123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_035963
Parameters: 2 7 7 80 10 50 500
Length:  446257

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109--212	51	2.0	51	98	0	199	25	30	27	15	1.96
2893--2939	24	2.0	24	86	0	67	27	21	27	23	1.99
24438--24472	16	2.2	16	89	0	52	28	14	20	37	1.91
25909--25949	20	2.0	20	100	0	82	14	0	31	53	1.41
50097--50166	27	2.6	27	81	0	104	22	15	24	37	1.93
50186--50256	27	2.6	27	84	0	79	21	18	19	40	1.91
54478--54563	33	2.6	33	94	5	156	32	12	31	23	1.92
60261--60318	24	2.4	24	100	0	116	22	24	25	27	2.00
105359--105436	25	3.2	25	63	23	65	25	25	10	38	1.87
111092--111127	18	2.0	18	100	0	72	33	16	11	38	1.84
111180--111317	69	2.0	69	98	0	267	23	13	27	35	1.93
112683--112786	51	2.0	51	98	0	199	25	30	27	15	1.96
115467--115513	24	2.0	24	86	0	67	27	21	27	23	1.99
137012--137046	16	2.2	16	89	0	52	28	14	20	37	1.91
138483--138523	20	2.0	20	100	0	82	14	0	31	53	1.41
167121--167175	28	2.0	28	85	7	76	12	32	18	36	1.88
171194--171234	12	3.5	12	75	18	50	17	12	26	43	1.84
171189--171243	23	2.4	23	100	0	110	18	12	25	43	1.85
190864--190918	27	2.0	27	92	0	92	43	14	16	25	1.86
205265--205302	19	2.0	19	89	0	58	39	18	13	28	1.88
245373--245413	20	2.0	20	100	0	82	53	31	0	14	1.41
245982--246034	27	2.1	23	83	16	70	39	11	15	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249278--249307	15	2.0	15	100	0	60	46	13	6	33	1.69
304184--304269	33	2.6	33	94	5	156	32	12	31	23	1.92
313901--313941	20	2.0	20	100	0	82	14	0	31	53	1.41
337104--337224	33	3.7	33	100	0	242	19	37	12	30	1.89
393760--393857	52	1.9	51	81	8	119	29	14	15	40	1.86
396016--396045	15	2.0	15	100	0	60	33	6	13	46	1.69
399288--399338	27	2.0	24	88	11	75	29	15	13	41	1.86
399910--399950	20	2.0	20	100	0	82	14	0	31	53	1.41
425625--425660	18	2.0	18	100	0	72	44	11	22	22	1.84

Tables:   1

The End!