTG
CTCGTTTTCTCGCTTCCGATAGGCGAAGGGATTGGATTTCACCTATGATCAGATCAGTGGGCAAC
CATAGTTTACTTTTTTCGTGGTGTTGTTGAAAGCTAATTTGTAAGTAGGCCTCGCTTTTCGGAGC
TGCTCCCAGCTCACACTATGGTGGAGGAGGTGCCGTGAAGATCTAGGAGTGTGAGCAGTACGAGC
TGAAAGGCTCCCATACTGTTTGGAGGGCAGGGGGGCATAGATGCCAAACAAAACCTGACCCCTAT
CTATTGTCGTAGAAGCTGTTCCTAGTAAAGATTATGGTTCTTGGGTATCCAATCAATTAATCCCA
CAAACCGGGGAAGCTTAAGCGGAAATGAAAGAGTAGGGTGAGGGATAAGGGGGGAAGCCACTAAA
TGGAAGGCTTCGCTCGCTCGCTCTAACGCTCGTTTAGTAGACAGC
Found at i:382816 original size:51 final size:51
Alignment explanation
Indices: 382740--382892 Score: 279
Period size: 51 Copynumber: 3.0 Consensus size: 51
382730 TGCTCGAGCA
* * *
382740 AACAAGCACCGGCCCGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
382791 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
382842 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
1 AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
382893 CGCATCCGTT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 99 1.00
ACGTcount: A:0.30, C:0.29, G:0.31, T:0.09
Consensus pattern (51 bp):
AACAAGCAACGGACTGAGCGCAAACGCGCGAAAGCCGTTGCGCGTTAGACG
Left flanking sequence: Indices 382240 -- 382739
GATCCACCCGATCGATGAACACTCGAACCGAACTCGCCCATCCTTTTGGGCACAGGGACGCGAGA
ACCAATCCGAGTAATCAACCGCTTTTTTTATAAAATCTGCCTCCAGCAAGCCACCCCCGCCAAAA
AGCCGTATAGTGCAGGAGCGCTCACATTTTTTGGCTTCCTCTTTCACTTGAATTTCCAAATCCGG
CTCGCTCCCGGCTACCTGTCCTTTGGACCCAAAGCCCGCTTAGAAGTGGATTCGAACCACTGACA
CAAGGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTT
TCTTCATCGAATAGCGCCCTACCTTACCACTTTACTAGTAAGGGAAAAGCCCTTTACTAATAACA
AGAAAGAAAGGTTTGAAGACGCTCGACCTAACAAGCAACGGACTGAGCTAGCGCCATTAGCCCTC
GAGCTGACGCTCGAGCGACTTCGTACCTCTCGCTTTGCTCGAGCA
Right flanking sequence: Indices 382893 -- 383392
CGCATCCGTTTTCTTGCTGGGAGAGGAGCGGTAGGAGCAGCTCGACGTAAGGAGAGGGCTTGAAC
GCTTGTTCGTCAAGCTTTCGAGCAGCTCTTTCAACTGCCTACATCTCCTCTCCTTATCCGTCGAG
GTACTGCGCACCCTCTCACTTCGTTCGAGAACTTCATGCCTCTCCCAACATGCTCAAGAACCGAG
AGCCGCCCAGGGACTGGACGGCCGGAGGGAGCTTGCTTATAGAAAGAAGATAGGCCGGTCAAACA
AAAACAACGCGCAACGGGCTCTCCGCTCCTAGTAACAAAGTGGTGCTATTCTGTCCTCCGGGGGA
CTCCACCAAGAGGTTCTTTCTCTCACGTAATTTCGCCCGCCCGTTCCACTTCCGTGCCGGAGGAA
ATGGGATTCGAACCCATGATACAATCTTCTTGTATGTCGATTTAGCAAACCAATGCCTTAAGCCA
CTCAGCCATACCTCCAAGTTGTTGATTGGAATTTGATGTGCGGTT
Found at i:494955 original size:15 final size:15
Alignment explanation
Indices: 494935--494964 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
494925 AGTGCTCATA
494935 TACTACTACCGATAG
1 TACTACTACCGATAG
*
494950 TACTACTACGGATAG
1 TACTACTACCGATAG
494965 GGAATGATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (15 bp):
TACTACTACCGATAG
Left flanking sequence: Indices 494435 -- 494934
TGAACCGGGCGTAGTGTACTACTTCCTATCCTCTCCAACCAGTCGAGTCAACAACCCTCTCGCTT
CGCTCGAGTGATTTCATACCTAAAGCTTAGAAAGAGCTTCCTCTAACAAGCAATCTCATACCTCT
CCTTGTCAGTCGAGAGCTTCACGCCAGATGCTATTGAAATGGAAATTCTAACTGCTGCGCTTACG
CCTTTTGTTCACACCAAGACCCGGACTGCTGCCTCTGACTTTCATCCCTATCGGGAGTGGATTGA
CTGACTACTAAGACAGACTACAATTCAATCTTCCATCACGGAACACTTTCTAGATCTCAATATGC
CATCTCATCACCATTTCTATCTCGATCTTAGCCGATCTCAGGTTGACCGGCTCTCCGGCCTCATT
TCGAGGCACTAATGGAGAGCTCATTGGACCCGTCGCTTTCTCAATCATAGAATACGTCATAGATG
AGACGAATTGATATAGAAATATGCTCAATTGATATAGTGCTCATA
Right flanking sequence: Indices 494965 -- 495464
GGAATGATTCAGGATTCTTATCGTTCGCCCATAACGAGTAGACGAAGGTTTAGTGATCACTTACG
CAATTCGACTGATGCTCTTTTGCGAGATGAGATCACTCTCTCTTTCCTAGTGGAAAGAGAATGCA
CGATAGAGTCAAAAAGGTCTGACTCAATGACAAGCGAAGCGAACTATCTTAATTCACCGGAGGGG
AAAATTACCTCTAACTCAAGCGATAGGACCCAACAAGGCGCGAAAGGTTAAGGTAGTTCAATCTG
CCTTCTCGTTGAAAGCAAGAAAACATGGAAGAAATCCTGAATCTGTTAGTCTTAAAGGGCAATCG
ATAATCCGTATCAGCATAAACTAGGAGATCAAGTAACAACAAAATAGTTGAGTGCTATCGTCAAT
GAGTGAAAGCAATCAAACTCAATAGAAAAATAGCGAAATCAACCCGGTAGCTAAATCCCTTGCCT
ATTTCAAATCTTTAATTCTTTAGTTACAGTCTCGGTATAAGCAAT
Found at i:506653 original size:18 final size:18
Alignment explanation
Indices: 506613--506655 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
506603 AAAGCCCTGC
506613 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
506632 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
506649 CATAGTC
1 CATAGTC
506656 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 506113 -- 506612
CCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGA
GTGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAA
CCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCTTACCACGAGGCGCCCTACGCGACTGGC
GCTTCCAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCCGGGCGGACACTTTTTGTTATCTAAAG
GCGAAGAGTCTTCAGTGGGCGAACACTCGGCCCAGCAGGCGAACATGCCGGGCTCCGGCTCCGCG
CACCTGCTGACACCTTTCGAAGCACTTTCGTTTGTGCGCTTTAGTGTTTTTTTAGTGTCGTTCAG
CGTCACGAATGATCTTTCTCATTTCAGTGCTCGCCTTTGAAATCTTCAGTAGGGGCCTTTAGTCT
TTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTAAAGCCCTGC
Right flanking sequence: Indices 506656 -- 507155
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:519013 original size:29 final size:29
Alignment explanation
Indices: 518971--519033 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
518961 TCAAGAATTC
518971 TACCAAACCTCTTTAAGCCATAAACTGAG
1 TACCAAACCTCTTTAAGCCATAAACTGAG
* *
519000 TACCAAACTTCTTTAAGCCATGAACTGAG
1 TACCAAACCTCTTTAAGCCATAAACTGAG
519029 TACCA
1 TACCA
519034 TTTGATGAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (29 bp):
TACCAAACCTCTTTAAGCCATAAACTGAG
Left flanking sequence: Indices 518471 -- 518970
GATCGGCTTACTCCATTCTTATAGCGGAGAGAGTGGTACCATACTGGCTTTCAAGCGGCTTTCCT
CACTTCAATTCTATCCCGATAGGTAGAGGACTTTACCGAAAAGTATGGGCTGGAAAAATTTCCAG
AGATACTGAATGAAATCAAAAAGAAAGAAGAGAAATTGGGCCATGTTTCCCGAGCCTTCTCTCAG
GCCAGCAGTCTTCTACTTTTAGTCGACTGCTCTATGACGGGCTTCCCTGTATCCTGGGCTCTGCT
CGCTCGTCTACGCTCCGACCCAGAAAGTAATAATTGAAAAATTTCCTTTCAGTCGAGCTACTAGT
AACCTTAGCACAAGTAGTACACTAAGCTCTTCAAACCTTAGCTACGTGAGGGCTGAAGAACGAGT
GAATCTTGTTTTCGGGTTTATGCCCATTGCCGATCATGTGGTAAGTTTCCTCGCTTTCGATTCCC
CATTGGTTGTACGGTTATATCAAGTATACTAAAAATCAAGAATTC
Right flanking sequence: Indices 519034 -- 519533
TTTGATGAGTTACTGAGAACAAAGGGGGGAGGGTTATGGAAAGGATGGTGTAATGACATGACGCG
CACCTTATTCATTTTCATCATCTTTTATTTTACAATAGTATGTTTAGGATCATATGCAGTCTTAC
TAGGCGTATCCTTACTGAGACTCTCATTGTTAGCAATTTTAGACTGGAATTCCATGATTTCCTTC
TCTTTTTTAGCATTATCTTCAATAAGAAGCTTCTTTTGATATGATAGGTAGGGCTGAGGTTCTTA
GTAGCAAGAAATTGCTTATGTTATGAAATAAAGAATATATTGTATTGCGTTAAGGAAATGGGGGC
TTTGGACTCCTTCAAAAAGGAGATCCACGAAAATATCTTGTAAGGTGGATAAGTTGTTGAGATTT
TCGTAGATATGTTGCCCAACATCCTCGATGGTTAATCCTGCGGGCAATTCATATTCTTCCCCATA
ATACTGCTTTAATAGAGCGTAGAGCCGAGAATTTATTTCAAATCT
Found at i:526473 original size:15 final size:15
Alignment explanation
Indices: 526453--526482 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
526443 CCTTTACTAT
526453 ATATCGGTCTTCAGC
1 ATATCGGTCTTCAGC
*
526468 ATATCGGTTTTCAGC
1 ATATCGGTCTTCAGC
526483 TCTATATACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (15 bp):
ATATCGGTCTTCAGC
Left flanking sequence: Indices 525953 -- 526452
GCTCGCATTTTGCATGGTGTTTAGCGAGTCTAGACACCCCTCTAAAAAAGGTTGTACGGCCTCCC
ACAAATCCATTATTTCATTTCTGTTTTTACGTACAATGAATGAGCACTGTTGTAAACTATCCGCT
TCAAAAGGATAGTTGGTTATAAGAAAACGAATAAGATCAAGAAGGACATCATTAGGGCAAACAAC
GCAATAGCTTCGGTTAGAGCAAAGCCTAGAATGGCATAACCAAATAATTGTTTTGCCAATGATGA
GTTCAGTTCCGTTCTAAATCAATCATAATCCATATCAGTAAGTAATGAATCAGTCGGTCCAGACA
GAAGGGGATATCTGTTGCTTGTTTGGTAACAACTGATTCCTAAATCTCAATCCGTTGCTTGTTGG
CCGGTGCTTCTTTTATTCCTTCCGTAACCAGTCCAGCCATTAGTAACCCTTCTCCTACTTTCGAG
CCAACTTCCGAGCCAATTCGAGCCGATTCCGAGTCCCTTTACTAT
Right flanking sequence: Indices 526483 -- 526982
TCTATATACGGAGATCGAACAGCGCAGCGGGCAGCGCTGGGAGATTCTCTAAAAAGTACTCCAAA
GGCTTATATGCAATGCATTTCTTACTTCACAGATTCCAATTTGTACTCCTTCTCCCTAATAAAGT
GTACTCCTTCCGCGCCCACCTTCGAGCCCCTACCTAAATAAAACCACCCACCCTTGCCAGAGTCC
TCCGCAGCGCAGATCTTAGAGCCCGTCTCAGTCCAGTCCGGTGCTTGTTTCCTTTCCTCCCGTTT
TGCTATCGCTGCTATCCTTACGAGCCCCAGCAAGAGAACTCCCGCGCTAAGGCGCTCCGCTCAAG
CCTATGAAAGACAGAAAATCCGGAAGGAATAGAAGAGGATTAGGGTTTAAGACTCGCCCGAACTC
CCGAATTGGTAAAAAATACTAGTAGCTAGTTGGTCTCACTCTTCTTATAGATTAGCAGGTTATTC
TGTAATTCTCCTTTCGCCTTATCAATAAATAAATACATTTTCTAT
Found at i:528261 original size:24 final size:24
Alignment explanation
Indices: 528207--528270 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
528197 TTCTGCTTCT
* *
528207 GCTTACCCTTATTCAGATTCAGCT
1 GCTTACCCTGATTCAGATTCAGCA
***
528231 TAATACCCTGATTCAGATTCAGCA
1 GCTTACCCTGATTCAGATTCAGCA
*
528255 GCTTACCCCGATTCAG
1 GCTTACCCTGATTCAG
528271 CTTCTTCTTC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (24 bp):
GCTTACCCTGATTCAGATTCAGCA
Left flanking sequence: Indices 527707 -- 528206
CGGCAATCGCGAGTAGAGTATGAAGAACCTTCCCTAGGAGCTAGGAGGTGGAATACCGCACCGCA
GGAAGGAAAAGTAGTACCAGTACCCCTTAGATTAGAGGTGCAAACTCGTTTCTTTATGCAAGGTA
GGGGATCTAAGGTAAAGCACGGACAGCTGGGAGAAAATTAGAATACTAAAGCAGCGAAGTTCCCC
ATCCATCGGATAATGGGGCGGAGGACAGATCAGTACCCAGCCTGAGTGAAGTGAACTAAGGTCTG
CGTAGAGGTGGGCTTGGGCTCGGCTTCAGGGAAGAATTCACCGGTTCAGATTGAGAGGGAAAGAG
CTGAGCTGCCCTTGGGACTGCGACCGAAAAGACTGCAACAGCAACTGCTGGCTCTGCTGACCTTA
CTGCTTCAGCTTCTTCCGCGGATTCAGGAACAGAACCGGATTCGGCAACTGCAACAGCAACTTCG
TCAGCTTACCTGACTTCGGATGCTTTTTCTTCTTTTTCTGCTTCT
Right flanking sequence: Indices 528271 -- 528770
CTTCTTCTTCTTCTTCCGCTTTTTCAGCGGATTTCGCTTCTTATTCAGATTCCGCAACTGATGAT
GCTTATTCTTCGTCTTCTGCTTCAGCTTCTTCTGCCAGCCTTGCCAGCCCCTTTACTATATATAG
GTATAGGTCTTCAGCTCTGGCCGGCCGGTGCTTCTTTCGGAAGCTAAGCTATGGAGTTAAACTTG
CTTGAGGGAGGGCCCTAAATAAGGGAGACAAGCTACAATGATATATTCCATCCCGGACCACATTA
TTCACGGAACACATTCAATATCTGCTATATCTGTGGTTGAATCTCATGAGTAGTGTAGTCTATGA
ATTCTTATGATTATGAACTTAAGTACCGGCTGAAGTGACTAAGTAAGGACCGAAGACTAAGACCT
TAAATGGGATAGGGGAAGGGACCGCAGAGACTTAAACGGGATGGATAGGGCTCTAGTTACTGACG
GTGCGCGGGAGTTCTCTTGCTACTATATTTATATTCATTCCAAAG
Found at i:546968 original size:20 final size:20
Alignment explanation
Indices: 546943--547017 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 20
546933 GATGCGCGAA
546943 GCTAACGCGCAACGGCTTTC
1 GCTAACGCGCAACGGCTTTC
* *
546963 GCTAACGCTCAGTCCGTTGCTTGTTC
1 GCTAACGCGCA--ACG--GC-T-TTC
546989 GTCTAACGCGCAACGGCTTTC
1 G-CTAACGCGCAACGGCTTTC
547010 GCTAACGC
1 GCTAACGC
547018 TCAGTCCGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
20 17 0.39
21 4 0.09
22 3 0.07
23 2 0.05
24 2 0.05
25 3 0.07
26 4 0.09
27 9 0.20
ACGTcount: A:0.17, C:0.33, G:0.24, T:0.25
Consensus pattern (20 bp):
GCTAACGCGCAACGGCTTTC
Left flanking sequence: Indices 546443 -- 546942
AATTCTTCTTTTTTTTTTCTTCTTACTAGCGTAGGTGAGTGGTAAGCGTAGGAGGCGTGCCCGAA
GGGCAGCAGTGTGTGATTCTTTAGATTCTTTAACTGAGAAGGGCTTTAAGTCACCAACGACTTTC
TTCTGATCACCATCTGCTATTTGAAGCACTGATGAAGAGTGGAGGGGACTTCGACTGCCTTCTTG
TATCGGGTGAAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATTACCGTTATGA
GCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTCTACATGCAATTCGCTCACTTC
GGGAAGAAGAGGAGGCCCTTGCTCTATCTGCTTCTTCCTCTTCCCAGGAATGAACAATTGGATAA
AAAAATGATTTTCTTCTTTCTTTGTTTATATATATATTATTAATAATAATATTAAGATTAAGCAA
GCAATCAATAACACTCCTCTCCCAGCAAGAAAACGGATGCGCGAA
Right flanking sequence: Indices 547018 -- 547517
TCAGTCCGTTGCTTGTTCGGTCGAGATACTTCGTACCCTCTCCTTTCAGTCGAGAACTTCATGCC
TCTTTGAAAGCCTTGCTTGTTTCCTCCACCCCTACTAATAAGAATCGAATTCATTCCTTCATGAC
AGGATGACAGGAATCGATGAACCAGCACCATATGATTACCGAAAATCCGGCGGAGACTCCAGAGC
TGGATTGAATAAGTCGGAAACAGAAGCTCGGCATGAACGTTGATGAGCAAAGGTGGCAACCAAGT
TCTTACCTTCGTCTAACCCTCTTTCTGACTTAGACCCGAAAGCCTCACTCATAAGTTGTCGGGGC
TGAAAATAGAGATAGCTCGACAGCAGCGGAAAGCATCCCTAACTATTGAAAGCAGGATAGCAACG
ATGACTTCTTATCTTACGTGAATTCCGTTATTGGAACTTACGCAAGAACAACAGGCCGCACACCC
ATCGAAAGGATTTCATCTTGCTACTAGAGAAAACCAAAGGAGCAC
Found at i:546994 original size:27 final size:26
Alignment explanation
Indices: 546960--547036 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 26
546950 CGCAACGGCT
546960 TTCGCTAACGCTCAGTCCGTTGCTTG
1 TTCGCTAACGCTCAGTCCGTTGCTTG
* *
546986 TTCGTCTAACGCGCA--ACG--GC-T-
1 TTCG-CTAACGCTCAGTCCGTTGCTTG
547007 TTCGCTAACGCTCAGTCCGTTGCTTG
1 TTCGCTAACGCTCAGTCCGTTGCTTG
547033 TTCG
1 TTCG
547037 GTCGAGATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
20 9 0.22
21 4 0.10
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 8 0.20
27 9 0.22
ACGTcount: A:0.13, C:0.31, G:0.23, T:0.32
Consensus pattern (26 bp):
TTCGCTAACGCTCAGTCCGTTGCTTG
Left flanking sequence: Indices 546460 -- 546959
TCTTCTTACTAGCGTAGGTGAGTGGTAAGCGTAGGAGGCGTGCCCGAAGGGCAGCAGTGTGTGAT
TCTTTAGATTCTTTAACTGAGAAGGGCTTTAAGTCACCAACGACTTTCTTCTGATCACCATCTGC
TATTTGAAGCACTGATGAAGAGTGGAGGGGACTTCGACTGCCTTCTTGTATCGGGTGAAGAGAAG
GGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATTACCGTTATGAGCGGTACGTTTCAACCA
ATTAAACTATAAGCCCCTACGGATCTCTACATGCAATTCGCTCACTTCGGGAAGAAGAGGAGGCC
CTTGCTCTATCTGCTTCTTCCTCTTCCCAGGAATGAACAATTGGATAAAAAAATGATTTTCTTCT
TTCTTTGTTTATATATATATTATTAATAATAATATTAAGATTAAGCAAGCAATCAATAACACTCC
TCTCCCAGCAAGAAAACGGATGCGCGAAGCTAACGCGCAACGGCT
Right flanking sequence: Indices 547037 -- 547536
GTCGAGATACTTCGTACCCTCTCCTTTCAGTCGAGAACTTCATGCCTCTTTGAAAGCCTTGCTTG
TTTCCTCCACCCCTACTAATAAGAATCGAATTCATTCCTTCATGACAGGATGACAGGAATCGATG
AACCAGCACCATATGATTACCGAAAATCCGGCGGAGACTCCAGAGCTGGATTGAATAAGTCGGAA
ACAGAAGCTCGGCATGAACGTTGATGAGCAAAGGTGGCAACCAAGTTCTTACCTTCGTCTAACCC
TCTTTCTGACTTAGACCCGAAAGCCTCACTCATAAGTTGTCGGGGCTGAAAATAGAGATAGCTCG
ACAGCAGCGGAAAGCATCCCTAACTATTGAAAGCAGGATAGCAACGATGACTTCTTATCTTACGT
GAATTCCGTTATTGGAACTTACGCAAGAACAACAGGCCGCACACCCATCGAAAGGATTTCATCTT
GCTACTAGAGAAAACCAAAGGAGCACACAAAGCAAACAAAGAATA
Found at i:547013 original size:47 final size:47
Alignment explanation
Indices: 546944--547036 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
546934 ATGCGCGAAG
546944 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
1 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
546991 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCG
1 CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCG
547037 GTCGAGATAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.15, C:0.32, G:0.24, T:0.29
Consensus pattern (47 bp):
CTAACGCGCAACGGCTTTCGCTAACGCTCAGTCCGTTGCTTGTTCGT
Left flanking sequence: Indices 546444 -- 546943
ATTCTTCTTTTTTTTTTCTTCTTACTAGCGTAGGTGAGTGGTAAGCGTAGGAGGCGTGCCCGAAG
GGCAGCAGTGTGTGATTCTTTAGATTCTTTAACTGAGAAGGGCTTTAAGTCACCAACGACTTTCT
TCTGATCACCATCTGCTATTTGAAGCACTGATGAAGAGTGGAGGGGACTTCGACTGCCTTCTTGT
ATCGGGTGAAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATTACCGTTATGAG
CGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTCTACATGCAATTCGCTCACTTCG
GGAAGAAGAGGAGGCCCTTGCTCTATCTGCTTCTTCCTCTTCCCAGGAATGAACAATTGGATAAA
AAAATGATTTTCTTCTTTCTTTGTTTATATATATATTATTAATAATAATATTAAGATTAAGCAAG
CAATCAATAACACTCCTCTCCCAGCAAGAAAACGGATGCGCGAAG
Right flanking sequence: Indices 547037 -- 547536
GTCGAGATACTTCGTACCCTCTCCTTTCAGTCGAGAACTTCATGCCTCTTTGAAAGCCTTGCTTG
TTTCCTCCACCCCTACTAATAAGAATCGAATTCATTCCTTCATGACAGGATGACAGGAATCGATG
AACCAGCACCATATGATTACCGAAAATCCGGCGGAGACTCCAGAGCTGGATTGAATAAGTCGGAA
ACAGAAGCTCGGCATGAACGTTGATGAGCAAAGGTGGCAACCAAGTTCTTACCTTCGTCTAACCC
TCTTTCTGACTTAGACCCGAAAGCCTCACTCATAAGTTGTCGGGGCTGAAAATAGAGATAGCTCG
ACAGCAGCGGAAAGCATCCCTAACTATTGAAAGCAGGATAGCAACGATGACTTCTTATCTTACGT
GAATTCCGTTATTGGAACTTACGCAAGAACAACAGGCCGCACACCCATCGAAAGGATTTCATCTT
GCTACTAGAGAAAACCAAAGGAGCACACAAAGCAAACAAAGAATA
Found at i:600797 original size:17 final size:17
Alignment explanation
Indices: 600775--600809 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
600765 ATCTTCGCTC
600775 CAGCAAGAAAACGGATG
1 CAGCAAGAAAACGGATG
600792 CAGCAAGAAAACGGATG
1 CAGCAAGAAAACGGATG
600809 C
1 C
600810 GCGTCTAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.29, T:0.06
Consensus pattern (17 bp):
CAGCAAGAAAACGGATG
Left flanking sequence: Indices 600275 -- 600774
TGATCTTTGGCATCAACCTCTTTTTTCTTTGAATCACCAGCAATCTTCCCTCCTCTCCTTTCAGT
CGAGCTACTAGTAACCTTAGCACAAGTAGTACACTAAGCTCTTCAAACCTTAGCCCAAGCACTAA
GCGTCTTCAATACCAAAACTATCAAATAGGTGCGGAAAATCCTAATCCTATTCCATATGATATTA
AGCTTCTTCGGTCAAATCAAATAAGGTAGGGCTGAGGTTCTTGTACCTATCCCAGCAAGAAAACT
CCATAGCTAACGCTAAAAAGCCAAGAAGCAAGGGAATCTCACAGTGCTCGTGCAAAGCAAACTAA
AAAAGAAATGGAGTTCACCGAAAGGCGCCACTGACTTACTACTGAATGACTAGCTACTGACTTAC
TAACAGCTAACTGTCTTCCTATCTTCCTAAGGCAAGAAGGAGAAGACTGTCTTCCTACCGTTCGT
GCCAGCAATCTTCCCTCCTCTCGCAAAGCTCGAGCATCTTCGCTC
Right flanking sequence: Indices 600810 -- 601309
GCGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCTAACGCGCA
ACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTTCGTCTAACGCGCAACGGCTTTCGCGCG
TTTGCGCTCGGGCCGGTGCTTGTTTGCTCGAGCAAAGCGAGAGGTACGAAGTCGCTCGAGCGTCA
GCTCGAGGGCTAATGGCGCTAGCTCAGGCCGTTGCTTGTTCGTTAGCGCAACGGCTTTGACGCTA
TTGAGTTTGATTTCGGGGTGAAGCTTACTTGTTAGAGTAAGGAAAGCAGACAGTGCGGATCTTCA
CTTCAATCATAGGAAGCAGAGAGGACTGGATCTGGATACCATAAGGCACATGCAACAAGATGAAA
AGCGTCGGAAAAGAGGCTTCATGGAAGAAGAGGTTGGGCTGATTTTGAGCTGCCCTTAGACCGAT
TCTCTCTTTCGGTTCGGTAGCAGACACCAAGATAGGCTAGGCTGG
Found at i:600887 original size:51 final size:51
Alignment explanation
Indices: 600811--600963 Score: 279
Period size: 51 Copynumber: 3.0 Consensus size: 51
600801 AACGGATGCG
600811 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
600862 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
* * *
600913 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCGGGCCGGTGCTTGTT
1 CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
600964 TGCTCGAGCA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 99 1.00
ACGTcount: A:0.09, C:0.31, G:0.29, T:0.30
Consensus pattern (51 bp):
CGTCTAACGCGCAACGGCTTTCGCGCGTTTGCGCTCAGTCCGTTGCTTGTT
Left flanking sequence: Indices 600311 -- 600810
CCAGCAATCTTCCCTCCTCTCCTTTCAGTCGAGCTACTAGTAACCTTAGCACAAGTAGTACACTA
AGCTCTTCAAACCTTAGCCCAAGCACTAAGCGTCTTCAATACCAAAACTATCAAATAGGTGCGGA
AAATCCTAATCCTATTCCATATGATATTAAGCTTCTTCGGTCAAATCAAATAAGGTAGGGCTGAG
GTTCTTGTACCTATCCCAGCAAGAAAACTCCATAGCTAACGCTAAAAAGCCAAGAAGCAAGGGAA
TCTCACAGTGCTCGTGCAAAGCAAACTAAAAAAGAAATGGAGTTCACCGAAAGGCGCCACTGACT
TACTACTGAATGACTAGCTACTGACTTACTAACAGCTAACTGTCTTCCTATCTTCCTAAGGCAAG
AAGGAGAAGACTGTCTTCCTACCGTTCGTGCCAGCAATCTTCCCTCCTCTCGCAAAGCTCGAGCA
TCTTCGCTCCAGCAAGAAAACGGATGCAGCAAGAAAACGGATGCG
Right flanking sequence: Indices 600964 -- 601463
TGCTCGAGCAAAGCGAGAGGTACGAAGTCGCTCGAGCGTCAGCTCGAGGGCTAATGGCGCTAGCT
CAGGCCGTTGCTTGTTCGTTAGCGCAACGGCTTTGACGCTATTGAGTTTGATTTCGGGGTGAAGC
TTACTTGTTAGAGTAAGGAAAGCAGACAGTGCGGATCTTCACTTCAATCATAGGAAGCAGAGAGG
ACTGGATCTGGATACCATAAGGCACATGCAACAAGATGAAAAGCGTCGGAAAAGAGGCTTCATGG
AAGAAGAGGTTGGGCTGATTTTGAGCTGCCCTTAGACCGATTCTCTCTTTCGGTTCGGTAGCAGA
CACCAAGATAGGCTAGGCTGGGAAACCTTATTCGTATTCGATACGATAGGACAGGTAAACAAAGC
AAGGCCTGGAGTGAAAGAGTCTGGGTCAAGAGATTTTCCCCTGGAAGCCCGCCTAGAAGGATAAG
AGAAGAGGCAGGAAGACGGGCTTAGCTCTTTTCAGGTTGAGAAGG
Found at i:643849 original size:21 final size:22
Alignment explanation
Indices: 643818--643860 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
643808 AGTAGAACGA
* *
643818 AAAGGAGGGAGCCGGAGGCTTC
1 AAAGGAGGGAGCCAGAAGCTTC
643840 AAAGG-GGGAGCCAGAAGCTTC
1 AAAGGAGGGAGCCAGAAGCTTC
643861 GCTTCCGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.30, C:0.19, G:0.42, T:0.09
Consensus pattern (22 bp):
AAAGGAGGGAGCCAGAAGCTTC
Left flanking sequence: Indices 643318 -- 643817
TTTGATGGAATGGCCCAGCCCACCCAAGAGCGCTTATGTCATATGGGAAACTCATGGCTGGTGGA
AACAATCCTTATGGTTTTGATATCCGGTAGGAATAAAAAGAATCAAAGTCCAGGTTGGTTGGTGA
GCCTAGTGATAGGAGACTATCTAGCTTGGTTCGGAGAGCACTTGTTGGGTTAAAGATTTTTTTGT
TGCTAAATGTTACGGCCTAAATGCTGAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCA
AAGTGTTCCCGGACCGCATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATTTCATCTT
TGAGGAATCAGCAAAGAAAAGAAAAACGGGTCAACATCTTAATGTGTATTTTTGAGAGATTGTCC
TCGGGCGGAGGAGTGTCCACATGAGTTCGTTGAGGTGTCTACATAGGAATAAAAACAAACCTCTT
TTATATTCTGTCGAGAGTTCGGATTGCTCCACCTAAGTAGAACGA
Right flanking sequence: Indices 643861 -- 644360
GCTTCCGGTAGCTTGCTTACTCTCCTAGTTAGAAGAAGGCTCTTTGGCGAATTCTTTAGATCTGG
GTAGAGTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAAGATCATGATAAAGTCCCCTTGACTTG
ATATTCTATTAGTAAAGCGCTAGCGCGCTACAACTAGCATAGCAGCCTGCAGAAAAGGCTCTAGA
GCCCCTAGTCCTAAGTTGGAGCAACAAGCAACGGATTGAGCGCATCTTTCCCCTTTCTATTAGTA
AGGTTGTCAAAAGGTGGGTTTCTTACTTAGTGCTTGTTCAGTACAACGTACTCTTGATAAGAGAA
TGAATACACAGGAACATGTGTGTGCCATCGAGCCTAAACCAGTGTATCATGCTATGGCACAACAA
TCAGGTTCAAGTTTTCCCTGCGGACCCAAGGCCCTTTTCATACGAAGCCAACGCAGCGAAAGTCT
ACGCTGATGTTTATTACTATTCAAATCAAAGGGCGATATTCAAGT
Found at i:659693 original size:24 final size:24
Alignment explanation
Indices: 659665--659720 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
659655 GAACCACGCA
659665 CCTGACCCAGCAGAGCCGGTTGCC
1 CCTGACCCAGCAGAGCCGGTTGCC
659689 CCTGACCCAGCAGAGCCGGTTGCC
1 CCTGACCCAGCAGAGCCGGTTGCC
659713 CCTGACCC
1 CCTGACCC
659721 TGACGTTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.45, G:0.27, T:0.12
Consensus pattern (24 bp):
CCTGACCCAGCAGAGCCGGTTGCC
Left flanking sequence: Indices 659165 -- 659664
CTTCAACGGAAAAAAAAGAAATAACATAGATAGGCAGAACCAAACCAGAAGAATTGAATTGTGTT
TTTTAAGTGAATTTTATCCTGAGAAAAAATTCTGACCTACAGGTGAACTCCGAAAAGCCCGTAGC
GTAAGTGTGTGTTTTGACAAAAGTCTTTGTCTTTCCCTTGTTGGGAAAGGGGGAGCGGAAAAAAA
AGGAAAACAAGTACGAAATGAACTTCAAGGTGTTTAGAATGTTATTTTTTTATGTAGTTAGTATG
TCTTTTTTTGACCCAAACGGTGTACTCGGCTTTGATTTCAGTCTGATTTTGGTAAAACTCCAATC
CATGCTCCTCTCCAGAGCGGTCCGCTGCCTATTTAGTCGGCTGATTGGGTGGGATCTTCCCCTTT
TTCTTTTTTGCATTGTCGGTTCAGTAGTAGGTTCCAGCTTGCACATGATGGATCCGGAGGATGGA
AGCTCTGAGCGCGTACCACAGTCCGAGCCCAGTGTGAACCACGCA
Right flanking sequence: Indices 659721 -- 660220
TGACGTTTACCATCCAATACTAGATGACAACACTCGTCGCGCCGAACTAGATGAGCGCGCGGGGT
TTCATTTTGCGGAGTTGTCTGACCAGAATAAAAACTCGATTTTGGACTCTCAAGTCATTATAGAA
AGAGCCATTGAGAAGGCTCTGCTCTCCGACGGGTATTCCCGGGATGAACTCACTAAGCTTAGCAA
ACGAAACGAAATTCGGGGCTTTTTGTTCTACCCTAAGGGGAAACTGCTTTCTGTTAGAACATACA
AAAAGCATTTGGAAGAAGTTTCGTTTGGGACCCACAGGAGCACGCCTTATAGGCATCTTATAGAT
GCCATCTCTTCTTCTCGGATGTTCCTAAAAAAGGTTACACCTATTAAGAAGTGGGAATTGAAAAA
GGAATTCTAAGGGTTTGGCTGTCAGTTCATATCTTTAACATCATTTGATACTCGGTTTATGACTT
ATTCTAGTTTGGTACTCAAGATATTGTGTCTGTAGAGGTGGATAG
Found at i:706716 original size:18 final size:18
Alignment explanation
Indices: 706695--706737 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
706685 CAACCTTGTT
706695 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
706713 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
706731 GACTATG
1 GACTATG
706738 GCAGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 706195 -- 706694
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 706738 -- 707237
GCAGGGCTTTAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTTCAAAGGCGAGCACTGAAATGAGAAAGATCATTCGTGACGCTGAACGACACTAAAAAAAC
ACTAAAGCGCACAAACGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCA
TGTTCGCCTGCTGGGCCGAGTGTTCGCCCACTGAAGACTCTTCGCCTTTAGATAACAAAAAGTGT
CCGCCCGGGTCGCCAAACTACGACGAGAGTTTCGCCTTTGGAAGCGCCAGTCGCGTAGGGCGCCT
CGTGGTAAGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGA
GTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCACTCCAACAGACAGGCATGGTT
CTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGG
Found at i:718409 original size:15 final size:15
Alignment explanation
Indices: 718385--718414 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
718375 GAATCATTCC
718385 CTATCCGTAGTAGTA
1 CTATCCGTAGTAGTA
*
718400 CTATCGGTAGTAGTA
1 CTATCCGTAGTAGTA
718415 TATGAGCACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (15 bp):
CTATCCGTAGTAGTA
Left flanking sequence: Indices 717885 -- 718384
ATTGCTTATACCGAGACTGTAACTAAAGAATTAAAGATTTGAAATAGGCAAGGGATTTAGCTACC
GGGTTGATTTCGCTATTTTTCTATTGAGTTTGATTGCTTTCACTCATTGACGATAGCACTCAACT
ATTTTGTTGTTACTTGATCTCCTAGTTTATGCTGATACGGATTATCGATTGCCCTTTAAGACTAA
CAGATTCAGGATTTCTTCCATGTTTTCTTGCTTTCAACGAGAAGGCAGATTGAACTACCTTAACC
TTTCGCGCCTTGTTGGGTCCTATCGCTTGAGTTAGAGGTAATTTTCCCCTCCGGTGAATTAAGAT
AGTTCGCTTCGCTTGTCATTGAGTCAGACCTTTTTGACTCTATCGTGCATTCTCTTTCCACTAGG
AAAGAGAGAGTGATCTCATCTCGCAAAAGAGCATCAGTCGAATTGCGTAAGTGATCACTAAACCT
TCGTCTACTCGTTATGGGCGAACGATAAGAATCCTGAATCATTCC
Right flanking sequence: Indices 718415 -- 718914
TATGAGCACTATATCAATTGAGCATATTTCTATATCAATTCGTCTCATCTATGACGTATTCTATG
ATTGAGAAAGCGACGGGTCCAATGAGCTCTCCATTAGTGCCTCGAAATGAGGCCGGAGAGCCGGT
CAACCTGAGATCGGCTAAGATCGAGATAGAAATGGTGATGAGATGGCATATTGAGATCTAGAAAG
TGTTCCGTGATGGAAGATTGAATTGTAGTCTGTCTTAGTAGTCAGTCAATCCACTCCCGATAGGG
ATGAAAGTCAGAGGCAGCAGTCCGGGTCTTGGTGTGAACAAAAGGCGTAAGCGCAGCAGTTAGAA
TTTCCATTTCAATAGCATCTGGCGTGAAGCTCTCGACTGACAAGGAGAGGTATGAGATTGCTTGT
TAGAGGAAGCTCTTTCTAAGCTTTAGGTATGAAATCACTCGAGCGAAGCGAGAGGGTTGTTGACT
CGACTGGTTGGAGAGGATAGGAAGTAGTACACTACGCCCGGTTCA
Done.