123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037304
Parameters: 2 7 7 80 10 50 500
Length:  367808

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659--757	34	2.9	34	93	3	162	26	7	39	27	1.82
10083--10120	20	1.9	20	84	10	51	55	7	36	0	1.29
15164--15242	30	2.7	30	96	2	142	20	29	16	34	1.94
25279--25304	12	2.2	12	100	0	52	42	7	23	26	1.81
30825--30870	24	1.9	24	100	0	92	21	28	26	23	1.99
37002--37066	34	1.9	33	87	3	94	15	21	12	50	1.76
46593--46697	52	2.0	52	100	0	210	35	22	19	22	1.96
63630--63671	18	2.4	18	84	11	52	28	33	14	23	1.94
77082--77123	18	2.3	18	100	0	84	4	33	26	35	1.77
117554--117622	28	2.4	29	82	2	77	37	24	20	17	1.93
118662--118762	30	3.4	30	91	5	161	26	23	18	30	1.98
119816--119840	13	1.9	13	100	0	50	24	16	44	16	1.86
121442--121510	25	2.8	25	93	0	120	43	13	20	23	1.86
121608--121671	26	2.4	27	89	2	103	32	18	28	20	1.96
121934--121985	18	2.8	19	79	5	52	30	21	23	25	1.99
121934--121994	19	3.3	19	81	4	70	32	21	19	26	1.97
123222--123251	14	2.1	14	100	0	60	6	56	16	20	1.62
124212--124272	30	2.0	30	100	0	122	39	11	9	39	1.75
142096--142138	18	2.4	19	80	11	54	34	23	23	18	1.96
156786--156899	31	3.7	31	100	0	228	15	29	15	38	1.89
158852--158881	15	2.0	15	100	0	60	40	20	20	20	1.92
174475--174533	30	2.0	30	93	6	102	23	5	28	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176813--176838	12	2.2	12	100	0	52	69	0	23	7	1.14
178939--179010	10	7.7	10	80	13	91	11	58	20	9	1.60
178942--179010	18	3.7	18	83	11	70	10	59	20	10	1.58
178937--179010	28	2.7	28	97	2	141	10	56	21	10	1.64
188646--188710	34	1.9	34	87	3	96	29	23	20	27	1.98
194856--194954	34	2.9	34	93	3	162	26	7	39	27	1.82
203349--203387	19	2.0	20	90	10	62	30	15	33	20	1.94
203468--203501	17	2.0	17	100	0	68	11	11	35	41	1.78
262366--262406	19	2.2	19	86	8	57	21	24	29	24	1.99
286583--286629	23	2.0	23	83	8	58	42	25	19	12	1.86
301875--301946	29	2.5	29	100	0	144	33	23	27	15	1.95
302337--302386	25	2.0	25	100	0	100	24	12	28	36	1.91
306456--306494	19	2.1	19	100	0	78	46	5	10	38	1.60
317179--317307	29	4.4	29	98	1	240	41	18	27	12	1.86
319666--319691	8	3.2	8	100	0	52	50	11	38	0	1.39
326710--326753	12	3.7	11	84	6	52	29	45	11	13	1.79
326705--326753	24	2.0	24	92	7	82	28	46	10	14	1.77
328994--329041	23	2.1	23	96	3	89	20	29	8	41	1.81
342839--342872	15	2.3	15	100	0	68	29	17	14	38	1.90
342845--342879	15	2.3	15	90	0	52	31	20	17	31	1.95
353470--353524	28	2.0	29	89	7	87	29	32	7	30	1.84
354686--354735	24	2.1	24	100	0	100	30	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355371--355404	14	2.4	14	100	0	68	14	11	20	52	1.73
366617--366665	15	3.1	15	80	11	62	36	12	16	34	1.86
366617--366665	17	3.1	16	91	5	73	36	12	16	34	1.86
366773--366842	35	2.0	35	100	0	140	48	14	17	20	1.81
366782--366858	35	2.4	32	83	14	88	48	14	16	20	1.81

Tables:   1

The End!