Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029855
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 415602
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:12088 original size:39 final size:39
Alignment explanation
Indices: 12034--12112 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
12024 CGATTTTCTA
*
12034 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
12073 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
12112 T
1 T
12113 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 11534 -- 12033
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCAGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCAAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTTAAACC
ATCTGCTAGAGGTTGTAACAATCCGAATGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACAGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 12113 -- 12612
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCAGAGAAGAGTTGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTTTACTGCATAAGG
GCCATAAGGGCATAAGCGAAGTCAAGAGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTA
CCTTCATTCAACAGATTTGTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCT
CTGCACGCTGCCTGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTA
ATGGTTGAAAATAGGGGGCCAACCAAGACCCCTAATAAAGCTTTGTTCGATAAAGCAAACGTTCC
GACAACTTCGGACCAGATTAACCCTTTTGAATTAGCCGATCTTACAAAATCGATCGGGCGGGCTG
GTTGGGAAGGGGTGATTAGCGGAGAAAAGAATCGCTGAGAGATAG
Found at i:34117 original size:24 final size:21
Alignment explanation
Indices: 34090--34133 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
34080 TTTGAATGCT
34090 TTCCTATTCAAGACATACTACCAA
1 TTCCT-TTCAAG-C-TACTACCAA
*
34114 TTCCTTTGAAGCTACTACCA
1 TTCCTTTCAAGCTACTACCA
34134 CTACCGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 5 0.26
24 5 0.26
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (21 bp):
TTCCTTTCAAGCTACTACCAA
Left flanking sequence: Indices 33590 -- 34089
TTGAAACCTGTCCATTTTTCCTTCGTATCTATAATCTAAAAACTTCTTACCTCTGTGCCTTCTGT
ACTTCTCGGCTCAAGCAAGAGCCACAGTGACTGGAACAACAGGCTTGAAGACCAACATCAGTCAA
GCAAGCAATTTGAATAGGGATTATGAACAGGCCCTTACCTTGGCCTTACCCGTTCGATTGATTGT
TCTAAAGTCGAAGTCGTTTCGTTAAGTCGAATTGAAAGGTAGGTTTTGTCAGTGATTAAATGGAA
AGGGGGAGTGGTTCGGGCCCACTCTTGAACTTTTAGGCTAATTAAAAGCCGAAACAAAGGCAAAA
TATCGGCATGTAACTGAGAAAGATGGGATTCGGTCAACAAACAAAGGAAATTAAAACACTCCCTT
CTTTCTTTTCTGTCGACAATGATGAAAACCAGATCGAACTCTAAAGGAAAGCCTTTGACTTCATT
GTTCAAGAGCTTGAACATGGGTTGAGTTCATACATTTTGAATGCT
Right flanking sequence: Indices 34134 -- 34633
CTACCGAAGCTGGCTTGCTTGTTTTGGTTACCGGTTGGGGTTTTGAAACCAGAGAAAGAAAGAAG
ATCCGGTTGGACTTGCTAGCGATGGGAGATTAGTCACCGGAAGACTTGCTCCTTCAAAATAAGGT
GGCTAAGACGGGTGGCCTATTCCAATAGCTGGCAGACGGGCTATTACGCCTATTCCAACATATTC
CGATTGTGATACAATTCCATTGCCCGCTCCTATTCATGTTCGTGCTTACTTGTATGCGTCAATAA
AGAAGGACTCCTATCCGGGGTCTGAAACTCGGTCTGCTTGCTCCTACAAAAGCTCATACGGGGTG
TCTCCTATTCCTCTCCCGATACGAGTTATTTCCTGACCGTTCCCTCGTGCTTGTTTCAGGAAGCA
TTTCGGTCACTCCAGTAAGTATATAGATTATTTGACAGACGACAAAGAGTGATTTACCGACGAAA
AGAGGTCAAGCCGATAGGACCTACTCGAACAATCGCCCTACTCGA
Found at i:145902 original size:61 final size:61
Alignment explanation
Indices: 145807--145928 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
145797 AGGTAAACAA
145807 GAGCAAGTCAGATTTTTCTCCCCAACGACAAGCGAACGGGCATTTTCGGGGACTAGCCCGC
1 GAGCAAGTCAGATTTTTCTCCCCAACGACAAGCGAACGGGCATTTTCGGGGACTAGCCCGC
145868 GAGCAAGTCAGATTTTTCTCCCCAACGACAAGCGAACGGGCATTTTCGGGGACTAGCCCGC
1 GAGCAAGTCAGATTTTTCTCCCCAACGACAAGCGAACGGGCATTTTCGGGGACTAGCCCGC
145929 TTCCCATTAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (61 bp):
GAGCAAGTCAGATTTTTCTCCCCAACGACAAGCGAACGGGCATTTTCGGGGACTAGCCCGC
Left flanking sequence: Indices 145307 -- 145806
CCTCATTCACTTCTAGGACTTGGGTGAGAGAGGGGGGAATAGCATAGAATAAATCAAGTAGAAGT
GCAGTTCCTATCAGACAGCTTATCTCTGAGCACCAGCTGTTACGCTGACAACCCCCGTTACGCCG
CGCTTTAACTCCTAACCCTAAGACAGAGTAGTCTTACTTAGTAGCAGCTTAGTAGCAGTAGGATT
ACCTGATTCCCTTCTTTCTTTCTTACTTTCCTGCTTTCCTTGCTAGGTCCAATAGGCTGGCTAAA
AGGGGGTGAAAGAAGAGCTTGTTTGCGCTGAATCGTTTGCACCTTGATTTGCTTATAGTGTTGCT
AAGAGATAGAAAAGAACTCATTGTAATCATAAGGAACGCCTTCCCGGGCCCATAAACAAGGTTTG
AATAGTTCAGGAAAGGAAGGACAACTAACTATAGGGTACGCCCAACATAGAGTGGGGCATGTTTA
TATCAATCATTCGGAAAACAGTACGGCTACTAGTAAGGTAAACAA
Right flanking sequence: Indices 145929 -- 146428
TTCCCATTACTCAAGAGGGCAACTCCTCGCACATAATTAAGGGAGCCATTGAAAGGTGACTGAAA
CACCAGAAACGGGGACTACCCGAGCTAATGATAGAGGCAAGAACACTTTCCGGCCAGGCCTTACT
ATAACCAACCTCACAGATCCCACTCAATCTTTTACACCGATGTATCGTACTCTCTCGACCAGGTC
ATCATAAGAAAATACTGCTAAATCTTTCCGAAATGAGAGAAGGAGGGAAGGCGCGCTACAACTAA
CATAACAGCCAGCTGAAAAACGCCAGCTAGCTAGGCTAGCGCGCAATGGCTTTCTCTGATGGGGG
CTCGCTTCTTCAAGCGGAGCCCAACCTATACAAGGTGCTGCTCGCTTTCTCTCAGCCACTAGTGG
CTTATGTAGTGGTCGGCATTCCTACGTGCTCCTCCTTGCTTGCCCCCCTACTTAAGAATCCAAAG
GTGACCTTTGGATGTTGTCGTGACGCTTTGGTTACGAAGGGGGTC
Found at i:195031 original size:21 final size:21
Alignment explanation
Indices: 195007--195047 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
194997 GCAACCAGCC
195007 CTGCCA-CTCAATCCTCATGCT
1 CTGCCAGC-CAATCCTCATGCT
*
195028 CTGCCAGCCATTCCTCATGC
1 CTGCCAGCCAATCCTCATGC
195048 GGAACAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.17, C:0.44, G:0.12, T:0.27
Consensus pattern (21 bp):
CTGCCAGCCAATCCTCATGCT
Left flanking sequence: Indices 194507 -- 195006
TTTGAGTTCCCCTGTCTCCCATCCTCTTTTCAAGTCCCACTCTTTTCCCGGTTAACAACGGCGGA
CCCTCTTTGTTATGTTAAATAGAGTCCCATCTAAGGGAACAGAACAATTTAGTATCAAAAAGTCA
CATGGCAACCTATGCCCGAATCACACATTCTTTTTTTTTTTAGTTTTTTTCTTTTATAGTCTTTT
CTTTATTGGCTTCATCCCGTCCGTCCCATTACATCTAGTGCGTGTCATACTTTGGGGGGTATACG
CCCTTAAAAATGGCTCTTCAACAACTCTCATCTTTGGATGTAGGTTGTTTAGGGGATCTGGCGTG
GATAGTTGGTTATATTCTTTCCATTTTTTTCATCGAAACCGAAGCCACGGCAATGATGTTTATGG
GCTCTGAGATTTCCAGTTCCAGCATTGAGGTAATGCCTAATGGCATCGGGAGCGAGTTGGAGGGG
CGGCCCGAGATCTTGAGAATGGCTTATCAACCTCAGCAACCAGCC
Right flanking sequence: Indices 195048 -- 195547
GGAACAACAAGCAGAAATTTATCATCCAGCACCAGCGGCGGGGCAATTGCCCATCGAGGGTCTAC
TAGAATCCCAATGGGTTACTGATCGCGAAAACAAAGTAGCCGATCTCATCTGCGAATTGCGGAAA
GAAGATGGATTGCGACTTCCTGCTGCACACCGCTTGCAGGAAATTTTAGAGCTCTTGGAGCACAA
ATATGATGTGGAAAACCTCCCCGCTATTCTAGCGGATTTGTAAGCTAATGGGCGCTCTAGCCCAT
TTTACAAGGACTCCCTTACTTTTTATAATGACCTGAAGGGGGTCTCAGAGACTACGCTGAAACAC
TATTCAAATAATAGAGTTCCATAATCCCCCTTTTTTTTCATTCTTTTCTTATGAGGTCGTGTACA
AAAACCTTAACCGCACAAGCCTGGGTTGGGCCTACCTCCATCCCTAGAGGAGCCGTATGAGGCGG
AAGCTCCACGTACGGTTTTGAAGCCGAGCCTTTCCAGCAATGGGG
Found at i:199003 original size:18 final size:18
Alignment explanation
Indices: 198980--199022 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
198970 ATCTTCCAAA
198980 TATATAAATATAA-AATAT
1 TATATAAATATAATAAT-T
*
198998 TATATATATATAATAATT
1 TATATAAATATAATAATT
199016 TATATAA
1 TATATAA
199023 TAGTAAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATAAATATAATAATT
Left flanking sequence: Indices 198480 -- 198979
ACAAAGCCCCACCCCTCTTTTCCCCCCTTTAATGAAAGACCCTCGCCCCGCTTCCTATTCATTTG
TGGGTCGGGACCCGAGGGCCTTTTTTTTCTCAAGAGGTTATTTCGAGAATCAACCAACCGACAAA
TCGGTTTCCCAGGTGACTCACAGCCTCCCTCTCGCCCAAATGAAGGATGAATTAAATCAATAAGC
TTTTTGATTGATTCAGGGCGCAGCGAAGCAAAATTCAATCAAGGCAAGGTAGTTTACTTGCTTAC
TTGTTAGAGGAAGGTCTTGAAGAGCCTGACGCTGAGTCATCCTATTCAAATTTAGTTATGCTAAT
GGAACAGGAAAAGTTTTCAGATGATATGGACCCCCAAGAGATGAGCGAGAACCTCCAATTGCTTA
GGGGTCACACTCTGTCCCGCTTGGTGGACGAAATCTTCTCCCCTTTTAGAATTCTTTCTCCCACA
CACCTTTGCCCTCTTTCACCGAAGAGGAAAGAAGAATCTTCCAAA
Right flanking sequence: Indices 199023 -- 199522
TAGTAAGTAGGGCCCCAGAACGCTAAAAAGGTGGGGGAACAAGAGTTGTCACGATAGGAAAGAGA
AAAATGACTCTAAGGAACCAACGATTCTCTCTTCTTAAACAACCTATATCCTCCACACTTAATCA
GCATTTGATAGATTATCCAACCCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTCCCTTAGCTG
GTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATCACACACCTCATGTG
GATCTAGCTTTCAACAGCGTAGAACACGTTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTA
TATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCGTGGTCTAT
ATCATGCGAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTCTCGGAGTTGTAATCTTCCTATTA
ATGATTGTGACAGCTTTTACAGGATACGTACTACCTTGGGGTCAG
Found at i:229120 original size:12 final size:12
Alignment explanation
Indices: 229103--229127 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
229093 CAGCTTGTGA
229103 AGAAGCAAGCTT
1 AGAAGCAAGCTT
229115 AGAAGCAAGCTT
1 AGAAGCAAGCTT
229127 A
1 A
229128 TCCCCCCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (12 bp):
AGAAGCAAGCTT
Left flanking sequence: Indices 228603 -- 229102
TCGAAAGTATCTTTTTTCTGGGAACATGGTCAACCGGAAATTATTATGTTCGCGATTCTTCATCC
ACCGATGCAGAAAATGCTCCAGTTTTCCATTCTCGTATGAGGCCGGAAAGTTTATTGGCAACAGG
TCGGCACGAAGTGATTCATCATGCTCAAACATGAGCCGATCGTTCGTTAGGGACCCTTTATAGAT
CATCAAATTCCCACAAATGGAATGAGAAGTGGGTCCATGTAAATGATCGAGACCTCGCAAACAAC
AACGCTCCTTCCCCATATGGAGTTCGGAACCCAAAGGCAATCGTTGAGTGAACTGTATCCTCTTT
GTGTTAGTTGACCTAAGCCGCACCATTACTGCTGGGGTAGGGCTCGGCCTCCGAACCGTACGTGA
GACGAGTTTCTGCCTCATACAGCTCGGCTCGGGCCGAAGACCGGGGGAAGTTTAGGAGAGATGGG
GAGACCCAGCAGCTGCCGGTCGGGGGGGGGATAAGCAGCTTGTGA
Right flanking sequence: Indices 229128 -- 229627
TCCCCCCCCCAAAAAAAAAACCAATCCTATAGCGCTAGCGCTTCGCGTTCTTTCTATTCCATCCC
ATTTCATTTCGGGATAGGCGGCTAATACTAATCTAATAAGTGAAGTAGTCGTCTGACCAATTGGC
TCGGACACCAGACCGCTCGTGCCCGCCCATTCTGTCTCGCCCTAAATGGAATGGCTCTCTTAGTT
ACGCTGCGCCCCGACCCGAGTCCCCACGTCCGCTCTTCTCCGCCCGCAACCCAAGAAGTTGGCTT
TGCCAACACAACATTAGGGCCGTCCCCTTCATTCTATGCTGACCCCGGCCCGGGGCTGGCTTTTT
GGGAAGCCCGTTCCCACCGCGCTCACGGCCCGGCTGGCCTGCCAGCGGTAGTGGAAATTATCCCG
TTCCCTGGTCAAAGACTTGGTTGGATGCGGGATCTACTCCACGAGGAGCGGTACGGACGTAGATG
ATATCATCACGACCTCTCTTTTCGTACCGCTAGGGATGCTTAACG
Found at i:286695 original size:18 final size:19
Alignment explanation
Indices: 286672--286707 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
286662 AAGAAACAAC
286672 CACCTGC-GTTTGGTGCAG
1 CACCTGCAGTTTGGTGCAG
*
286690 CACCTGCATTTTGGTGCA
1 CACCTGCAGTTTGGTGCA
286708 TTCTTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.31
Consensus pattern (19 bp):
CACCTGCAGTTTGGTGCAG
Left flanking sequence: Indices 286172 -- 286671
TTGCCAATAAGTGAAGGACTGGGCTTCCGCACTCGCTGCAGCCGAGCGCCTCGAAGTTCAGGCAT
CAGGTTGGACAAAGAAAAGAGAAGTCGAGTGGGCCTATATAACTCCAACGAAAAATAAAATTGGA
ATGGATACGGGACTGTGATGCGGCACTCGAACGAGACCGTAGTCTCGGGAGGAACCCCTAATCGT
ACATTTCCGTTTGCTTTTTGTTTGTAGTAAGGGGTAGACGAGACAAGGTTACGCGCTGGGTAGCG
CGTCTGTTTCGGGTACAGAAGCGACGAGGGGTGCTAACCCGGCCACCCAACCCAGCAGGTCAGGG
GCGGGCCATAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCCTGTGGTTACCGGATAATGGG
AATAACAAAGCAGAAATTTTGAAATGAGCACGAGATGTCAATATATGAATTGTTTCATTATCCGT
TATTTCTGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAAC
Right flanking sequence: Indices 286708 -- 287207
TTCTTCTTTCTTTCCTTGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTA
TTAACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGGACATGGTCTAATCATGAGGGTAGTAT
TTTATCATGGTGTCGGATCCCAAGTTTTTATGGATTCCTTCTTTGTTACCGGGGTCGACCCCAAA
GCCATAATGTATCAAAACGAGGAGGCCATAGAGAAACTTTTTTTTATTCCTTTGTCTCGAACTTC
GTGAAGAACTCCATTCTATCTCGCCCTCGTTACGAACAAAAAAGTGGGGCTGCGCACCAGTTGTA
CACTCCCTTCCTTACATCCCTTGTTGATTCTGAACTTCGTTCGCGAAGGAACCGGACTTTTGACG
GGCCAGCCCTTTTTTATGCGCCGCTTTCCCCTGAAAGGAAAATGAGCTTTGCTCCTCTGGGCGCT
AGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGATGAGTCCTTTG
Found at i:368916 original size:18 final size:18
Alignment explanation
Indices: 368895--368937 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
368885 CAACCTTGTT
368895 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
368913 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
368931 GACTATG
1 GACTATG
368938 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 368395 -- 368894
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGAAAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGGGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 368938 -- 369437
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTCAAAAAGGCGAGCACTGAAATGAGAAAGTAGACTCGTGACGCTGAACGACACATTCTAAA
ACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCA
TGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAGTGTCCGCCCCTTAGGTCGCCAAA
CAAACTACGACGAGAGTTTCGCCTTACTCTAACAAGTAAGCAAGTAAACTACCTTTTGAAGCGCC
AGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAG
GGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGAC
AGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACC
Found at i:415268 original size:14 final size:14
Alignment explanation
Indices: 415249--415275 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
415239 ATAATATCGA
415249 TTTATACAGATACG
1 TTTATACAGATACG
415263 TTTATACAGATAC
1 TTTATACAGATAC
415276 AGAAGAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
TTTATACAGATACG
Left flanking sequence: Indices 414749 -- 415248
GCATTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCCCCTTGCTTCTCTCATGTTACAA
TCCTCTTCCCGCGGAGCCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAAC
AGTTCATCACGGAAGAAAGGACTCACTGAGCCGAGATCACTAACTAATACTAATATAATAGAAAA
TGCTAATATAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCGCGGTTCCGTTGCTACCGCGGG
CTTTACGCAATCGATCGAATCATATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATC
GAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTC
GAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCGATTCGGGATT
TTCCTTGGGAGGTATCGGGAAGGAATTGGAATGGAATAATATCGA
Right flanking sequence: Indices 415276 -- 415602
AGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTACCTACGGGATAGGGATAGAGAAAGAGGAAA
AAACCGAAGATTTCAAATAGTACTTTTTTTTGATCGAAAAATCAATCTGATTTATTTCGTACCTT
TCGCTCAATGAGAAAATGAGTCAGATTCTACAGGATCAAACCTATGGCACTTAAGGAATGATGGA
AAAGAAGAAAATCAAAAAAGAAATAAAAAAAGAAAAGAGAGGGAAAAATAATAAAAAAAAGTTAA
AGTAAATAAAAATGAAGTAGAAGAGCCCAGATTCAAAATGAATGAAAACGTGACTGAATTGGTCC
TA
Done.