Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_027000
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 737091
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 4 of 4
Found at i:654916 original size:13 final size:13
Alignment explanation
Indices: 654898--654939 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
654888 TCTTGAATCC
654898 TCATTCCTCTGCT
1 TCATTCCTCTGCT
*
654911 TCATTCCTCTGCC
1 TCATTCCTCTGCT
654924 TCATTCCTCTGCT
1 TCATTCCTCTGCT
654937 TCA
1 TCA
654940 GGGAAAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.10, C:0.40, G:0.07, T:0.43
Consensus pattern (13 bp):
TCATTCCTCTGCT
Left flanking sequence: Indices 654398 -- 654897
AAGCCAGCCACGTCGGATGGAGTTTATCGTAACCCTCGTTACACAACTTGAGCACTTAAAAGACT
AGGGAAGGAAGGAACGAAGTGACTCACTTTTGCTCTGGATTGCCTAAGAGAGTTAGCTTACTCCT
CTATTACGAATGTTGCCTGGCTTACTGGCACGAGATGTAACAGAACTAGATAGGAGAAAGAGGCT
CAAAGGTCAAAGCAACGAAAACTTCTCCAACTACATCGGCGTAACAAAGAATAGAATCTCTCTTT
ACTTGATAGGTGATAGGCATACTGCGAGACTCTGACGGAAGGGTTGAAGAATGAATGGATGAGCT
AGTTCATTACCCAAGCCTACTCCGAATGACGAACAATAGGAAGTGGAACAACTCAAAAGGTAGTT
GGAGGAGAGAAGGAAGAATGACGATATGAGTGAAAGCACATGCTTAGATCACTGACAGAAAGGAA
ACTCTATTATCATTGCTCCCTTTCCTACGAGACTTTCTTGAATCC
Right flanking sequence: Indices 654940 -- 655439
GGGAAAGAATTACATTGAGAAGCAGCATCCGATTGAGTTCGAAGCTTTCAAAATGAGTTGAGTAG
CTGATGAGTTACTGAAAGAGCTTAGGAGTTCGGTTGCTGCTAGGATCCTAAACTGAGTAGAGTCA
GTTGGATCAGAACCAGCAACAGATCCTACTATTAGTTTATGGTCTCTGCCTTTCTTTACTATGTT
CCATGGATCTCGTGTAAAAAAAGAATCCAAATAGGCTGGCTGGTTTAAGGACGGAAGCTCCCGAA
CCCCGTCGCTCGTCTTATGGAGACGTGTGTGCCAGGGGAATGGAGGGCAGTGGGGAGATAAGCTC
TTTTGAGCTACAGTTTATGCTCCTATATTATATTGCGGATCTCCCGTTCTTCCATCAAATATTCT
GCTTTTTCCCGGATACTCGGGTTCAAATACCCACGGATTCCCTGTTTGCTTACTGGCTTCATGTA
ATTCATAAAAGACTCGTTTTCTCTCAGCCTCTTGTTCATATCTCT
Found at i:660885 original size:16 final size:16
Alignment explanation
Indices: 660864--660900 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
660854 GCAGAGGTAT
660864 TCCTTTGGGTATGAAA
1 TCCTTTGGGTATGAAA
660880 TCCTTTGGGTATGAAA
1 TCCTTTGGGTATGAAA
660896 TCCTT
1 TCCTT
660901 CTCCTTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.41
Consensus pattern (16 bp):
TCCTTTGGGTATGAAA
Left flanking sequence: Indices 660364 -- 660863
CACATCTGATTCGGGGGATTCCGGAGAAGGAGGTGCTGTGGCCCCGAACTTCCACATTCAACGAC
GAAGTGCCATCTTCATGTGAGTTCTAGTTCTTTAGCCTCTTAAAGATCACTAAAAGTCCAATGTT
GGTCTTCGACCTTAAGAAAGAGCCAGACAAACATTATATCTGCTATCTACTAGCTGCAGCTAAGA
GAGCGAAGCAAGTGCAGCAAGTGTAGTATACCGAAGGTACCGAATGAGTGAGCTAAGCGAACGAA
TGTAGAGAATCGTAGGTCATTTCTAGCCGTAGAGCGTTAAGCAAACACCCTCCTCCTCCATATTG
TCAAATCCATGCACTTTCGGGAAAGGAGAGAGTGAGGTTGGTCCGGGCTAATACCAATATAGCTC
ATAATGCTTTAGCATGCAAGCACGCCTAGCGAGAAAGGCACTGGGAGTTTCACTCATTGAAGGAG
CTTTTAAGCGACTGGTTAGAGAGGTATGAAATAAAGCAGAGGTAT
Right flanking sequence: Indices 660901 -- 661400
CTCCTTTTCAATCCTTTGAAAGCGCTAATTCAATAGCAGTCTTCCAATTAGATAGACTGAATAAA
TCTTAGTGTGGTTAAGCCTGGCCAGGGTCAGAAGTTGTTCCATCTCCGAGCACCTCCTCTCAAAA
CCCTAAGGTCGAGCACCTTCGCTCCTCTCCTTTTCAGTCGAGTCCTCCGTGCCTCTCACAAAGGT
CGAGTAATAAATAACCTTGGATGGCACAGTCGAGTCCTTCGTGCCTCTCCTTTTGTCGAGTATAT
AAATAACCTCTCACAAACAACGAGAAATAAATGACCTCTCCTGCCGATGTCACCACTGGTTCAGG
TACTTTCACCAGTACTTAAGCCAGCACCTAGCTATGCCCATGTCGTAGCTTCTGCGGCTACGAGA
AACCTCCGGACCCCAGCTATGGAAAAGGATCTTTTATTGTCCATGCCCTAGCCGTTGCTTCCGCT
GGATCAATGGGATCCCAATCTCGATTTCCTAGGTATGCTTGCCCT
Found at i:678822 original size:16 final size:16
Alignment explanation
Indices: 678801--678834 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
678791 AGAAGAAGGA
678801 TTCCTTTACTTGACTC
1 TTCCTTTACTTGACTC
678817 TTCCTTTACTTGACTC
1 TTCCTTTACTTGACTC
678833 TT
1 TT
678835 ATAGCATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.29, G:0.06, T:0.53
Consensus pattern (16 bp):
TTCCTTTACTTGACTC
Left flanking sequence: Indices 678301 -- 678800
TTGCTAAGAGATAAGACTGAAACTCCCGCTTCGCGACAACGAGTAAATAAATTACCTCTTACTGT
GATGAAAATACTTTGAATAATCAGTATAAGATTCAAGATCTCTTGATCCTATCCCGAGTTGGTCC
AATCTTATCTAGGAGCCGGACTTATTCAAGATAAGAAGTAAGAATGACCATAGATAGAGGATGAT
TTCACATTCTTGTTGTTCTTCTTCCCCATCTTCTAAGTGGAAAGAGCGCCAGTTGAGTGAGACAG
AGGTCTTGCAGAACCAATTAGAAGATGCAATAAATAAAGCAAAAAGATATGATATATTCTTTATC
TGTAATGATTGGAATGTTCCTATTGGTCAACAACCAACTAGACTACCTCTCTTGAAGAAGAAATC
TATAGCCTTTGCCTGCCTTTCTAGTATGACAAGATATCTAATATATATAAGAATCCTAGTTAGAA
AAAAAGTGATTCAAGCACTTAACATCCTCTTTCGAAGAAGAAGGA
Right flanking sequence: Indices 678835 -- 679334
ATAGCATTTCATTTTCTCAATTCAATGCCAAGAAGGTCCTGTCAACAGAAGTCCTCTCCGCTATT
TCCGTAGAACCCAGAGTAATACGTAATATGCGGTTGATCCTAGCTTGCCCCAATCTGAGTTCCTT
TCCTTAACCTTCGCCCTTTTCCACCTCTTTCTGCTTGTCGAGCGAGATCCAGCACTCTTGATAAG
CGAAGTCCAAAGCTAAAAAGCCGGCTCTGCTCACTCAAGGGAAAAAGAATCATTTTGCAAAGCGA
AAGGGAAAAAGAATCATTTTGCAAAGCGAAAGGGAAAAAGAATCATTTTGCAAAGCGATTCCAAA
TCTCTAAGAACTTGGATCTCTAAATAATCTGGACAAAGAAAAGCACGCCTGACGAGACCGGCCAA
TCTCCTTCTTTGGAGTCCTTTACTCCCCGACAAGAGCCCGCGATTCACTTTCCAATTTCTTTATA
ATGACTACTTCGGCTAGAAGAATCTTCCGCACAGAGTAGCCGCAT
Found at i:679100 original size:29 final size:29
Alignment explanation
Indices: 679066--679152 Score: 174
Period size: 29 Copynumber: 3.0 Consensus size: 29
679056 CTGCTCACTC
679066 AAGGGAAAAAGAATCATTTTGCAAAGCGA
1 AAGGGAAAAAGAATCATTTTGCAAAGCGA
679095 AAGGGAAAAAGAATCATTTTGCAAAGCGA
1 AAGGGAAAAAGAATCATTTTGCAAAGCGA
679124 AAGGGAAAAAGAATCATTTTGCAAAGCGA
1 AAGGGAAAAAGAATCATTTTGCAAAGCGA
679153 TTCCAAATCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.48, C:0.10, G:0.24, T:0.17
Consensus pattern (29 bp):
AAGGGAAAAAGAATCATTTTGCAAAGCGA
Left flanking sequence: Indices 678566 -- 679065
TTGCAGAACCAATTAGAAGATGCAATAAATAAAGCAAAAAGATATGATATATTCTTTATCTGTAA
TGATTGGAATGTTCCTATTGGTCAACAACCAACTAGACTACCTCTCTTGAAGAAGAAATCTATAG
CCTTTGCCTGCCTTTCTAGTATGACAAGATATCTAATATATATAAGAATCCTAGTTAGAAAAAAA
GTGATTCAAGCACTTAACATCCTCTTTCGAAGAAGAAGGATTCCTTTACTTGACTCTTCCTTTAC
TTGACTCTTATAGCATTTCATTTTCTCAATTCAATGCCAAGAAGGTCCTGTCAACAGAAGTCCTC
TCCGCTATTTCCGTAGAACCCAGAGTAATACGTAATATGCGGTTGATCCTAGCTTGCCCCAATCT
GAGTTCCTTTCCTTAACCTTCGCCCTTTTCCACCTCTTTCTGCTTGTCGAGCGAGATCCAGCACT
CTTGATAAGCGAAGTCCAAAGCTAAAAAGCCGGCTCTGCTCACTC
Right flanking sequence: Indices 679153 -- 679652
TTCCAAATCTCTAAGAACTTGGATCTCTAAATAATCTGGACAAAGAAAAGCACGCCTGACGAGAC
CGGCCAATCTCCTTCTTTGGAGTCCTTTACTCCCCGACAAGAGCCCGCGATTCACTTTCCAATTT
CTTTATAATGACTACTTCGGCTAGAAGAATCTTCCGCACAGAGTAGCCGCATAGCTGCTCCCTAG
CATTCTCAACTCCATATTCTGGTAGAATGGAAATCAAAAAATGCCGAGAGATATTATTCCTTTTA
AGCTTAATCGGTAGAATGGCCTTCTTTTGCTGGGCTTTCAAAAGAAGATCTAGTACTTCCTCCTT
GGAAAGTCGGCCAGAAATCAAAGGATCTAGATCATTCTGCAAGCATTCAATTAGAAGGGAGCTGC
CAGCCCTTCTTTGCTACAACAGGACAGATTAGATGATTCAAAAAGAGCCAAGAAAGCTTGGCCTT
ATACCTTCTCCACGTAAGACCACCGGCCGCCCAAATACCAAGACG
Found at i:690960 original size:29 final size:29
Alignment explanation
Indices: 690922--691026 Score: 201
Period size: 29 Copynumber: 3.6 Consensus size: 29
690912 TATGAAGGTG
690922 CTCGACTGAAGGGAGAGGTCATTTATATA
1 CTCGACTGAAGGGAGAGGTCATTTATATA
*
690951 CTCGACTGAAGGGAGAGGTTATTTATATA
1 CTCGACTGAAGGGAGAGGTCATTTATATA
690980 CTCGACTGAAGGGAGAGGTCATTTATATA
1 CTCGACTGAAGGGAGAGGTCATTTATATA
691009 CTCGACTGAAGGGAGAGG
1 CTCGACTGAAGGGAGAGG
691027 CACGAAGGTG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.26
Consensus pattern (29 bp):
CTCGACTGAAGGGAGAGGTCATTTATATA
Left flanking sequence: Indices 690422 -- 690921
AGAAATTATCTAGGACCCATTTCCACCTGTACATAGACTCTGCACATTCATTTGACCTCTTTATA
ACTTGGTAACAGTTGGCTTGGCCTTTTCTCTTTCTAGTTCTACATATCTGTAGACTTCACCTTTG
TAAGGACCTCTTATTACGTAGGTGATGTGATGCTATTAGGGCCTAAAGCGGCTTCTTACGCGTGT
TGGGGTCAGAGTTAGCGGGTAAATTGGACTTATTTCGACAATTATGGTGACTCAAAAAATCTCGT
ATGAGAAGAAATGAGAAATGATGGTTGGAAAGTAGTACGCCCGGTTCACGAGGCTCGGCCACTTT
GGATGCAATCATGTTCGTTAGGCTATATGCTTCACACTTGTGATTCGTAGAAATGTTCATTCGAT
CATCTCTCTCTTGAAGAAAGGAAGTTGGCGCCAGAGTCGTTTCCGCCCAAAGCGCTTTAGCCAGT
GAGAAAAGGTCTCTTCCTTTTGAAAAAGGTAGAGGTATGAAGGTG
Right flanking sequence: Indices 691027 -- 691526
CACGAAGGTGTGGATCAGGTCCGTCAGGCGATCCCGCGACAGCCGGTCACCCAACCCAGCAGGTC
AGGGGCCGGCCATACCATAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCCTGTGGTTACCG
GATGATGGAAATAACTAAGTCTCAATTTGGAAAAAAGCATGAAATGTCAATATATGAATTCTTTC
ATTATTCGTTATTTTTGGGTCTTTTCGTTGCATTCACTTACAACAAGAAAGAACCCCCAGCGTTT
GGCGCAGCACCTGCATTTTGGTGCATTCTTCTTTCTTTCCTTGGTCTTTCGTTCCGTCATATTCC
TAATAACTTATCCAATTACAATGTATTAACCGCTAATGCACCTTTCTTTTATCAAATATCAGGGA
CATGGTCTAATCATGAGGGTAGTATTTTATCATGGTGTCGGATCCCAAGTTTTTATGGATTCCTT
CTTTGTTACCGGGGTCGCCCCAAAAGCCATAATGTCTCAAAACGA
Found at i:695454 original size:30 final size:30
Alignment explanation
Indices: 695418--695510 Score: 117
Period size: 30 Copynumber: 3.3 Consensus size: 30
695408 TCCTCCCGAG
695418 ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
1 ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
* *
695448 ACTTCTCAA--A-G---AGGTCTTGTTGAG
1 ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
695472 ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
1 ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
*
695502 ACTTATCAA
1 ACTTCTCAA
695511 CAAGGAGGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
24 20 0.38
26 1 0.02
27 2 0.04
28 1 0.02
30 28 0.54
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (30 bp):
ACTTCTCAAGGAGGTCTAGGTCTTGCTGAT
Left flanking sequence: Indices 694918 -- 695417
ATTTATTCTATTTCTTCGCTTCGGTTCATGTTCATTTCAAAACTTGGATCGGTACACGCAAGAAA
TAGGCTAATTCAGCAGCCTTTTGCTCCATTTCGCGTGGAGTCAAATTCTCATCAGTACGGATCAA
GGGAAGGGCCCCCTGGCCCCGTATTTCCATATAAAGGATACGACGAACAGAAAAGCCCTCTTTAG
CTTCGATTCTGATAGACTGAATATCTTTCTGCAGGAATCGTAGGAAGATCCTCAGATTTCTTCCA
GGGAATCCCCAACGAAAAAGACACACTATTCCTTCTTTTCTATCGAATTGTCATTTTTCTTTGTC
ATCCTCAAGGAATTGGTTTTCAGGAACTTTTCCCGTCTTCTGTCTAACCCATTCGCGATAGTCGC
CCTCCAAAGCAACTCGCTCAATACTTTTTATACTAAGTTCCAAGCGTCCTTGGACAACTCAGAGA
GAACTTTCCGATACTTCTCCAACTTCGATAGGACTTCCTCCCGAG
Right flanking sequence: Indices 695511 -- 696010
CAAGGAGGTTCTATTTCTCAAGGAGGTCTTGCTGAGACTTCTCAAGGACTGCGTACCTGAGACTT
ACGTTGGAGTTCGAGTTCCTCCAACTTCGCAAGGAGTTCGTGATGAAACTCGTCAGGGAGTTCCT
TCAACTTCTCAAGGAGTTTTTCCTCAGACTCATTAGGGAGAACTTCCGGATATACCTGAAGGATT
TGTTCCCTAAACTTAGACGAACCCCCTTCCTTAGTTTTCTTTTCTGGAGCTCTCTCCCTTTCCCC
AGGATCCCTGGCACTTTTGATATAAATCATATAAATCCAAATTCTCGCGTAGAATAGCAGGATAT
GTTAGATTACAAGGGGCAGTCAATAGGCTTCGATTAAGCTCTGAATAATTACGAATCGGAATCCT
ATCCCCCCTTTTGCCATAAAGACCCAAACTGAAGAATTTGTGTCTCAATTGATCATTTTGAACTA
AAAGAAAACTCTTTGGTGGGATAGGCACGCTATGTATAATATTTG
Found at i:695475 original size:24 final size:24
Alignment explanation
Indices: 695435--695488 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
695425 AAGGAGGTCT
*
695435 AGGTCTTGCTGATACTTCTCAAAG
1 AGGTCTTGCTGAGACTTCTCAAAG
* *
695459 AGGTCTTGTTGAGACTTCTCAAGG
1 AGGTCTTGCTGAGACTTCTCAAAG
695483 AGGTCT
1 AGGTCT
695489 AGGTCTTGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (24 bp):
AGGTCTTGCTGAGACTTCTCAAAG
Left flanking sequence: Indices 694935 -- 695434
GCTTCGGTTCATGTTCATTTCAAAACTTGGATCGGTACACGCAAGAAATAGGCTAATTCAGCAGC
CTTTTGCTCCATTTCGCGTGGAGTCAAATTCTCATCAGTACGGATCAAGGGAAGGGCCCCCTGGC
CCCGTATTTCCATATAAAGGATACGACGAACAGAAAAGCCCTCTTTAGCTTCGATTCTGATAGAC
TGAATATCTTTCTGCAGGAATCGTAGGAAGATCCTCAGATTTCTTCCAGGGAATCCCCAACGAAA
AAGACACACTATTCCTTCTTTTCTATCGAATTGTCATTTTTCTTTGTCATCCTCAAGGAATTGGT
TTTCAGGAACTTTTCCCGTCTTCTGTCTAACCCATTCGCGATAGTCGCCCTCCAAAGCAACTCGC
TCAATACTTTTTATACTAAGTTCCAAGCGTCCTTGGACAACTCAGAGAGAACTTTCCGATACTTC
TCCAACTTCGATAGGACTTCCTCCCGAGACTTCTCAAGGAGGTCT
Right flanking sequence: Indices 695489 -- 695988
AGGTCTTGCTGATACTTATCAACAAGGAGGTTCTATTTCTCAAGGAGGTCTTGCTGAGACTTCTC
AAGGACTGCGTACCTGAGACTTACGTTGGAGTTCGAGTTCCTCCAACTTCGCAAGGAGTTCGTGA
TGAAACTCGTCAGGGAGTTCCTTCAACTTCTCAAGGAGTTTTTCCTCAGACTCATTAGGGAGAAC
TTCCGGATATACCTGAAGGATTTGTTCCCTAAACTTAGACGAACCCCCTTCCTTAGTTTTCTTTT
CTGGAGCTCTCTCCCTTTCCCCAGGATCCCTGGCACTTTTGATATAAATCATATAAATCCAAATT
CTCGCGTAGAATAGCAGGATATGTTAGATTACAAGGGGCAGTCAATAGGCTTCGATTAAGCTCTG
AATAATTACGAATCGGAATCCTATCCCCCCTTTTGCCATAAAGACCCAAACTGAAGAATTTGTGT
CTCAATTGATCATTTTGAACTAAAAGAAAACTCTTTGGTGGGATA
Found at i:695656 original size:21 final size:21
Alignment explanation
Indices: 695588--695658 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
695578 GTTGGAGTTC
* *
695588 GAGTTCCTCCAACTTCGCAAG
1 GAGTTCCTTCAACTTCTCAAG
* * *
695609 GAGTTCGTGATGAAAC-TCGTCAGG
1 GAGTTCCT--T-CAACTTC-TCAAG
695633 GAGTTCCTTCAACTTCTCAAG
1 GAGTTCCTTCAACTTCTCAAG
695654 GAGTT
1 GAGTT
695659 TTTCCTCAGA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 19 0.51
22 3 0.08
23 2 0.05
24 13 0.35
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (21 bp):
GAGTTCCTTCAACTTCTCAAG
Left flanking sequence: Indices 695088 -- 695587
CGACGAACAGAAAAGCCCTCTTTAGCTTCGATTCTGATAGACTGAATATCTTTCTGCAGGAATCG
TAGGAAGATCCTCAGATTTCTTCCAGGGAATCCCCAACGAAAAAGACACACTATTCCTTCTTTTC
TATCGAATTGTCATTTTTCTTTGTCATCCTCAAGGAATTGGTTTTCAGGAACTTTTCCCGTCTTC
TGTCTAACCCATTCGCGATAGTCGCCCTCCAAAGCAACTCGCTCAATACTTTTTATACTAAGTTC
CAAGCGTCCTTGGACAACTCAGAGAGAACTTTCCGATACTTCTCCAACTTCGATAGGACTTCCTC
CCGAGACTTCTCAAGGAGGTCTAGGTCTTGCTGATACTTCTCAAAGAGGTCTTGTTGAGACTTCT
CAAGGAGGTCTAGGTCTTGCTGATACTTATCAACAAGGAGGTTCTATTTCTCAAGGAGGTCTTGC
TGAGACTTCTCAAGGACTGCGTACCTGAGACTTACGTTGGAGTTC
Right flanking sequence: Indices 695659 -- 696158
TTTCCTCAGACTCATTAGGGAGAACTTCCGGATATACCTGAAGGATTTGTTCCCTAAACTTAGAC
GAACCCCCTTCCTTAGTTTTCTTTTCTGGAGCTCTCTCCCTTTCCCCAGGATCCCTGGCACTTTT
GATATAAATCATATAAATCCAAATTCTCGCGTAGAATAGCAGGATATGTTAGATTACAAGGGGCA
GTCAATAGGCTTCGATTAAGCTCTGAATAATTACGAATCGGAATCCTATCCCCCCTTTTGCCATA
AAGACCCAAACTGAAGAATTTGTGTCTCAATTGATCATTTTGAACTAAAAGAAAACTCTTTGGTG
GGATAGGCACGCTATGTATAATATTTGAACTCTCAATAGTTACATAAAAATCTATATAACATAGA
AAGGCAGGCTGCCCGTGGCGTGTTCGTGCGGGATGAACCAAGTCCTCATTGAATTTGCTTTTTCC
GTTGACTCGCACATGTTCTGCAGTACCTCCTGTGAATACTCCCCC
Found at i:696547 original size:14 final size:14
Alignment explanation
Indices: 696528--696556 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
696518 CAGAAGCAAG
696528 TCAAATACGTTGGA
1 TCAAATACGTTGGA
696542 TCAAATACGTTGGA
1 TCAAATACGTTGGA
696556 T
1 T
696557 ATCTCACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (14 bp):
TCAAATACGTTGGA
Left flanking sequence: Indices 696028 -- 696527
TAAAAATCTATATAACATAGAAAGGCAGGCTGCCCGTGGCGTGTTCGTGCGGGATGAACCAAGTC
CTCATTGAATTTGCTTTTTCCGTTGACTCGCACATGTTCTGCAGTACCTCCTGTGAATACTCCCC
CGGTATGAAAAGTTCTTAATGTTAGCTGAGTCCCCGATTCTCCAATGGATTGGCCCGCAAGAAGG
CATTCATTGCATTCATTCATTGAATAATCAGGCGGAGGAGGCGTATTGAAAGAGCTCCTGCCAGA
TCGCTACACAACACAAGCCACCGCTCGAGACCGAAGGTAGAGGTTATTTATATACTCTAAGTATA
GAAGAAGCGACCAAAGGAAGAGGTGCGAAGCACTCGAGCATAGCGAGAGGGGCAAAGGAACGAGA
CTGTGCCGGAGAGGTGCGAAGCGCTTGCCAGAGGTATTGTATTGCCCTGTGGGTTCACTACACAG
GGCAATACAATACCGGTCAACACCTTCTTACTTCTCAGAAGCAAG
Right flanking sequence: Indices 696557 -- 697056
ATCTCACAAGTAACAAGTATATGAATTACCTCCCCTGATTGTCGAGCCCCTTCCGACCTCTTCTT
TCATTCAGTCGAGTAGGTTCCTACCTCTCCTGGTACTGGAAAGTCAACCTATTCCTTTAGGTCTT
ATTAATTGGTATCTCCTCCTAATGGTCTTAGTCAACACTTCCTAACTTGAGGAAAGTACTTTAGT
TTCCTACCTATACTTGAGTAAAGAAAGAAACTAGTAAAGAAAGGAAATAGCTCCTAAAACCTAAG
CAAACAGCTCCTAAAATCAAAGCAAATAAGACTCTACCTCTTGGAATTCGAATTTGGAAATACTA
TTTGGGTATGCAATCGAATACCAATCCTTACCTAGTTCTTATACCTAGGAAAACATAAGGAAAGA
AACTGCTCCTCTGCAGGTCAACACTTGAGAACTCTTTATTCCCGCAGGTCGAACAATTCATTTTC
ATTACGTCTTCCCTTCCCTAGATTCTATTGAATAATCAATTACCT
Found at i:696825 original size:22 final size:22
Alignment explanation
Indices: 696791--696842 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
696781 ACTAGTAAAG
* *
696791 AAAGGAAATAGCTCCTAAAACC
1 AAAGCAAACAGCTCCTAAAACC
* *
696813 TAAGCAAACAGCTCCTAAAATC
1 AAAGCAAACAGCTCCTAAAACC
696835 AAAGCAAA
1 AAAGCAAA
696843 TAAGACTCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.52, C:0.23, G:0.12, T:0.13
Consensus pattern (22 bp):
AAAGCAAACAGCTCCTAAAACC
Left flanking sequence: Indices 696291 -- 696790
CTACACAACACAAGCCACCGCTCGAGACCGAAGGTAGAGGTTATTTATATACTCTAAGTATAGAA
GAAGCGACCAAAGGAAGAGGTGCGAAGCACTCGAGCATAGCGAGAGGGGCAAAGGAACGAGACTG
TGCCGGAGAGGTGCGAAGCGCTTGCCAGAGGTATTGTATTGCCCTGTGGGTTCACTACACAGGGC
AATACAATACCGGTCAACACCTTCTTACTTCTCAGAAGCAAGTCAAATACGTTGGATCAAATACG
TTGGATATCTCACAAGTAACAAGTATATGAATTACCTCCCCTGATTGTCGAGCCCCTTCCGACCT
CTTCTTTCATTCAGTCGAGTAGGTTCCTACCTCTCCTGGTACTGGAAAGTCAACCTATTCCTTTA
GGTCTTATTAATTGGTATCTCCTCCTAATGGTCTTAGTCAACACTTCCTAACTTGAGGAAAGTAC
TTTAGTTTCCTACCTATACTTGAGTAAAGAAAGAAACTAGTAAAG
Right flanking sequence: Indices 696843 -- 697342
TAAGACTCTACCTCTTGGAATTCGAATTTGGAAATACTATTTGGGTATGCAATCGAATACCAATC
CTTACCTAGTTCTTATACCTAGGAAAACATAAGGAAAGAAACTGCTCCTCTGCAGGTCAACACTT
GAGAACTCTTTATTCCCGCAGGTCGAACAATTCATTTTCATTACGTCTTCCCTTCCCTAGATTCT
ATTGAATAATCAATTACCTGAAAAGTATACCTGTAAAGTCGGACTAATCCTAATGGTCTGTATTG
GTATTTGGTATATCCTCCTAATGGTATTTTGTACTCGACCAAAGGGAAGAGGTCAACACTTCCTA
CCTATACTGGAGGAAAGCAAGAAAATGGCTCCTAAAACCAAAGCAAATACAACAGATAAGGTAAC
TGGTTGCCCACTCTCTTTCCCACCTCTTACAAGCTAATTATCCTACCTCTCAGTTCATATGACAG
GTTATGCATATGAGTAACTAACCCTATATGACATGGATAGAGAGC
Found at i:697497 original size:9 final size:9
Alignment explanation
Indices: 697483--697529 Score: 69
Period size: 9 Copynumber: 5.2 Consensus size: 9
697473 CCTCATCCTC
697483 AGAATAGTT
1 AGAATAGTT
697492 AGAATAGTT
1 AGAATAGTT
*
697501 AGAATA-TGA
1 AGAATAGT-T
697510 AGAATAGTT
1 AGAATAGTT
697519 AGAATAGTT
1 AGAATAGTT
697528 AG
1 AG
697530 TTTATGGGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.94
10 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (9 bp):
AGAATAGTT
Left flanking sequence: Indices 696983 -- 697482
TATTCCCGCAGGTCGAACAATTCATTTTCATTACGTCTTCCCTTCCCTAGATTCTATTGAATAAT
CAATTACCTGAAAAGTATACCTGTAAAGTCGGACTAATCCTAATGGTCTGTATTGGTATTTGGTA
TATCCTCCTAATGGTATTTTGTACTCGACCAAAGGGAAGAGGTCAACACTTCCTACCTATACTGG
AGGAAAGCAAGAAAATGGCTCCTAAAACCAAAGCAAATACAACAGATAAGGTAACTGGTTGCCCA
CTCTCTTTCCCACCTCTTACAAGCTAATTATCCTACCTCTCAGTTCATATGACAGGTTATGCATA
TGAGTAACTAACCCTATATGACATGGATAGAGAGCATTTGAAGGACAGTGGAGACCACCTCATTA
CTGTTTGCCTATTTAGCCTAATTGAATAGTGCCTTAAACACAACTTTTCCTGTACAACTACTGAC
TTATTGTAGCTATACCTCTTCATAGTTAGAAATATCCTCATCCTC
Right flanking sequence: Indices 697530 -- 698029
TTTATGGGCTTGACTCTGGATAGTTTTACATCAAACGGTCTACCCTCAGAATAGTTCTCAAGTTG
TTGATCTCTCTGATGAAGGAATACTTCTTATTTAAGGAAAAGGAACGGACGAGTTACCCCATACA
GAGTATCCGCTACCCTCGTGCCTTCTGTCACTCACTCATTAGTATTAGTGTAAACTTCCTTTGTT
GAACAACTAGATTGGTTAGCTTCCTTGGTTGAGTAGCTTACATTGGCTCTCTTGATTTATTTATT
AGCTGCAGTATTCTCAATCTTAGGTTGCCGGTCGGCTCACAAGAGAAAAGAAGGAATAACCGATT
AAACAGACTTTCACCCCAGTTGTGAACAATCCGTTATAGTTTTATCCATCCGAGCACTCTATCCA
CCATCTAACCTATACTTTTCTCAGCAAAACATATTACTTCTAAACTAGCAACTATTAGCTTACGG
AACCTAGTGCTTATCTTAACAAACCCTAGTACTTCCTTTCGTAAC
Found at i:698797 original size:14 final size:14
Alignment explanation
Indices: 698778--698820 Score: 86
Period size: 14 Copynumber: 3.1 Consensus size: 14
698768 CTTGCCGGGA
698778 AACCTTACTAACTC
1 AACCTTACTAACTC
698792 AACCTTACTAACTC
1 AACCTTACTAACTC
698806 AACCTTACTAACTC
1 AACCTTACTAACTC
698820 A
1 A
698821 GTAGTTTACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (14 bp):
AACCTTACTAACTC
Left flanking sequence: Indices 698278 -- 698777
AAATCTGCATTGTCCCATTGTATTCGAAATCTTAGAAGGCTAGCTCCTTACCTGTAATACTCGCG
CAATACATTTCCTTACTACCCATTTGAGAACCATGGACTAAGTATACTAACTAGTGCAACGAAAC
TCACTACCTAGAGAACTCGTTTCTCCTATAATCAGGAACAAAGGAAAGAAACCTCATATGGACTA
GATCAATCGAATAGATTGTTATATCCTTATCCTATACCTCGAACTACCAACTCGGGAAGGGAACT
TTGTAGCTTCTAAGATAGACTACAGAACAAAGTAGCAAAGTTGATAGACGAAGTTTGGAACAAAG
TAGCTTCGTTGATAGACTTTGGTAAAGTCGCTTCTAAGATAGACTACAGAACAAAGGAACAAAAC
GGACTATATTACCTATAACTAGAACTATCACTAGAACAAATCACTTACTATCACAAATCACTTGA
TTATAACTAGGTATCTGAGTACTAAGCCAAACTTGCTTGCCGGGA
Right flanking sequence: Indices 698821 -- 699320
GTAGTTTACGTGTTCCCTACTTGCTTTGGTATAACTAACTAAACGGGTATCTTTCTAAACTAATA
GAAACTAGCTTACTACTGAGAAACGGCAGGAACTAGCTGAAATGATTAGCTGCAGTTACCTGTAA
TACCCTCTCTTTCTTTAGTAGCTACAGTTCCCTCTTCGCCGGGGGATTAGCTACAGGTATGAGAA
ATCTTATAAGGCTAGCTACAGGTATGAGAAATCTTAGAAGCCTAGCTGACATACCGAGTTAGCTG
ACATACCGAGTTGAGTTACCTATCTATCGAGTTACCCATCTATTGGACTAGTTGGGTGACCTACC
TTGCCTCATAACTAGCTGACATTGACTAGCTGACAAAGAAACCTCATAACTAGCTGACAAAGAAA
CCTCATAACTAGCTGACAGTTACCCTACATACTCGAGACATTTCCTTACGGCACCATTTCCTAAT
CATTGGAGTTGTATATTAACTAACCGTTCTAACTAACCATTTTAG
Found at i:699034 original size:30 final size:30
Alignment explanation
Indices: 698998--699062 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
698988 GCCGGGGGAT
* *
698998 TAGCTACAGGTATGAGAAATCTTATAAGGC
1 TAGCTACAGGTATGAGAAATCTTAGAAGCC
699028 TAGCTACAGGTATGAGAAATCTTAGAAGCC
1 TAGCTACAGGTATGAGAAATCTTAGAAGCC
699058 TAGCT
1 TAGCT
699063 GACATACCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (30 bp):
TAGCTACAGGTATGAGAAATCTTAGAAGCC
Left flanking sequence: Indices 698498 -- 698997
CTTATCCTATACCTCGAACTACCAACTCGGGAAGGGAACTTTGTAGCTTCTAAGATAGACTACAG
AACAAAGTAGCAAAGTTGATAGACGAAGTTTGGAACAAAGTAGCTTCGTTGATAGACTTTGGTAA
AGTCGCTTCTAAGATAGACTACAGAACAAAGGAACAAAACGGACTATATTACCTATAACTAGAAC
TATCACTAGAACAAATCACTTACTATCACAAATCACTTGATTATAACTAGGTATCTGAGTACTAA
GCCAAACTTGCTTGCCGGGAAACCTTACTAACTCAACCTTACTAACTCAACCTTACTAACTCAGT
AGTTTACGTGTTCCCTACTTGCTTTGGTATAACTAACTAAACGGGTATCTTTCTAAACTAATAGA
AACTAGCTTACTACTGAGAAACGGCAGGAACTAGCTGAAATGATTAGCTGCAGTTACCTGTAATA
CCCTCTCTTTCTTTAGTAGCTACAGTTCCCTCTTCGCCGGGGGAT
Right flanking sequence: Indices 699063 -- 699562
GACATACCGAGTTAGCTGACATACCGAGTTGAGTTACCTATCTATCGAGTTACCCATCTATTGGA
CTAGTTGGGTGACCTACCTTGCCTCATAACTAGCTGACATTGACTAGCTGACAAAGAAACCTCAT
AACTAGCTGACAAAGAAACCTCATAACTAGCTGACAGTTACCCTACATACTCGAGACATTTCCTT
ACGGCACCATTTCCTAATCATTGGAGTTGTATATTAACTAACCGTTCTAACTAACCATTTTAGAA
GCATTTTAGAACCATTATAGACCCTTTTGAGAACCATTTTATAACCATTTCCTATCCTAAGTATA
CTTATACTACCTAGTGCAACGAAACAAACTAGCTAGAGAACTCATTTCTCATTTCTCCTATAATC
AGGAACAAAGGAAAGGAAGAAACCTCATATGGACTATACGCCGATATAACAGCTCTTTCCTCCGT
TTATCTGTTTCGTTGCTTATGCAACACTGAGCAACGCTTCGTTGA
Found at i:699080 original size:17 final size:17
Alignment explanation
Indices: 699058--699092 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
699048 CTTAGAAGCC
699058 TAGCTGACATACCGAGT
1 TAGCTGACATACCGAGT
699075 TAGCTGACATACCGAGT
1 TAGCTGACATACCGAGT
699092 T
1 T
699093 GAGTTACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (17 bp):
TAGCTGACATACCGAGT
Left flanking sequence: Indices 698558 -- 699057
TACAGAACAAAGTAGCAAAGTTGATAGACGAAGTTTGGAACAAAGTAGCTTCGTTGATAGACTTT
GGTAAAGTCGCTTCTAAGATAGACTACAGAACAAAGGAACAAAACGGACTATATTACCTATAACT
AGAACTATCACTAGAACAAATCACTTACTATCACAAATCACTTGATTATAACTAGGTATCTGAGT
ACTAAGCCAAACTTGCTTGCCGGGAAACCTTACTAACTCAACCTTACTAACTCAACCTTACTAAC
TCAGTAGTTTACGTGTTCCCTACTTGCTTTGGTATAACTAACTAAACGGGTATCTTTCTAAACTA
ATAGAAACTAGCTTACTACTGAGAAACGGCAGGAACTAGCTGAAATGATTAGCTGCAGTTACCTG
TAATACCCTCTCTTTCTTTAGTAGCTACAGTTCCCTCTTCGCCGGGGGATTAGCTACAGGTATGA
GAAATCTTATAAGGCTAGCTACAGGTATGAGAAATCTTAGAAGCC
Right flanking sequence: Indices 699093 -- 699592
GAGTTACCTATCTATCGAGTTACCCATCTATTGGACTAGTTGGGTGACCTACCTTGCCTCATAAC
TAGCTGACATTGACTAGCTGACAAAGAAACCTCATAACTAGCTGACAAAGAAACCTCATAACTAG
CTGACAGTTACCCTACATACTCGAGACATTTCCTTACGGCACCATTTCCTAATCATTGGAGTTGT
ATATTAACTAACCGTTCTAACTAACCATTTTAGAAGCATTTTAGAACCATTATAGACCCTTTTGA
GAACCATTTTATAACCATTTCCTATCCTAAGTATACTTATACTACCTAGTGCAACGAAACAAACT
AGCTAGAGAACTCATTTCTCATTTCTCCTATAATCAGGAACAAAGGAAAGGAAGAAACCTCATAT
GGACTATACGCCGATATAACAGCTCTTTCCTCCGTTTATCTGTTTCGTTGCTTATGCAACACTGA
GCAACGCTTCGTTGACTATCTATCTGATCTATCTACCTAGCTGAC
Found at i:699114 original size:16 final size:16
Alignment explanation
Indices: 699093--699123 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
699083 ATACCGAGTT
*
699093 GAGTTACCTATCTATC
1 GAGTTACCCATCTATC
699109 GAGTTACCCATCTAT
1 GAGTTACCCATCTAT
699124 TGGACTAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (16 bp):
GAGTTACCCATCTATC
Left flanking sequence: Indices 698593 -- 699092
TGGAACAAAGTAGCTTCGTTGATAGACTTTGGTAAAGTCGCTTCTAAGATAGACTACAGAACAAA
GGAACAAAACGGACTATATTACCTATAACTAGAACTATCACTAGAACAAATCACTTACTATCACA
AATCACTTGATTATAACTAGGTATCTGAGTACTAAGCCAAACTTGCTTGCCGGGAAACCTTACTA
ACTCAACCTTACTAACTCAACCTTACTAACTCAGTAGTTTACGTGTTCCCTACTTGCTTTGGTAT
AACTAACTAAACGGGTATCTTTCTAAACTAATAGAAACTAGCTTACTACTGAGAAACGGCAGGAA
CTAGCTGAAATGATTAGCTGCAGTTACCTGTAATACCCTCTCTTTCTTTAGTAGCTACAGTTCCC
TCTTCGCCGGGGGATTAGCTACAGGTATGAGAAATCTTATAAGGCTAGCTACAGGTATGAGAAAT
CTTAGAAGCCTAGCTGACATACCGAGTTAGCTGACATACCGAGTT
Right flanking sequence: Indices 699124 -- 699623
TGGACTAGTTGGGTGACCTACCTTGCCTCATAACTAGCTGACATTGACTAGCTGACAAAGAAACC
TCATAACTAGCTGACAAAGAAACCTCATAACTAGCTGACAGTTACCCTACATACTCGAGACATTT
CCTTACGGCACCATTTCCTAATCATTGGAGTTGTATATTAACTAACCGTTCTAACTAACCATTTT
AGAAGCATTTTAGAACCATTATAGACCCTTTTGAGAACCATTTTATAACCATTTCCTATCCTAAG
TATACTTATACTACCTAGTGCAACGAAACAAACTAGCTAGAGAACTCATTTCTCATTTCTCCTAT
AATCAGGAACAAAGGAAAGGAAGAAACCTCATATGGACTATACGCCGATATAACAGCTCTTTCCT
CCGTTTATCTGTTTCGTTGCTTATGCAACACTGAGCAACGCTTCGTTGACTATCTATCTGATCTA
TCTACCTAGCTGACAAACAAAAGAACTAGCTCACCGGAAACTACA
Found at i:699202 original size:24 final size:24
Alignment explanation
Indices: 699170--699228 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
699160 GCTGACATTG
699170 ACTAGCTGACAAAGAAACCTCATA
1 ACTAGCTGACAAAGAAACCTCATA
699194 ACTAGCTGACAAAGAAACCTCATA
1 ACTAGCTGACAAAGAAACCTCATA
699218 ACTAGCTGACA
1 ACTAGCTGACA
699229 GTTACCCTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.44, C:0.25, G:0.14, T:0.17
Consensus pattern (24 bp):
ACTAGCTGACAAAGAAACCTCATA
Left flanking sequence: Indices 698670 -- 699169
ACTATATTACCTATAACTAGAACTATCACTAGAACAAATCACTTACTATCACAAATCACTTGATT
ATAACTAGGTATCTGAGTACTAAGCCAAACTTGCTTGCCGGGAAACCTTACTAACTCAACCTTAC
TAACTCAACCTTACTAACTCAGTAGTTTACGTGTTCCCTACTTGCTTTGGTATAACTAACTAAAC
GGGTATCTTTCTAAACTAATAGAAACTAGCTTACTACTGAGAAACGGCAGGAACTAGCTGAAATG
ATTAGCTGCAGTTACCTGTAATACCCTCTCTTTCTTTAGTAGCTACAGTTCCCTCTTCGCCGGGG
GATTAGCTACAGGTATGAGAAATCTTATAAGGCTAGCTACAGGTATGAGAAATCTTAGAAGCCTA
GCTGACATACCGAGTTAGCTGACATACCGAGTTGAGTTACCTATCTATCGAGTTACCCATCTATT
GGACTAGTTGGGTGACCTACCTTGCCTCATAACTAGCTGACATTG
Right flanking sequence: Indices 699229 -- 699728
GTTACCCTACATACTCGAGACATTTCCTTACGGCACCATTTCCTAATCATTGGAGTTGTATATTA
ACTAACCGTTCTAACTAACCATTTTAGAAGCATTTTAGAACCATTATAGACCCTTTTGAGAACCA
TTTTATAACCATTTCCTATCCTAAGTATACTTATACTACCTAGTGCAACGAAACAAACTAGCTAG
AGAACTCATTTCTCATTTCTCCTATAATCAGGAACAAAGGAAAGGAAGAAACCTCATATGGACTA
TACGCCGATATAACAGCTCTTTCCTCCGTTTATCTGTTTCGTTGCTTATGCAACACTGAGCAACG
CTTCGTTGACTATCTATCTGATCTATCTACCTAGCTGACAAACAAAAGAACTAGCTCACCGGAAA
CTACATTCCTAGCTAGCTACCTATTGGACTATCCGGCACTAGTTGACTTCTAACTACGGACTATG
TTCTTACCTATACTAGCTTCTGAGAAACTAACCATTTCCCATTTC
Found at i:699329 original size:11 final size:11
Alignment explanation
Indices: 699310--699372 Score: 74
Period size: 11 Copynumber: 5.7 Consensus size: 11
699300 CGTTCTAACT
699310 AACCATTTTAG
1 AACCATTTTAG
*
699321 AAGCATTTTAG
1 AACCATTTTAG
*
699332 AACCATTATAG
1 AACCATTTTAG
*
699343 -ACCCTTTTGAG
1 AACCATTTT-AG
*
699354 AACCATTTTAT
1 AACCATTTTAG
699365 AACCATTT
1 AACCATTT
699373 CCTATCCTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
10 6 0.14
11 30 0.70
12 7 0.16
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (11 bp):
AACCATTTTAG
Left flanking sequence: Indices 698810 -- 699309
TTACTAACTCAGTAGTTTACGTGTTCCCTACTTGCTTTGGTATAACTAACTAAACGGGTATCTTT
CTAAACTAATAGAAACTAGCTTACTACTGAGAAACGGCAGGAACTAGCTGAAATGATTAGCTGCA
GTTACCTGTAATACCCTCTCTTTCTTTAGTAGCTACAGTTCCCTCTTCGCCGGGGGATTAGCTAC
AGGTATGAGAAATCTTATAAGGCTAGCTACAGGTATGAGAAATCTTAGAAGCCTAGCTGACATAC
CGAGTTAGCTGACATACCGAGTTGAGTTACCTATCTATCGAGTTACCCATCTATTGGACTAGTTG
GGTGACCTACCTTGCCTCATAACTAGCTGACATTGACTAGCTGACAAAGAAACCTCATAACTAGC
TGACAAAGAAACCTCATAACTAGCTGACAGTTACCCTACATACTCGAGACATTTCCTTACGGCAC
CATTTCCTAATCATTGGAGTTGTATATTAACTAACCGTTCTAACT
Right flanking sequence: Indices 699373 -- 699872
CCTATCCTAAGTATACTTATACTACCTAGTGCAACGAAACAAACTAGCTAGAGAACTCATTTCTC
ATTTCTCCTATAATCAGGAACAAAGGAAAGGAAGAAACCTCATATGGACTATACGCCGATATAAC
AGCTCTTTCCTCCGTTTATCTGTTTCGTTGCTTATGCAACACTGAGCAACGCTTCGTTGACTATC
TATCTGATCTATCTACCTAGCTGACAAACAAAAGAACTAGCTCACCGGAAACTACATTCCTAGCT
AGCTACCTATTGGACTATCCGGCACTAGTTGACTTCTAACTACGGACTATGTTCTTACCTATACT
AGCTTCTGAGAAACTAACCATTTCCCATTTCCTAAGGATAGTGATAGTAACCAACTACCGGCAGT
ATATGAACTAGTAGAAACAAGAGAGAGAAATCCCAGATCTAATCAGGGACTCAGGAACAAAGTAT
ATAAGTTGATAGACGAAGGAACAAAGTAGCTTCTATTCTAAGATA
Found at i:699911 original size:29 final size:29
Alignment explanation
Indices: 699815--699912 Score: 99
Period size: 29 Copynumber: 3.2 Consensus size: 29
699805 TCAGGGACTC
*
699815 AGGAACAAAGTA-TATAAGTTGATAGACGA
1 AGGAACAAAGTAGT-CAAGTTGATAGACGA
* *
699844 AGGAACAAAGTAGCTTCTATTCTAAGATAGACGA
1 AGGAACAAAGTAG--TCAAGT-T--GATAGACGA
*
699878 AGGAACAAAGTAGTGAAGTTGATAGACGA
1 AGGAACAAAGTAGTCAAGTTGATAGACGA
699907 AGGAAC
1 AGGAAC
699913 TAAACTAACG
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
29 27 0.47
31 3 0.05
32 5 0.09
34 22 0.39
ACGTcount: A:0.45, C:0.10, G:0.26, T:0.19
Consensus pattern (29 bp):
AGGAACAAAGTAGTCAAGTTGATAGACGA
Left flanking sequence: Indices 699315 -- 699814
TTTTAGAAGCATTTTAGAACCATTATAGACCCTTTTGAGAACCATTTTATAACCATTTCCTATCC
TAAGTATACTTATACTACCTAGTGCAACGAAACAAACTAGCTAGAGAACTCATTTCTCATTTCTC
CTATAATCAGGAACAAAGGAAAGGAAGAAACCTCATATGGACTATACGCCGATATAACAGCTCTT
TCCTCCGTTTATCTGTTTCGTTGCTTATGCAACACTGAGCAACGCTTCGTTGACTATCTATCTGA
TCTATCTACCTAGCTGACAAACAAAAGAACTAGCTCACCGGAAACTACATTCCTAGCTAGCTACC
TATTGGACTATCCGGCACTAGTTGACTTCTAACTACGGACTATGTTCTTACCTATACTAGCTTCT
GAGAAACTAACCATTTCCCATTTCCTAAGGATAGTGATAGTAACCAACTACCGGCAGTATATGAA
CTAGTAGAAACAAGAGAGAGAAATCCCAGATCTAATCAGGGACTC
Right flanking sequence: Indices 699913 -- 700412
TAAACTAACGTATATGGACTACCTATCCGTTATAGTTTACTTCAAACTACTACCTATTTACTATT
TATGGACTATACTAGCTAGAAACGAACCATGGAATGGACTAACCCTTGGAGTTGGATAGTCCGGT
AGCAACACTATTGTAGTTGTATACTAACTAGTGCAACGAAACAAACGACAACGAAACCAACGACA
ACGAAACTAACTACCGCAAGAACTAAACCCGCAAACTCCCAACTACGGAACAATCAGATTACCGT
CAAGAGCTATACCTGATATGGAATACCCGAAACCTTAGAAACTCACTACCTAAGAGAATACGGAT
ATTACCGTTATCATTCTATTAACTCATATTATCTAGATCATTCATTGCTTAGCTATCAAGGTATT
CTTCTCTCTCCTAATAACTCAGTATTACTATTACCTTCGTATATAAATATCGACTACCTTCGGCA
CCAAAAGGAGAAAACTCAACTAGCTGCCATTATCACTCAGTTGAC
Found at i:700096 original size:15 final size:15
Alignment explanation
Indices: 700076--700114 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
700066 CTAACTAGTG
700076 CAACGAAACAAACGA
1 CAACGAAACAAACGA
*
700091 CAACGAAACCAACGA
1 CAACGAAACAAACGA
700106 CAACGAAAC
1 CAACGAAAC
700115 TAACTACCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.31, G:0.13, T:0.00
Consensus pattern (15 bp):
CAACGAAACAAACGA
Left flanking sequence: Indices 699576 -- 700075
CTATCTACCTAGCTGACAAACAAAAGAACTAGCTCACCGGAAACTACATTCCTAGCTAGCTACCT
ATTGGACTATCCGGCACTAGTTGACTTCTAACTACGGACTATGTTCTTACCTATACTAGCTTCTG
AGAAACTAACCATTTCCCATTTCCTAAGGATAGTGATAGTAACCAACTACCGGCAGTATATGAAC
TAGTAGAAACAAGAGAGAGAAATCCCAGATCTAATCAGGGACTCAGGAACAAAGTATATAAGTTG
ATAGACGAAGGAACAAAGTAGCTTCTATTCTAAGATAGACGAAGGAACAAAGTAGTGAAGTTGAT
AGACGAAGGAACTAAACTAACGTATATGGACTACCTATCCGTTATAGTTTACTTCAAACTACTAC
CTATTTACTATTTATGGACTATACTAGCTAGAAACGAACCATGGAATGGACTAACCCTTGGAGTT
GGATAGTCCGGTAGCAACACTATTGTAGTTGTATACTAACTAGTG
Right flanking sequence: Indices 700115 -- 700614
TAACTACCGCAAGAACTAAACCCGCAAACTCCCAACTACGGAACAATCAGATTACCGTCAAGAGC
TATACCTGATATGGAATACCCGAAACCTTAGAAACTCACTACCTAAGAGAATACGGATATTACCG
TTATCATTCTATTAACTCATATTATCTAGATCATTCATTGCTTAGCTATCAAGGTATTCTTCTCT
CTCCTAATAACTCAGTATTACTATTACCTTCGTATATAAATATCGACTACCTTCGGCACCAAAAG
GAGAAAACTCAACTAGCTGCCATTATCACTCAGTTGACTACCTGACAAACAAACGACGTTTATTA
GCTGCTTACCAAGGAAAAGCAAAGTGCCAGAAAAACCTAGTCTGCCGCTTTCGTAACTATCTAGT
AAACTTTCCTACTGAGAAACTTTCCTACTGAGAAACTAACCATGGAATTACTTAACCCTTTCCGT
TGTATAGTAACTAACTGTAGCTTTCCATTCCCTCTTCTTTTCAGT
Found at i:700526 original size:16 final size:16
Alignment explanation
Indices: 700505--700541 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
700495 ACTATCTAGT
700505 AAACTTTCCTACTGAG
1 AAACTTTCCTACTGAG
700521 AAACTTTCCTACTGAG
1 AAACTTTCCTACTGAG
700537 AAACT
1 AAACT
700542 AACCATGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (16 bp):
AAACTTTCCTACTGAG
Left flanking sequence: Indices 700005 -- 700504
CATGGAATGGACTAACCCTTGGAGTTGGATAGTCCGGTAGCAACACTATTGTAGTTGTATACTAA
CTAGTGCAACGAAACAAACGACAACGAAACCAACGACAACGAAACTAACTACCGCAAGAACTAAA
CCCGCAAACTCCCAACTACGGAACAATCAGATTACCGTCAAGAGCTATACCTGATATGGAATACC
CGAAACCTTAGAAACTCACTACCTAAGAGAATACGGATATTACCGTTATCATTCTATTAACTCAT
ATTATCTAGATCATTCATTGCTTAGCTATCAAGGTATTCTTCTCTCTCCTAATAACTCAGTATTA
CTATTACCTTCGTATATAAATATCGACTACCTTCGGCACCAAAAGGAGAAAACTCAACTAGCTGC
CATTATCACTCAGTTGACTACCTGACAAACAAACGACGTTTATTAGCTGCTTACCAAGGAAAAGC
AAAGTGCCAGAAAAACCTAGTCTGCCGCTTTCGTAACTATCTAGT
Right flanking sequence: Indices 700542 -- 701041
AACCATGGAATTACTTAACCCTTTCCGTTGTATAGTAACTAACTGTAGCTTTCCATTCCCTCTTC
TTTTCAGTCGTTCATTCTTCCCTTCTAAGGAGTAATAAAAACCTCTTCTTTCGGTCTCTAGCTTC
GGTCGACTTTGTACCTCTCACAAGCAAGTAGTAAAGTACCTCTCACAAGCAAGTACTAAAGACTA
AAGTACCTCTCTCTTAAATGTCCTATGTAATTTATTAGCTATACCCATAAAAAATTATGGAAAGA
AATGGGATTATCGATAAAAAACTTGCGTTTTACATGGAGCAAAAGTAAGCATTTCCTAAGGAAAA
GCTAGAAATTCTACGACTTGACGAGAGGTTTTATTTATAATATCCTATATTATGTCATTTTGAAA
CCTCTCTAAATTTGTTGCTAAAACAGGGAATTTATCGTTGCAAATGGTACATTTTTAGGAGTAGT
ATACAAAAGGTAACACATTTGTTGGAACATGAAGGAATTATTAAA
Found at i:700710 original size:25 final size:25
Alignment explanation
Indices: 700682--700732 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
700672 GGTCGACTTT
*
700682 GTACCTCTCACAAGCAAGTAGTAAA
1 GTACCTCTCACAAGCAAGTACTAAA
700707 GTACCTCTCACAAGCAAGTACTAAA
1 GTACCTCTCACAAGCAAGTACTAAA
700732 G
1 G
700733 ACTAAAGTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (25 bp):
GTACCTCTCACAAGCAAGTACTAAA
Left flanking sequence: Indices 700182 -- 700681
TACCTGATATGGAATACCCGAAACCTTAGAAACTCACTACCTAAGAGAATACGGATATTACCGTT
ATCATTCTATTAACTCATATTATCTAGATCATTCATTGCTTAGCTATCAAGGTATTCTTCTCTCT
CCTAATAACTCAGTATTACTATTACCTTCGTATATAAATATCGACTACCTTCGGCACCAAAAGGA
GAAAACTCAACTAGCTGCCATTATCACTCAGTTGACTACCTGACAAACAAACGACGTTTATTAGC
TGCTTACCAAGGAAAAGCAAAGTGCCAGAAAAACCTAGTCTGCCGCTTTCGTAACTATCTAGTAA
ACTTTCCTACTGAGAAACTTTCCTACTGAGAAACTAACCATGGAATTACTTAACCCTTTCCGTTG
TATAGTAACTAACTGTAGCTTTCCATTCCCTCTTCTTTTCAGTCGTTCATTCTTCCCTTCTAAGG
AGTAATAAAAACCTCTTCTTTCGGTCTCTAGCTTCGGTCGACTTT
Right flanking sequence: Indices 700733 -- 701232
ACTAAAGTACCTCTCTCTTAAATGTCCTATGTAATTTATTAGCTATACCCATAAAAAATTATGGA
AAGAAATGGGATTATCGATAAAAAACTTGCGTTTTACATGGAGCAAAAGTAAGCATTTCCTAAGG
AAAAGCTAGAAATTCTACGACTTGACGAGAGGTTTTATTTATAATATCCTATATTATGTCATTTT
GAAACCTCTCTAAATTTGTTGCTAAAACAGGGAATTTATCGTTGCAAATGGTACATTTTTAGGAG
TAGTATACAAAAGGTAACACATTTGTTGGAACATGAAGGAATTATTAAACCAGTGGGTTAACAGG
GAAATACTTCTCCTTATCAGTCTTAACCTTTGGGCCTCTACTTGAGCCCTTCGTTCCTCTCCTTT
TCAGTCGAGTAATAAATACCTCTCCTTAACAGTCGAGTCCTTCGTGACAATAGGGTATATAAATA
ACCTCTCCTTTTCAGTCGAGTATATAAATTACCTCTCCTGGAGTA
Found at i:701951 original size:22 final size:22
Alignment explanation
Indices: 701923--701964 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
701913 AAAACGAACC
701923 ATTTCCATAGTATAGTAACTCA
1 ATTTCCATAGTATAGTAACTCA
701945 ATTTCCATAGTATAGTAACT
1 ATTTCCATAGTATAGTAACT
701965 AACAAGTGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (22 bp):
ATTTCCATAGTATAGTAACTCA
Left flanking sequence: Indices 701423 -- 701922
TATTTAGCCTAATTGAATAGTGCCTTAAATCCCACTTATCATGGACAAATACAATCTTCTTGTAG
CTATACCTCAGGACTTCGTACCAGTTGTTGATCTAGGAATCTAACAACCTATAGAAATCGAATGA
AACTTAGCCGCTTTCTTAACTAATAGAAACTAGCTTACCAACGAAAACCCTAGTACTAGCTTTCG
TAACTATCTAGAAAACGAACCTCGGCACTAGCAGTACTACAACAAAACTAACCATTCCCTAACCC
ATAGTATATACACTAACAAATGCTTATGAACTAGTAGAAACTACCGGCAGGAACTAAACCAGCCT
ATTAGCTACGCTATAACCAAAAGGTGCTCACTCATTATCATTAGCTACAGTTATCCTCAATCTGC
CGCTACTTCCTATGGACTTTAACTCACTATCTGAGTGGGATAGTAGATAGTAGCTAGCTGACCTT
ACCAACGCAAAACGAATAGCTTAACTTACTACTGAAAAACGAACC
Right flanking sequence: Indices 701965 -- 702464
AACAAGTGCTTAACCATTTCCGCAGTATATTAACTAACGGCGTACAACGAAACTAACTACCGCAA
GAATAGAGCAACTCATTAAGAATAGAATAGAGAAACTCATTAAGAATAGAGAAAGTCATCCCTCC
TATAATCAGGAACAAAGGATCCAATATGGACCATATCCATTAACTATACAGGTATTCCTATACCC
GAAACTCATTATTACAGAGCTATTTATTATCTATACTCTACTAAACTATTAGAGAGGTATTATAT
ACCCTATACGCCGATATAACCGTACTAAGATAAGATAAGATAAGAGAAACTCACTCTCTAGACTA
TACTATCTATGGACTACCGAAACCTCTTGCCGGGAAACCAACCCTTAGCTAACCCTATGCGCTTT
CTTTCCTTAACAACTACAACTAGCTAACAAACTAAATAAAACCTAGAACTAGCTATCTCAAGAAC
TACCGAACAGAAGAACTACCGAACTCCATAGCATAGAGGAACTCC
Found at i:702056 original size:24 final size:24
Alignment explanation
Indices: 702029--702079 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
702019 AACTACCGCA
*
702029 AGAATAGAGCAACTCATTAAGAAT
1 AGAATAGAGAAACTCATTAAGAAT
702053 AGAATAGAGAAACTCATTAAGAAT
1 AGAATAGAGAAACTCATTAAGAAT
702077 AGA
1 AGA
702080 GAAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.10, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAATAGAGAAACTCATTAAGAAT
Left flanking sequence: Indices 701529 -- 702028
TAACAACCTATAGAAATCGAATGAAACTTAGCCGCTTTCTTAACTAATAGAAACTAGCTTACCAA
CGAAAACCCTAGTACTAGCTTTCGTAACTATCTAGAAAACGAACCTCGGCACTAGCAGTACTACA
ACAAAACTAACCATTCCCTAACCCATAGTATATACACTAACAAATGCTTATGAACTAGTAGAAAC
TACCGGCAGGAACTAAACCAGCCTATTAGCTACGCTATAACCAAAAGGTGCTCACTCATTATCAT
TAGCTACAGTTATCCTCAATCTGCCGCTACTTCCTATGGACTTTAACTCACTATCTGAGTGGGAT
AGTAGATAGTAGCTAGCTGACCTTACCAACGCAAAACGAATAGCTTAACTTACTACTGAAAAACG
AACCATTTCCATAGTATAGTAACTCAATTTCCATAGTATAGTAACTAACAAGTGCTTAACCATTT
CCGCAGTATATTAACTAACGGCGTACAACGAAACTAACTACCGCA
Right flanking sequence: Indices 702080 -- 702579
GAAAGTCATCCCTCCTATAATCAGGAACAAAGGATCCAATATGGACCATATCCATTAACTATACA
GGTATTCCTATACCCGAAACTCATTATTACAGAGCTATTTATTATCTATACTCTACTAAACTATT
AGAGAGGTATTATATACCCTATACGCCGATATAACCGTACTAAGATAAGATAAGATAAGAGAAAC
TCACTCTCTAGACTATACTATCTATGGACTACCGAAACCTCTTGCCGGGAAACCAACCCTTAGCT
AACCCTATGCGCTTTCTTTCCTTAACAACTACAACTAGCTAACAAACTAAATAAAACCTAGAACT
AGCTATCTCAAGAACTACCGAACAGAAGAACTACCGAACTCCATAGCATAGAGGAACTCCCAACT
ACAGAAGAAAGTAGCAAACTTCTAAGATAGACTACAGATAAGATAGACTACAGAACTTTGTAGCT
TCTAAGATATATATATATACTTTGTAACTCCCAACTCGGGAACGT
Found at i:702513 original size:16 final size:16
Alignment explanation
Indices: 702492--702523 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
702482 AGCAAACTTC
702492 TAAGATAGACTACAGA
1 TAAGATAGACTACAGA
702508 TAAGATAGACTACAGA
1 TAAGATAGACTACAGA
702524 ACTTTGTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (16 bp):
TAAGATAGACTACAGA
Left flanking sequence: Indices 701992 -- 702491
TATTAACTAACGGCGTACAACGAAACTAACTACCGCAAGAATAGAGCAACTCATTAAGAATAGAA
TAGAGAAACTCATTAAGAATAGAGAAAGTCATCCCTCCTATAATCAGGAACAAAGGATCCAATAT
GGACCATATCCATTAACTATACAGGTATTCCTATACCCGAAACTCATTATTACAGAGCTATTTAT
TATCTATACTCTACTAAACTATTAGAGAGGTATTATATACCCTATACGCCGATATAACCGTACTA
AGATAAGATAAGATAAGAGAAACTCACTCTCTAGACTATACTATCTATGGACTACCGAAACCTCT
TGCCGGGAAACCAACCCTTAGCTAACCCTATGCGCTTTCTTTCCTTAACAACTACAACTAGCTAA
CAAACTAAATAAAACCTAGAACTAGCTATCTCAAGAACTACCGAACAGAAGAACTACCGAACTCC
ATAGCATAGAGGAACTCCCAACTACAGAAGAAAGTAGCAAACTTC
Right flanking sequence: Indices 702524 -- 703023
ACTTTGTAGCTTCTAAGATATATATATATACTTTGTAACTCCCAACTCGGGAACGTAAAGTAGCT
TTGTTGATATACTTTGTAACTTTGTAGCTTTGTTGATAGACTTTGTAAGTTGAGATATACTTTGT
AGCTTTGTTGATATACTTTGTAACAAGAGAACAGAACTAACCAATATGGATTACCTAAGTCATTC
TATTGAGAAATATATCCTTTAGCCGTTATACCACACAAAAGTGCCAGGAGCTCCCTCCACTACAC
TAGCTGTCCCTACCTAGTATCTTTAGCTCTTTCCCATCTAAAACCATATATCTAGTTACTACCAT
ATATGGAGTGGAGTTAGTACCATATATCTAGTACGTTGCTCTTATCTTACCTTGTGTTTCACAAT
TGGATTGACTTGCTTTCCTTATCCGCTCACTTCGTTCACTACACTTCCTTTCCTTATCCATCCGA
TCACTCGGTAAGCTACACCTTCAGCTATCTATTAGCTAGACTAGT
Found at i:702631 original size:21 final size:21
Alignment explanation
Indices: 702607--702675 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
702597 ATACTTTGTA
*
702607 ACTTTGTAGCTTTGTTGATAG
1 ACTTTGTAGCTTTGTTGATAT
*
702628 ACTTTGTAAG--TTG-AGATAT
1 ACTTTGT-AGCTTTGTTGATAT
702647 ACTTTGTAGCTTTGTTGATAT
1 ACTTTGTAGCTTTGTTGATAT
702668 ACTTTGTA
1 ACTTTGTA
702676 ACAAGAGAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.05
19 11 0.27
20 6 0.15
21 20 0.49
22 2 0.05
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (21 bp):
ACTTTGTAGCTTTGTTGATAT
Left flanking sequence: Indices 702107 -- 702606
CAAAGGATCCAATATGGACCATATCCATTAACTATACAGGTATTCCTATACCCGAAACTCATTAT
TACAGAGCTATTTATTATCTATACTCTACTAAACTATTAGAGAGGTATTATATACCCTATACGCC
GATATAACCGTACTAAGATAAGATAAGATAAGAGAAACTCACTCTCTAGACTATACTATCTATGG
ACTACCGAAACCTCTTGCCGGGAAACCAACCCTTAGCTAACCCTATGCGCTTTCTTTCCTTAACA
ACTACAACTAGCTAACAAACTAAATAAAACCTAGAACTAGCTATCTCAAGAACTACCGAACAGAA
GAACTACCGAACTCCATAGCATAGAGGAACTCCCAACTACAGAAGAAAGTAGCAAACTTCTAAGA
TAGACTACAGATAAGATAGACTACAGAACTTTGTAGCTTCTAAGATATATATATATACTTTGTAA
CTCCCAACTCGGGAACGTAAAGTAGCTTTGTTGATATACTTTGTA
Right flanking sequence: Indices 702676 -- 703175
ACAAGAGAACAGAACTAACCAATATGGATTACCTAAGTCATTCTATTGAGAAATATATCCTTTAG
CCGTTATACCACACAAAAGTGCCAGGAGCTCCCTCCACTACACTAGCTGTCCCTACCTAGTATCT
TTAGCTCTTTCCCATCTAAAACCATATATCTAGTTACTACCATATATGGAGTGGAGTTAGTACCA
TATATCTAGTACGTTGCTCTTATCTTACCTTGTGTTTCACAATTGGATTGACTTGCTTTCCTTAT
CCGCTCACTTCGTTCACTACACTTCCTTTCCTTATCCATCCGATCACTCGGTAAGCTACACCTTC
AGCTATCTATTAGCTAGACTAGTAGCCTAATGCAAAGAGCAACTACCGGCGTACCTACCGTACTA
TCCATCGTGTTACCTATCCTATAGAAATCTCATTCAACAACTTAGCTTTCTTAACTACTAGCTAT
GCGCTTCCCTAAGAGAAAGTGCCAGAGCAACCAACGCAAAACTAA
Found at i:703266 original size:15 final size:15
Alignment explanation
Indices: 703246--703274 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
703236 AGGAACAAAC
703246 GAATATGGACTATGG
1 GAATATGGACTATGG
703261 GAATATGGACTATG
1 GAATATGGACTATG
703275 TAATTCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (15 bp):
GAATATGGACTATGG
Left flanking sequence: Indices 702746 -- 703245
ATACCACACAAAAGTGCCAGGAGCTCCCTCCACTACACTAGCTGTCCCTACCTAGTATCTTTAGC
TCTTTCCCATCTAAAACCATATATCTAGTTACTACCATATATGGAGTGGAGTTAGTACCATATAT
CTAGTACGTTGCTCTTATCTTACCTTGTGTTTCACAATTGGATTGACTTGCTTTCCTTATCCGCT
CACTTCGTTCACTACACTTCCTTTCCTTATCCATCCGATCACTCGGTAAGCTACACCTTCAGCTA
TCTATTAGCTAGACTAGTAGCCTAATGCAAAGAGCAACTACCGGCGTACCTACCGTACTATCCAT
CGTGTTACCTATCCTATAGAAATCTCATTCAACAACTTAGCTTTCTTAACTACTAGCTATGCGCT
TCCCTAAGAGAAAGTGCCAGAGCAACCAACGCAAAACTAATAGCTTACCTTACTAATTCCGAACT
CGGGAAGGGAACAAAGTAGCTTCGTTGATAGACTCAGGAACAAAC
Right flanking sequence: Indices 703275 -- 703774
TAATTCTATTCTATTAACGCTTTTCTGGAAAAGGAAAAGTCTGCCCTCTCCGGCACTCAGTATTA
CAAAAGTATATAGCGATTACCTTCGGCACCAAAGAAAAGTAGCTCACTCACGTAGGTAGCTACAA
CTGACTTTGTTGAACAACATTACTAGATTGACTTGCTTTCCGACGTTGAACAACATTACTGGAAT
TCTAGCTACCAAACTATGGTAACTAGTTTACTACTTCAAAGATTAAGGAATCAAGAAACCACGAA
TCTATACAAGAAATTACCTCAGACGTACTTTACTATACCAAGGTAACTAGTACCTTACCAAGGAA
AGGGAACTCACTAACTAGTACCGGAACTTTATTAGCAGCAGTCCCCTCTTAGCCGGGGGATTAGC
TACTACATGGAATCCCCCTTACCTGACCGAGAATGTAATTCATTAACCATCTATCGGACGTACTA
TACTAGTTGACTTCCTATTACCTATACGCCGATATCACCGTACTA
Found at i:704100 original size:19 final size:19
Alignment explanation
Indices: 704072--704108 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
704062 TGGAGTAAAG
704072 TACTTGAGTTTCATACCTA
1 TACTTGAGTTTCATACCTA
* *
704091 TACTTTAGTTTCCTACCT
1 TACTTGAGTTTCATACCT
704109 CTTACCTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.46
Consensus pattern (19 bp):
TACTTGAGTTTCATACCTA
Left flanking sequence: Indices 703572 -- 704071
CCAAGGTAACTAGTACCTTACCAAGGAAAGGGAACTCACTAACTAGTACCGGAACTTTATTAGCA
GCAGTCCCCTCTTAGCCGGGGGATTAGCTACTACATGGAATCCCCCTTACCTGACCGAGAATGTA
ATTCATTAACCATCTATCGGACGTACTATACTAGTTGACTTCCTATTACCTATACGCCGATATCA
CCGTACTAAGATAAGAGAAACATTTGCCGGTAAAGGAAATAAGACTCTACCTCTTGGTATTTTCA
AATACTAACTATTTGGGTATGCAATCTTATACCTAGGAAAACCGGCAGGAAACAAACTTCTCCTC
TGCAGGTCAACACTTGAGAACTCTTGATTCCCTATATTCTATTGAACAATTACGTCTTCCCTTCC
CTAGATTCTATTGATTGAATAATCCATTACCTGAAAAGTATACCTGTAAAGTCGGACTAATCCTA
ATGGTCTTAGTCAACACTGTAGACCTCTACTGGAGTGGAGTAAAG
Right flanking sequence: Indices 704109 -- 704608
CTTACCTCTACTTGATGAGTAAGGAAAGGAAATAGCTGCTAAAACCTAAAGGAAAGAAACAGCTC
TTCTTATGGTTTTAACTTGGTACCTCTGGACTACGGTCGAACAATTAATATTAATAACGTCTTCC
CTTCCTCAAAAGAGCTATAACAAACCTTAGGAAAGCAAAGAAATAGCTTTTCTCTTCCCTAGATT
CTAGAAAGTAGAGCAATAAATAGATAAATTATCTCTCCCGAGCGCGCTTCTATACAACTTTTATA
TAAATAACCTTGGACTTCTAAGAGCACTTTCGACCTCTCCCTTCTAAGAGTCCTTCGGACCTTTA
CCAAATGTTTGTCCTATTTCATTTCTTAGCTATCCGCTCCTTCAATTATCAAGAAAAACTGGCAT
CTAGCATGGGACAAAAGTAAGCGTTTCCTTCTACAAAGTGATAAATTCTCCAACTTTACGAGAAG
TTTTATTTGAAATATCGTATATTATGTGATTATTCAAACTATATC
Found at i:706382 original size:27 final size:27
Alignment explanation
Indices: 706344--706416 Score: 146
Period size: 27 Copynumber: 2.7 Consensus size: 27
706334 AGCACCTTCT
706344 TACCTCTTCTGGGAAGTCTTAACTTGG
1 TACCTCTTCTGGGAAGTCTTAACTTGG
706371 TACCTCTTCTGGGAAGTCTTAACTTGG
1 TACCTCTTCTGGGAAGTCTTAACTTGG
706398 TACCTCTTCTGGGAAGTCT
1 TACCTCTTCTGGGAAGTCT
706417 CGCATATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
TACCTCTTCTGGGAAGTCTTAACTTGG
Left flanking sequence: Indices 705844 -- 706343
TCTCCTGGCACAGTCGAGTCCCTCTTTCCTCTTCTCGTACCTCTCTCTTCGGTCTTTTCTTTCGA
CCTCTCACAAAGGTCGAGTCAAAAATACCTCTCACAAGTACTTTGGTACCTCTCACAAGTACTAA
ATACCTCCCCCAAATGTTTGTCCTATTTCATTTTGACGCTATACGCTCCTAAATTTCCGACAAAA
ACTTGCATCTAGCATAGGGCAAAAGTAAGCGTTTCCTTAGTAAAAGTCTGTAATAACCCGACAAA
ATAGAGGGTTTTATTCTTATTATCGTATATTATGTCAAAAAGACTTCTATAGAAATAAGTTGCTA
AAACCCGTTCTTTTGCGTTACTTTTTAGCCATTTCTTGGAGCTTCCTAAAAAAGGTAACACATTT
CTTTTAAGATACTAGAAAATGGAAAGCTTTGGGTTCACTAGGCACCTTCTTACCTCTCTACATTC
CATTCACTCTAGCTCATAGGTGGAGGTTTCACTCGAGCACCTTCT
Right flanking sequence: Indices 706417 -- 706916
CGCATATAAAAACCTCTCCTTTCTAAGAGCCCTTCGGATCTCTCCCGCGGGTCGAGGACTTCTTA
CCTCTCGCTTCGCTCCTCTCCCTATGGTCTTTCGACCTCTCACAAGAAACGAGCACCGAATATCA
GATTCGTTTCAAAGAAAAACCAAAATTGCGTTTTCATTATGGTCTTACAGAACGCCAATTACTTA
AATACGTTCGTATCGCCGGAAAAGCCAAGGTACGGAGTCCTGTTTTACTACAATTACTTGAAATG
CGTTTGGATAATACCCTTTTTCGATTGGGTATGGCTTCTACTATTCCTCAAGCCCGCCAATTAGT
TAATCATAGACATATCTTAGTAAACGGCCGCATGGTTGATATACCAAGTTATCGCTGCAAACCCC
GAGATATCATTACAGCAAGGGAGAAAGAAAAATCAAGAACTCTGATTCCAAATTATCTTGATTCA
CCCCCCCATAAAAAATGACCATATCATTTGACCATTCACCCACTC
Found at i:719787 original size:12 final size:12
Alignment explanation
Indices: 719770--719795 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
719760 TTACACTATA
719770 TTACCAAAAAAG
1 TTACCAAAAAAG
719782 TTACCAAAAAAG
1 TTACCAAAAAAG
719794 TT
1 TT
719796 TGACTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
TTACCAAAAAAG
Left flanking sequence: Indices 719270 -- 719769
TAGTTATCTTCTATTTAGTGTTTAGTATTGAGTCCCATTTGGTTCTATATCTATTATTAGATAGA
ATAGAAAACTCACTTTTGCCACACTCTATCACATTGAAATCTGACAATACCGATATAGCCTCAAT
GCTCGAATTTTGTGGTCTAATTGGGTGGATTGAAAAAGAAATTGGAGGGGTAAAGTCAAAAGGCC
TTCTGAACAATATATAGACTATGGCTGGGAATGTAGTACAAGTAATCCACGACATCTGGTAGAAA
AAGAATAGAGAGAAGCAAAAGACTTTTCATCTCATAATTCAACATTTTTGGAATCAAATAAGACG
AGAATTGCTAATAAGAATTGGATTCTTTTTAGAAACAACATTGAATGTTCACAGCTCCGCGTGCA
GATCTCAAAATGCATTTCGGACAATTGAACTTTCTAAAACTGCTTCTTTTTAAGAACCAAAAAAA
TGAGGTGGGTTACTAGTATAGTTCCCGACCCCCCATTACACTATA
Right flanking sequence: Indices 719796 -- 720295
TGACTGGAATAGAGTATAGAACCACCGGAAGGGTAGTAAGGGGTAAGTAACGCTTGGCTTTGTGT
AGTGTATAAAGCAATAAAGATGATAATTGTATCGTTGGATCCGGTCTTTTTTCATTCCTTCGTTT
CCTTCATTGCAGTATACATCACATCAAGTGACGGGCATAGTCCGTTGAAATAACGGAAGGACATA
TATTTAAAGGCTATATGTAAAAGGGATGGCAAAATCCAACCCAAAATAGATACGATTCTATCATT
ATAATCATATCCAAAACTTTTGACGACATAGACAGTTATGAATTCCCAAATGGCTTTCGAATGAT
ATCCTAAATAAATATCACTTAAAAAAACAAAACAAAGGGCCTTTTCTTGGTAAGTGTAATTCGTT
GGACATAGATCCAATTTTGCCATTTTTTCGCTATACGCGTAAGAAATTGGAGACAAAAACTCGCA
TCTAGCATAGGGCGAAAGTTACCCTTTCCTTAGTAAAAGTCATCC
Found at i:720697 original size:16 final size:16
Alignment explanation
Indices: 720676--720708 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
720666 CTGCAGCTAG
*
720676 TAACTCGGTAGGTAAC
1 TAACTCGATAGGTAAC
720692 TAACTCGATAGGTAAC
1 TAACTCGATAGGTAAC
720708 T
1 T
720709 CGATAGATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (16 bp):
TAACTCGATAGGTAAC
Left flanking sequence: Indices 720176 -- 720675
GTAATTCGTTGGACATAGATCCAATTTTGCCATTTTTTCGCTATACGCGTAAGAAATTGGAGACA
AAAACTCGCATCTAGCATAGGGCGAAAGTTACCCTTTCCTTAGTAAAAGTCATCCATAACCCGAC
TTGACTCTCTCTTTTTCTATTATTATCTTATATTATGTTATTTTTTACACTATAGAAATAAGTTG
CTAAAACACGTGATTTTTCGTTACTTTTTAGCCATTTTTCTACGCTTACCAAGACCTTGCTGTTT
TTGTACAATAAAGCAAACAATGGATTGTATGGATGCCCGGGCACCTCCTGACCGGAGGGAACGAA
GTAAAGCGGCTACACCAAAGAAAGAAACAAGTAAAGAAAGAAAGGGAAACTAGTTCCTTTGTTAG
CTACTAGGTATGTCAGCTACTAGATAGGTAACTCGTCCGGTAACTCAACTAGGTATGTCAGCTAG
GTGTATGTCAGCTAAGCCCCCGGCGTATGAGGGGACTGCAGCTAG
Right flanking sequence: Indices 720709 -- 721208
CGATAGATAGGTAACTCGGTATGTCAGCTAGGTGTATGTCATCTAACTCGGTATGTCATCTAACT
CGGTATGTCAACTAGTCAATCAATATCCTGTTGTTCCGATCAGCTAGTTAATCAACGCCAGCGTT
GCTCAGTGTTGCAAGGAAACAGAGAAACGGAGCAAAGAGCAGTTGTGAGAGTGAGAGTCCAAAGC
AAGTAGCTAATAGGCTAGTTATGAGGTTTGTCAAGTCCGGTCACTCAACTAGGTAGATAGATGGG
TAATTGTAGATAGATGCTAATTCATGATAGTAGTTATAGGTTCACGCTAATTGAGTGAGCTCCTT
TTGGTTAGAGCTCCGTGGCTAGTTCCTTAGGTTAGTCCGTAGTTAGAAGTCAACTAGTTAGGATA
GATAGGTAGTACGTCCGCTAGCTAGTATTCCTTATTCCTTACATGTAGTTTCCGGTCAATACAGT
TGTTGTTGTTTCCGGTGAGCTAGTCAACCAAGGTTTGAGAAGGAA
Found at i:720764 original size:17 final size:17
Alignment explanation
Indices: 720720--720783 Score: 87
Period size: 17 Copynumber: 3.9 Consensus size: 17
720710 GATAGATAGG
*
720720 TAACTCGGTATGTCAGC
1 TAACTCGGTATGTCATC
**
720737 TAGGT--GTATGTCATC
1 TAACTCGGTATGTCATC
720752 TAACTCGGTATGTCATC
1 TAACTCGGTATGTCATC
720769 TAACTCGGTATGTCA
1 TAACTCGGTATGTCA
720784 ACTAGTCAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
15 12 0.30
17 28 0.70
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.34
Consensus pattern (17 bp):
TAACTCGGTATGTCATC
Left flanking sequence: Indices 720220 -- 720719
ACGCGTAAGAAATTGGAGACAAAAACTCGCATCTAGCATAGGGCGAAAGTTACCCTTTCCTTAGT
AAAAGTCATCCATAACCCGACTTGACTCTCTCTTTTTCTATTATTATCTTATATTATGTTATTTT
TTACACTATAGAAATAAGTTGCTAAAACACGTGATTTTTCGTTACTTTTTAGCCATTTTTCTACG
CTTACCAAGACCTTGCTGTTTTTGTACAATAAAGCAAACAATGGATTGTATGGATGCCCGGGCAC
CTCCTGACCGGAGGGAACGAAGTAAAGCGGCTACACCAAAGAAAGAAACAAGTAAAGAAAGAAAG
GGAAACTAGTTCCTTTGTTAGCTACTAGGTATGTCAGCTACTAGATAGGTAACTCGTCCGGTAAC
TCAACTAGGTATGTCAGCTAGGTGTATGTCAGCTAAGCCCCCGGCGTATGAGGGGACTGCAGCTA
GTAACTCGGTAGGTAACTAACTCGATAGGTAACTCGATAGATAGG
Right flanking sequence: Indices 720784 -- 721283
ACTAGTCAATCAATATCCTGTTGTTCCGATCAGCTAGTTAATCAACGCCAGCGTTGCTCAGTGTT
GCAAGGAAACAGAGAAACGGAGCAAAGAGCAGTTGTGAGAGTGAGAGTCCAAAGCAAGTAGCTAA
TAGGCTAGTTATGAGGTTTGTCAAGTCCGGTCACTCAACTAGGTAGATAGATGGGTAATTGTAGA
TAGATGCTAATTCATGATAGTAGTTATAGGTTCACGCTAATTGAGTGAGCTCCTTTTGGTTAGAG
CTCCGTGGCTAGTTCCTTAGGTTAGTCCGTAGTTAGAAGTCAACTAGTTAGGATAGATAGGTAGT
ACGTCCGCTAGCTAGTATTCCTTATTCCTTACATGTAGTTTCCGGTCAATACAGTTGTTGTTGTT
TCCGGTGAGCTAGTCAACCAAGGTTTGAGAAGGAAGTGGGTTGCCAGTTAGTCAAGAAAGGAAGT
TGTAGCTAATACAACAGTATGGGTTAATATAATTAATATTGGTTA
Found at i:721344 original size:15 final size:15
Alignment explanation
Indices: 721326--721366 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
721316 AGTTCTATAG
721326 GTAGTTTGTTTCGTT
1 GTAGTTTGTTTCGTT
*
721341 GTAGTTGGTTTCGTT
1 GTAGTTTGTTTCGTT
*
721356 GTCGTTTGTTT
1 GTAGTTTGTTT
721367 GTCAGGTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.07, G:0.29, T:0.59
Consensus pattern (15 bp):
GTAGTTTGTTTCGTT
Left flanking sequence: Indices 720826 -- 721325
CAACGCCAGCGTTGCTCAGTGTTGCAAGGAAACAGAGAAACGGAGCAAAGAGCAGTTGTGAGAGT
GAGAGTCCAAAGCAAGTAGCTAATAGGCTAGTTATGAGGTTTGTCAAGTCCGGTCACTCAACTAG
GTAGATAGATGGGTAATTGTAGATAGATGCTAATTCATGATAGTAGTTATAGGTTCACGCTAATT
GAGTGAGCTCCTTTTGGTTAGAGCTCCGTGGCTAGTTCCTTAGGTTAGTCCGTAGTTAGAAGTCA
ACTAGTTAGGATAGATAGGTAGTACGTCCGCTAGCTAGTATTCCTTATTCCTTACATGTAGTTTC
CGGTCAATACAGTTGTTGTTGTTTCCGGTGAGCTAGTCAACCAAGGTTTGAGAAGGAAGTGGGTT
GCCAGTTAGTCAAGAAAGGAAGTTGTAGCTAATACAACAGTATGGGTTAATATAATTAATATTGG
TTAGTTCCTTTGTTCATCCTAAGATAAGAGGTCCTAGTTCTATAG
Right flanking sequence: Indices 721367 -- 721866
GTCAGGTAGTATAGTCCGTTCCTTTGTTTGTCAGCTAGTTATGAGGTTTGTAGCTAATTGAGTTT
TCTCCTTTAGTCGCTATCTATATACAGAGAATCAGACTTTTCTAGCTAGGCAATAATGATCTAGT
CCATATGAGTTAATAGAATGAGATAGGTAAGATGAGGTATAGCTCTTTGTTCCTTTGTTGTTAGT
TAGAGGGTTTAGTTCTCGTTGTAGTTTGTTTCGTTGCTTAAGATACTTAGGTAGTGGTGCCGGAA
ATGCTTCTAAAATGGTTAGTAAGGTTTGGCAATGTATTGCGCGGCGTATTACAGGTGGTAAGGTA
ACTTCAGCTAATCAGCTAGGTAGTGACTTTGTCAGCTAGTTCTAATGGCAGCTAGTTCCTGCCGT
TTCTCAGCTAGTAAACGAAGCGTTGCTCAGTTAAGAAAGGAAACAGATAAACATAAGAAAGAGGG
TTAACAGTGAGTGTCTCGTGGGAAGCAAAGCATTTGGATAGCCCA
Found at i:722058 original size:25 final size:25
Alignment explanation
Indices: 722029--722084 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
722019 GGGAACTTAG
*
722029 GCTAGTCAACTGAGTAATAATGGCA
1 GCTAGTAAACTGAGTAATAATGGCA
**
722054 GCTAGTAAACTGAGTTGTAATGGCA
1 GCTAGTAAACTGAGTAATAATGGCA
722079 GCTAGT
1 GCTAGT
722085 TCCTTTGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (25 bp):
GCTAGTAAACTGAGTAATAATGGCA
Left flanking sequence: Indices 721529 -- 722028
TGAGGTATAGCTCTTTGTTCCTTTGTTGTTAGTTAGAGGGTTTAGTTCTCGTTGTAGTTTGTTTC
GTTGCTTAAGATACTTAGGTAGTGGTGCCGGAAATGCTTCTAAAATGGTTAGTAAGGTTTGGCAA
TGTATTGCGCGGCGTATTACAGGTGGTAAGGTAACTTCAGCTAATCAGCTAGGTAGTGACTTTGT
CAGCTAGTTCTAATGGCAGCTAGTTCCTGCCGTTTCTCAGCTAGTAAACGAAGCGTTGCTCAGTT
AAGAAAGGAAACAGATAAACATAAGAAAGAGGGTTAACAGTGAGTGTCTCGTGGGAAGCAAAGCA
TTTGGATAGCCCACTATTCTGATAGCTGCTAGTTAGAAGCTAATAGGCTAGTTTGTCAAGATAGG
TAACTCAACTAGTCCAATAGATGGGTAATGAATGTAGTTATCGGTCGGGTAAGGGAGGGATCTTG
GATGAAACCTGTAGCGGCAAGCCCCCGGCGTCTGAGGGAACTTAG
Right flanking sequence: Indices 722085 -- 722584
TCCTTTGTTCCTGAGTACTTTTCGAAGAGGGATTTCTCTCTTGCCGGTAGTTTCTTTCTACTAGT
TCATATACTGCCGGTAGTTGGTGTATATCCAACGGTAATTCCATGGTTAGTTTCTCATAAGCTAG
TATAGTCCGTAGAGAGTAGTCAACTAGTTAGGATAGATAGTACGTACGTCCGGTAGCTAGTATTC
CTGGTAAGCTAACTTCAGCTAGCCTTAGGCGATTTATCATTTCTGGAGATAACAGGAAGCTAAGC
GTATGATAATATAAGGAAAGAAGGTTTGAGAGTCAAGATAACTCTTGTGAATAGTAGTTCTAGAA
AAGAGTAAGTAGTTCTACAAAAGTCGGTAGTTGTAGCTAAGTGAGTAGTTGTAGCTAAGTCAGGA
AGTCAGTAGAGTAGCGGAGCGGAGAAATAAATCACTGAAACAGTATTCGCACCTTACTTGATTCA
TTCCTTCCACCCGAAGCCCCTGCTGCCTGCCTGGGATGAGCGTCC
Found at i:722451 original size:18 final size:19
Alignment explanation
Indices: 722430--722470 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
722420 AGTTCTACAA
722430 AAGTCG-GTAGTTGTAGCT
1 AAGTCGAGTAGTTGTAGCT
722448 AAGT-GAGTAGTTGTAGCT
1 AAGTCGAGTAGTTGTAGCT
722466 AAGTC
1 AAGTC
722471 AGGAAGTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.27, C:0.10, G:0.32, T:0.32
Consensus pattern (19 bp):
AAGTCGAGTAGTTGTAGCT
Left flanking sequence: Indices 721930 -- 722429
GTCCAATAGATGGGTAATGAATGTAGTTATCGGTCGGGTAAGGGAGGGATCTTGGATGAAACCTG
TAGCGGCAAGCCCCCGGCGTCTGAGGGAACTTAGGCTAGTCAACTGAGTAATAATGGCAGCTAGT
AAACTGAGTTGTAATGGCAGCTAGTTCCTTTGTTCCTGAGTACTTTTCGAAGAGGGATTTCTCTC
TTGCCGGTAGTTTCTTTCTACTAGTTCATATACTGCCGGTAGTTGGTGTATATCCAACGGTAATT
CCATGGTTAGTTTCTCATAAGCTAGTATAGTCCGTAGAGAGTAGTCAACTAGTTAGGATAGATAG
TACGTACGTCCGGTAGCTAGTATTCCTGGTAAGCTAACTTCAGCTAGCCTTAGGCGATTTATCAT
TTCTGGAGATAACAGGAAGCTAAGCGTATGATAATATAAGGAAAGAAGGTTTGAGAGTCAAGATA
ACTCTTGTGAATAGTAGTTCTAGAAAAGAGTAAGTAGTTCTACAA
Right flanking sequence: Indices 722471 -- 722970
AGGAAGTCAGTAGAGTAGCGGAGCGGAGAAATAAATCACTGAAACAGTATTCGCACCTTACTTGA
TTCATTCCTTCCACCCGAAGCCCCTGCTGCCTGCCTGGGATGAGCGTCCTCTGATCTAAATACGA
GCTCCTGTTTTCTTTCTGGCAATGAGCTAGCTTAACAACCCTGATTGGATTGCTTAAGGCAACAT
ACAGTCATGTTGGATCTCCTATTCGTACTGCTACCAGGAAGAGAAAGACTGATTGCGACAGCTCA
ACCGGATGAGACATCTCTTATTTACAGAACTGTGCCAACGTGTGCCTACATTGTTAGTATATATT
TTGGACAAGTTCCGGTAAGAGAAATTTATTGAATAGAAAGAATGAAACCAGTACCAGCTTATCGC
CAACCGTGCTTCCTACCAACTCCGCCAACCCCAGACGGATATATTGATTTAGCCGCACCTGAACC
CGAAACTCCTGCCTATACTCCGCCTACTTCTTGTGCCTACTTCTA
Found at i:724210 original size:21 final size:21
Alignment explanation
Indices: 724186--724225 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
724176 AGAGCTGCTG
724186 AGGGACCTCAACCTCAGGCTC
1 AGGGACCTCAACCTCAGGCTC
*
724207 AGGGGCCTCAACCTCAGGC
1 AGGGACCTCAACCTCAGGC
724226 CCCACCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.28, T:0.12
Consensus pattern (21 bp):
AGGGACCTCAACCTCAGGCTC
Left flanking sequence: Indices 723686 -- 724185
AATAGTCTTCTTTTTCGAAGACTTTAGATTAGAGAATTTTAACAACAACATAGAATTCAATAGAA
AATGAAATATTGGAAAGGGAACAAAACAAAACACGAAAGGTAAAAAAGAATCAACATTTTAAGCG
CATATGGCACGCAAAGGAAATCCTATTTCGACAAGACTTAATCTTAATCGTAGTTCCGATTCCGC
TTGGTTCACTGATAAAGAAAAGATCGCTTTTTTTATGAGAAATTTGCTCGTGGGTTATCTGATAG
CGGTTGTAACACTCATCGGTTCTAGTCTTTTTATTTTATATATCCTTTTGTCATCGATTGAACAA
TCCCTCTTCATTGAAGTCTTTATAAAGAATATTCAAGCTGTTTTTTTCAGGAGAATTCTGCATTT
GGTTTTTCCTAGTTTTTCTTTTCCTTTTTTTTTTATGATTCTATTTTTTATCTATTGTCCGGCGG
GGAATGCTATGATGCCCGAGGAGGAATTCCCACCAAGAGCTGCTG
Right flanking sequence: Indices 724226 -- 724725
CCCACCTATTGTGGAGGGGGTCCCGATTCCCCGGGTTCTGGAGGGGGTCCCGATTCCCCGGGAAG
ACGAGTGGGCAGTTGTCAACTCGCCTTTTTATTATAGCAAAGTTGTCCATATTGATGGGGAAATA
ACAGATCCCCAAACTTTATACAACTTGAGTAAATTGAATGGACTGCTGCTTTTTGTGCAAACAAA
TTGTATGCAACCGGAATATGTCCGCTTACTTCAAGCAGAATTGAACAGCACGCCCCCTGAGGAGC
TGGCAGATAAACTTTTCAGTATTCGGAGGCGTGAAGCATCTTTTTTCGGATGCCGCCCCGATTAG
GTGCCGGAGCGGCCACTATTGCTTTAGCGGGAGCAGCTATCGGTATTGGAAACGTTTTTAGTTCA
TTAATTATATAGGGGAAAAAAGAGTGAGATAGGAGCGGAGCGACAAGAACAATCATTTTCCAAGC
TAAAGTCTTTTACCCATGAGGGGTCCGAAACGACGCATTCGTAGA
Found at i:733658 original size:15 final size:15
Alignment explanation
Indices: 733634--733663 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
733624 TCACTCTGAC
*
733634 AGTGACTTAACTCAA
1 AGTGAATTAACTCAA
733649 AGTGAATTAACTCAA
1 AGTGAATTAACTCAA
733664 GAAAGGGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (15 bp):
AGTGAATTAACTCAA
Left flanking sequence: Indices 733134 -- 733633
TGGGTTCGAACCCTAATAGTAGGGGAAGAAGTTGAGCTGTGTTTCTATGGGTATTCAATATATTA
GTCGAGAAACGAATGATGTATTATCTTAAATAGTAATATTGGTTTGAGTGATATTGTAATGGATC
ACACTCAAGATCGCTGGCGATTCGATTCCATTCTGTCAACTCTTCGATGCCAACAAATTACGTAA
ATGAAATGACTAGGAGAGTTTCGATTCTTCGATCCTTTTTTTATGTGAATGAAATCACAACGTGC
GAAGTCAAATGCTCTTTCATCCCATGTCTTTCTATGTTGTTGACCAACCAACCCACATCTTTCGT
TCTTCAAATGTGCCAGTCTTTCTCCATGATTTTTGGGGGGAGCAGTCAAAGAATCAACAAAAGCC
AGCCCATGAAAAAGTGTTGTGATGGATTTTCCGGTTTTTTCAAAAAATGGCTATGTTGTGGTGGT
ACAGGTAAAAAGCCAGGCGTCACGGAAATTTCTTGTCACTCTGAC
Right flanking sequence: Indices 733664 -- 734163
GAAAGGGTTACAACAAATTCTATTGAAACGGTAAATAATGCACCTTCGCCGATCCAAAGCCCCCT
TGAGCAATTTGAAATAACCCCATTGATTCCTATTCATATAGGAGACTTTTATTTCTCATTCACCA
ATTCATCTTTGTTTATGCTGCTAACTCTGGGTTTGTTCCTACTTCTGGTTTATTTTGTTACTAAA
AAGGGGGGAGGCAACTTAGTGCCAAATGCGTGGCAATCGTTGGTCGAGCTTCTTTATGATTTCGT
ACTTAACCTGGTAAACGAACAAATAGGCGGTCTTTCCGGAAAAGTCAAACAAACGTTTTTCCCTT
GCATTTTTGTAACTTTTACTTTTTTGTTATTTTGTAATCTTCAGGGTATGATACCTTATAGCTTC
ACAGTTACAAGTCATTTTCTCATTACTTTAGGTCTCTCATTTTCCATTTTTATTGGCATTACTAT
AGTGGGATTTCAAAGAAATGGTCTTCATTTTTTAAGCTTCTTATT
Found at i:736698 original size:15 final size:15
Alignment explanation
Indices: 736678--736709 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
736668 ATTGGAAGGG
736678 TACCTATCTTATCAC
1 TACCTATCTTATCAC
736693 TACCTATCTTATCAC
1 TACCTATCTTATCAC
736708 TA
1 TA
736710 AAATAAAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (15 bp):
TACCTATCTTATCAC
Left flanking sequence: Indices 736178 -- 736677
CAGAGCAGGTTGCCTTTATTCCCTTTATTCCTTTATTCTAAGAGTGGGGGAGTGGGTAAGCTTGC
CTATTCATAAGTTTTCACTTCTTTTAATTGATATTCACATTCAGACTGAGAAACTATATCCTGTA
TATACAATACATTTGCTTTCTCTTTCTATACAGCAATCAATGGGCAATGAGAAAATAGTTACTTT
ACTGGTAAGCAGAACTGCCGGGGGAAGAATATTTTCCAATCGTCTAAATATCGAGCTACTCGAAA
GATCAGATGGTGCAACTAGCCGCCTTATGAAGAAGGATTGACCTAGCTCAGGAAAATGAAGAGGA
CAATTCCAACTAGGCCAGCAGTTACTAGTCCGGTTGATGGCGTAGGAAAACAAGAAACAAGAGCT
ACCTAGAAAAAGCGGATGCTGACTTTAGCTCAGCTTCGTTTAGGCCCAACCCAAACATAATAATG
GGAATGGGGAAGAGAATTGTCATATCTAATGATCGATTGGAAGGG
Right flanking sequence: Indices 736710 -- 737091
AAATAAAAGCATTCTTTCTCTTGCGCCGGTAGATTGACTGAAAATACGGAATACTCCTTACCTTA
GCTTAGATGGGAGATATATTATATACTATATAGGAAGAACATCTCTGACTAGATTGATTTTGCTA
ATGGAACAGGAACAAAAGAAAAGCGAGGAAGTGAGAACGGAAAAGGCTATTTAGCGTTTAGATGC
TTTTTTTCAACATAGGAAAGGAGTAGGAGTGAAAGCAGCGAGACTTCTGAAACGAGTATTTCATT
CTTTATTGTTTACTTTACCAGCGTAGAAGTGAAGTTTCCATGTTCTCGGAAAGTTCCGGAATGAC
TTTTAGGAGAAGTATGGAAGATCGATCAAACCCGCGACTAAGTATTCAGTATTCCAT
Done.