Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_016125
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 219747
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Found at i:4190 original size:3 final size:3
Alignment explanation
Indices: 4182--4206 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4172 CGTGCGCCCG
4182 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
4207 AAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Left flanking sequence: Indices 3682 -- 4181
CTAACCTTGAACTGACCCTTCAACTGACTAGGCGCTTGGGAATTCTGAAACCTCCCCCTTTTTCT
TTTGAGACCTACTTCCTCCTTGCTTGAACCTTTGCGACGACTATGGCACCTTTTGGCTTGTACTC
CTCGAGGAACGCCTTATGCCTTAGGAAAGAGAGATGCTAGCTCTTCCTGTCTTCCAGTGGGGTAA
GCAGAAGTGATCAACGAAGACCAAAAAGCTATTATGTTATATAAAGCACAGCTGCCATTTCATTT
CCTTTGCTACCGGCTTCTTTCTTTCTTTTTGTTCAAATCAATCAAGGATCGAAGAGATCTATCTT
TCCGGCTTAGCCGAACTTCTCACCTGGTATGTCCTAGTTCTTTGTTCATGCTGCTAACTCTGAGT
TTTGTCCTACTTCTGATTTTGGTTTTCGTATCATGGATCTTGGTTCGCGCTTTATGGAATTTTCC
CCCTCTCCGTCATCCACATGATGCTAAATCTTTCTCGTGCGCCCG
Right flanking sequence: Indices 4207 -- 4706
AAGAAATAAAAGAAAGGATAAAAGAAAGGCGAAGGAGGATTTCTTGAGAAATCTTGTAGTTGAGG
AAGTGGAAAAGTATCTAGACAAATATAAAAAAAATTTCATGTCCGAGTTCCCTCCGAAGTCACCC
TTATATAGAAACGACAAGTTTCTTGAGCAAGGTGAGCGCTCAACTTCTACAGGATGCCGTATTGC
CAAATACGGCAGACCCGGCAGCTATGCAATTACTTCATTCAGTCCACAATAATTTGGTGTCCGAT
TTTCGGCTAGTGGACAGCTATACCAATAATCCTCTATACAGTTGTATAAGATTTTTTCTAAAGGA
TTATCGGTGAGCAAGAATTCAAATGTAGTTTTTAGTTTCGTTAGTTAACCTACCTTTTTCTTTTG
GTGGTGAGTTTCCTTTTTTATTTTTTTCGCTATGCGCCGCTACGCCAGCAAGGAGTGCCACGCAC
AAGCAGAGCGAAAACAAACAAAGCAGGGTATTCGTTGGGGGAAAT
Found at i:28167 original size:29 final size:29
Alignment explanation
Indices: 28133--28222 Score: 171
Period size: 29 Copynumber: 3.1 Consensus size: 29
28123 CTCGAACAGC
28133 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28162 AAAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
*
28191 AAAGGAGAGGTACTTTAGCAACTCGACTG
1 AAAGGAGAGGTGCTTTAGCAACTCGACTG
28220 AAA
1 AAA
28223 AGGCGTTCCT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (29 bp):
AAAGGAGAGGTGCTTTAGCAACTCGACTG
Left flanking sequence: Indices 27633 -- 28132
CGAATCTTCTAGCATGTCGGAAGTATACGTAAACCACTGAGAAGAGGCCTCGGTTTGGTGATTCA
CTACCTCCCCAGACGAACCCGTCACAGCATACCATAGAAAGGGCCCCAACAGGGGCAAAGCCGGA
CTCACTAGGTGGATGACTTCGATCCGTATCAAAGATCCCACGAACCCAGCGGAAAAGACCAAGAA
GAGATTGAGAATCTCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATAAAAATAGGA
AGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGA
AAACGTTTGAAAAAACCTGCTACGGAACTACCGAGCAGGAGTAACAATAGTCGAACTAGATTGTT
AATAACATAATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCTTTATCAGAGAGGGGCCCCGT
TAGGGGTATTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGC
Right flanking sequence: Indices 28223 -- 28722
AGGCGTTCCTCGGAGTGACTCGAGCACTTGTCTAGAGAGGTGCTTTAGCAACTCGACTGAAAGGA
GAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATGTTA
CCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTTTAT
ATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATTCGAAC
CTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCACTCCCC
GAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGATATCC
CCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGAAAGGG
ACAAAAAAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGA
Found at i:49157 original size:27 final size:28
Alignment explanation
Indices: 49098--49171 Score: 132
Period size: 27 Copynumber: 2.7 Consensus size: 28
49088 AAAGAGCCTA
*
49098 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49126 GCTTTCTTGGTTTGATGAGC-TATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
49153 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
49172 TGAGTAACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 48598 -- 49097
TACCCTTTCTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTAC
TTGCTATATTCCCGCGTTCTTGCATGGCTCGCGCGCAACCCCGCCCTGCTTCTCCCTTCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 49172 -- 49671
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATTTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:61935 original size:12 final size:12
Alignment explanation
Indices: 61918--61942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61908 AGTGAATGAT
61918 TGAACTGATAGC
1 TGAACTGATAGC
61930 TGAACTGATAGC
1 TGAACTGATAGC
61942 T
1 T
61943 TCAAAAGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TGAACTGATAGC
Left flanking sequence: Indices 61418 -- 61917
GGGGCGAAGCCCACACCACACAGTTGTTCAATTTGAATGTCATTCTCGACTTTATCCCTTCTCTA
ATCTAATATCTAATAGGGCTGGGTGTTTGATTTCAGGCCCTTTCGAGGAGGGTATCTGATTGGTT
AATGTCAGCCCGGCTCGCATGGACTTCCGGTGTTTCTTAGTTGACAACTGCATTGAAATTAGAAG
TTCTCCAGTTACTCCTGCACAAGCAACAGCAGTTATGGATCTGATTGAGGAGCGCTAGGAAGAAT
GGATCGAACGAGAAGGATTAGAGCAAGTTCCGTTCTGGGTGAATCAAGAAAGGAAGTTCCGGGAG
TTCTGTGTCCCGAAGAGAGAAAGCTCACTAAGAACTAGCTTGGCCGTAGTTCCTCGTAGGAGATA
GACGGACCAAAGGCGTTCCTCGAGAAAGGCTGACCAATTGCAGATTCCGAAAAGAAATAATTTCA
CTGTCCTAGTTATGCGAGACGCCCTCTTCCTAGCGAGTGAATGAT
Right flanking sequence: Indices 61943 -- 62442
TCAAAAGGTGACTCTTCTCTTTCCTTTTGGTTAGCTTGCAATACAATGCGGATCAGCGAGACTTG
CTTGAATGCTTGCTAGACTTCCTTATTCTTCTTTTGAAAGCAGCTTTTACTCAGATAGCTACTTC
TGCAAGCTAGTAGGTTCAGTAGTCACAACTGATTACCCTCTTGTTTGGAACCTTGAGACGAAGGC
TAGCTCTTTCCCTCTCCTTTTAGTTTCTTAGTCAAAATGGGTGATGGTATTCTGCCTAAATAGTA
GACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAA
GGAACTTATACTTATTAGATCTAATAAGTACATTAGACCTAATAGAATTATTTTGCTGTATCCAG
ACTAATACCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACT
TGTTACAAATAACATCTTGTTGTTGCATCGAAACATATAAATGTT
Found at i:69135 original size:22 final size:22
Alignment explanation
Indices: 69107--69155 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
69097 CTCGCTACGC
69107 TCGAGATCTTTGAACCTTTCAG
1 TCGAGATCTTTGAACCTTTCAG
*
69129 TCGAGATCTTTGAACCTTTTAG
1 TCGAGATCTTTGAACCTTTCAG
69151 TCGAG
1 TCGAG
69156 TGCCTTCGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TCGAGATCTTTGAACCTTTCAG
Left flanking sequence: Indices 68607 -- 69106
AGCTAACCCCTGTCCAGTGCCTGGCAGAGCTAAGGGGCTTCAATCCTTATTCCTTATCCCCATCT
TCGCCCAGGCTAACGGGGCCTTACTTATTCAGGGGGGAGCCCCGAGAAGCACTGTTGAGAAGAAG
ATCCTAGGCCCCTCTTCATTCTCTACAGGGTTTCTTTCTTCAATATATATATAGGTGACAACGAG
CGAGGCAGAGATGGAAGAGATCAAAGACGAGAATAAGAAGCCAGTAAACTTCTTCCTTTTTGATC
ATTTTGTTTGATAGAGGGGGATAGAAAAAATGGACAAAACTGACTCGCATTTCTCATCGAACAAA
TACGAAAAAAGAATCATATTGAAAACTGAAACCTCACCTCTCCTCTCGTTTCACTCTCGAGGAAC
GCCTTACAGTCGAGCTCCTTTGTCACTCCGTGCCTCTCTAGACAAGTGCTCGAGTCATGACTCCG
AGGAACGCCTTTTCAGTCGAGTTGCTAAAGCACCTCTCGCTACGC
Right flanking sequence: Indices 69156 -- 69655
TGCCTTCGGCCCTCTCCCACCAAGGATAAGGTCTCATTAATTAGTTGATGAGGGGTCGAGTTACT
GCGTTCCTAACCCAACTCCCTCCTTCTCCGAGCTTTGTATTATAAGTGATCCGAACCTGCCCGGA
GTGAGCCTCCCATAGAGGCAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTTGGAG
AGGACTCAGCTGTTAGTTAGTATCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTAT
ATACGCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGA
TCGTAATAAGTCGTTACTACTAGCAATGACTTCCTTTTTCATTACTTCATCCTTGCTATACCCCT
CTCCTTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAAGTTCGATCATTGACA
AGGTTCAAAGAAAGGGTGGGCCGTCGGTTTGAATCCAATATTATG
Found at i:71574 original size:36 final size:36
Alignment explanation
Indices: 71527--71613 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
71517 AAAGCCTGAA
71527 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
71563 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
71599 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
71614 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 71027 -- 71526
TCTTAGGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTA
GAATCTAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAG
AAGTCAAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAA
GGAAAATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTC
TTGTATGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCC
AAGAGGAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGA
CAATCTGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTG
AAACCAACAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 71614 -- 72113
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCT
CTCCTTTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGT
ATATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAA
GGCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAAT
CTCTCATCAGTTACGAAATATATAGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCT
CAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGG
AGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGA
TCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTTGGG
Found at i:71754 original size:20 final size:20
Alignment explanation
Indices: 71729--71766 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
71719 GTGCTCGAGT
71729 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
71749 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
71767 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 71229 -- 71728
CATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATG
AGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAGGA
GTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTG
AAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAA
CAAGACCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCAA
TTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGAA
AGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTGTTCACAACCTCTCCT
TTTCAGTCGAGTAACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 71767 -- 72266
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTAAGCG
TTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTC
TCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCAT
CGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTCAGAG
AGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCTCGCCCCCTTTCTCTGACG
AGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAGGGAAAAGAAGA
Found at i:88944 original size:12 final size:12
Alignment explanation
Indices: 88927--88953 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
88917 GAGGTTCCCT
88927 CTCGAGGAACGC
1 CTCGAGGAACGC
88939 CTCGAGGAACGC
1 CTCGAGGAACGC
88951 CTC
1 CTC
88954 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 88427 -- 88926
CCATGCCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATAA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TTATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGGGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 88954 -- 89453
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCCGACAGGCCTTTTCCCTGTA
GCTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACAT
ATTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGT
TCATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAG
TCTTAACTAACGTCCCTATGAATTCTTTCTCTCTCACATTCTGAATGCAGATATGATAGAGCAGA
CGCAACTCCGAGAACTAGATTCAACCTTTGCTTTCTTTTCCTCTG
Found at i:116464 original size:14 final size:14
Alignment explanation
Indices: 116445--116474 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
116435 TAACAAGCGA
116445 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116459 CGGAGGCGGGTAAG
1 CGGAGGCGGGTAAG
116473 CG
1 CG
116475 ACGTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.57, T:0.07
Consensus pattern (14 bp):
CGGAGGCGGGTAAG
Left flanking sequence: Indices 115945 -- 116444
CTCTTTCTCTATCTCGGTCTCGGTTTAGCGATAGGTTGCTCTCAAACGATAGCCAAGTTTGATTT
GCTGTTTTAGCCTGGGTACGTACACATACGCGTACTATAGAATCTAGATGTCTGATTGGTCTCCA
TAGCTTGATTTGCTTTCCTCCTAGCTGGATGGGTTTCTTGCTTTCTGCCTTGATTGAGAACCTCG
AATCGTTGTTATCGTTTTTAGTAGAATTGGGTTCTTAATAATAGGCATGCTGTCTCCTCTTTTGA
TTATTCCTACACGCACGAGAGGAGCAGACGGTTTTTCGTTGATGGGCAGGTGATAAGATCTGTAT
TGGATAAGTTTCTTTCACCTGTACCATGATATGCCTGATTGGCTGTTTATAGAATTGGTCCAGGA
ATGCTGTCACTCAATTACTAGGTCTTCTTCCCACGTGTACGTAAATATAAGAGAGTGAAGGCTTT
CACTAGCGCCTAACGTTTTAGCTAAGGGAAGCAGATAACAAGCGA
Right flanking sequence: Indices 116475 -- 116974
ACGTATTAATAGTTAAGCGACGGAGGTAAGCGGAGGAAGCGTAGGAATCGGTTACTCAACTGCCC
TTAGACTAGTGTAGCCCGATAGGACTCCTTTAAATGAGTCCGACGGCTAACAGCTAATACCTGCT
ATCTCGGCAACTCCTACCGATCAAGCAAGGAAGAAAGCAACTCTCGCTGGAGGGACAACTCCAGC
TCAGGCAGAGCTAACCATTGAAGAACTAACTGATAGAACTACAAGAAACCAAAGGAAGAAGGTAG
ATACTTAAGTTAACAGTCAAACAAAAGAAAGCAAATGAAGGCACAAAGAAGGAACAAAGGAACAG
ACCTTAGAGAAGAAGGAGAACAGTCACAGATAGATTCAAAGCTAAGGAGGAAACGAGTAAAGAAA
ACAGATGGCATCTTATATAGAGTATAGAGAAAGATTCTCACAATAAAAACAAGAAGGAGAATTTG
ACTCTTCAACCGGAACCCGCGCCTGTGCGCCTACCGAGCTAGCAA
Found at i:118987 original size:19 final size:19
Alignment explanation
Indices: 118963--119001 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118953 GCCAAAGGAC
118963 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
118982 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
119001 A
1 A
119002 TTGACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
AGATTTTACAAATGGTCTG
Left flanking sequence: Indices 118463 -- 118962
GTTGGAGTTGGTACTTCAACCGGTTCTTTTACAGTCCCACCTTCATAAGGAAGAACTGCCTTGAA
GGGTAAGGCAGGTCAAAAGAGTGGGCATCTTTCTTACCTATGGCTAACTCAAAAAAATCTGAGAG
GGGAGGTTGCTCTGCTCTGGATGCACCGGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTT
TCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTA
GTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATA
GACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGT
GGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGT
TATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGAC
Right flanking sequence: Indices 119002 -- 119501
TTGACCTTTTTATTCTTATGAGTAGGGAGTCAATCTGAAAGGATAGCAGTTTTAGAAGAAGGATG
GAGCAGAAAGATAGAAAGATCAGTTGCTGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTC
CTCTCACAAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAATTATCAATTTCATAAGA
GAAGAAAGATCGTTTTTTAAATTATCAATTTCATAAGAGAAGAAAGATCGTTTTTAGAAAAGAAA
GAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTTACGCT
CCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAGCTCTG
GCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTCCGATT
TGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGC
Found at i:119194 original size:38 final size:38
Alignment explanation
Indices: 119143--119251 Score: 218
Period size: 38 Copynumber: 2.9 Consensus size: 38
119133 TCTCACAAAC
119143 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAAT
119181 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAAT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAAT
119219 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
1 TATCAATTTCATAAGAGAAGAAAGATCGTTTTT
119252 AGAAAAGAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 71 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (38 bp):
TATCAATTTCATAAGAGAAGAAAGATCGTTTTTTAAAT
Left flanking sequence: Indices 118643 -- 119142
TTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGA
GCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTG
ACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATCCATTATGGTTCAAAAATATCGAA
AACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCAAAATGTCAATGTGAATCAGATCAAAAG
GTTCATCACAAATGTTATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGACAGATT
TTACAAATGGTCTGAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGGAGTC
AATCTGAAAGGATAGCAGTTTTAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGCTGGA
AATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCACAAAC
Right flanking sequence: Indices 119252 -- 119751
AGAAAAGAAAGAACGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAG
TGGTTACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACT
GAGAGCTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCT
GCGTCCGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCG
TGCCGAGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCG
CGTACTTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGC
CAAAGGAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTC
GTCTTCGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGAC
Found at i:138231 original size:17 final size:17
Alignment explanation
Indices: 138211--138249 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
138201 CATTTCTTTC
*
138211 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
138228 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
138245 ATATA
1 ATATA
138250 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 137711 -- 138210
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAACCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 138250 -- 138749
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGTTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTAA
ATCTTTCGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:144529 original size:18 final size:18
Alignment explanation
Indices: 144490--144531 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
144480 CTGAGGCGTA
*
144490 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
144507 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
144524 TATCCATC
1 T-TCCATC
144532 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 143990 -- 144489
AGAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGCACAT
GTGGTCTAAAAAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGATGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACCCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 144532 -- 145031
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:147080 original size:15 final size:15
Alignment explanation
Indices: 147060--147089 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
147050 ACCCTTCTTA
147060 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147075 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
147090 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 146560 -- 147059
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACTAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATAAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTTTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 147090 -- 147589
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTTTTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATCTGCCTATCTGTTTGAATCAGTTTATCCCAAG
GAAGTGTTTTACTCTTTTAATTGGTAGTTGGTTAAGGAATCCCTG
Found at i:186232 original size:34 final size:34
Alignment explanation
Indices: 186172--186239 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
186162 AAGAGTTTTC
*
186172 AAGGAGGAACCCAGCTTATCCCCTCTCAGCGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
* **
186206 AAGGAGGAACCCAGCTTCTCTTCTCTCAGAGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
186240 GAACCCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (34 bp):
AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
Left flanking sequence: Indices 185672 -- 186171
GTACTCAGGGTACACTGAACACCACAAAAATCTCGATGAAACTCTGAGAACTAGAAGCAAGGGAA
TCAAAAAAGTCTATTCTTGACGTGAACGGCCGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAGA
AAGCTTTTTGATTGATTTGTTTACTCAACTCGTAAAGGCTCATCAAACAGCGCTTTCTAGCTTTC
TTCAGGATTTAGCCTGAACCGATGCCAGAGCTCTCAGTGGTTTGTGGACTCGAACCACAGTAGGA
ATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACCACTTTCTTACTCGTAAAGGCAAAGAAAAAAG
GGATCCGCCTCGAATCAAAACGTTCTTTCTTTTCTAAAAACGATCTTTCTTCTCTTATGAAATTG
ATAGTTTGTGAGAGGAATGCAATAACTCGACTGTAAGGTCCACCAGGTCCGTAGGAGAGTCAGTC
TTTCTCTAAGCAAGCTGTTTTCTGGCCTATACGGAAAGAGTTTTC
Right flanking sequence: Indices 186240 -- 186739
GAACCCCTTTCCTTCCGTCAGTCTCCAATTTTCGTTAGTTCTCTCTCTCTCTTAACAGAGCGGAA
TTCTCCCAGTTTCCATCTTTCCTTTTAGAGTTTACCACTTGCCCTGACGGGGGCTACCGCTTTCG
TTCAGTTTTCTCTCTACCTTTTCTTATTTTGACTTCATTTTCAAATCTTTTATGCTCGGCCATAC
CAACATGGGAAAGACCTAGCCTTCCCTCCCTTTGAAGTGCATTTATCAGATCAGCTCCCAGAGTA
ACTAGAAAGAGGGTGAAAGGCCCAACTTCTTCATTCATGGCCTTTTTTGTTTCTTTGATTGATCT
CCCTTTCGTATTCATTCGACCTGAGGCGTTCCTCTCAGTCATACAAAAAAGAAAGGTTATTTCAT
GCAATGCATAACGGGTGGGCCTCCTATGGATTCCTCTAACTCAATGAATGAAGGGAGGAGTATGA
GGAAGGCCGGCTTTCTAGATGAAAATGAAAACAAAAAGGAAAAGG
Found at i:191591 original size:15 final size:15
Alignment explanation
Indices: 191571--191602 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
191561 TTGGCATTTC
191571 TCTTTTCTTGCTCTT
1 TCTTTTCTTGCTCTT
*
191586 TCTTTTCTTTCTCTT
1 TCTTTTCTTGCTCTT
191601 TC
1 TC
191603 GGTAGTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (15 bp):
TCTTTTCTTGCTCTT
Left flanking sequence: Indices 191071 -- 191570
CATGCCAGCCTTGACCAATAGATCAGTAATGTTTTGAGAAAGATAGAAGCAGAAGTTCTACTCAC
TTTTTGACCAAGATTGAGCCAGATACTTTATAGAAAAGATGGCATTTTTGATGCATACTATGTCA
TCAATATTCAGAGGATTGGACCATGTGATTCTAAGATCATCAACATATACTAGAATGTACAGAGC
ATGACCACCGCTCATAAAGAGAGAGAGATAAAGTTGACTGAAAACCAAGCTCAGAGAGTTCTTTC
AAAGCAGCAAGAGTAGTCATGAATCATTCTTCCTTCGATTGGATAATTCCCATTGGATTGTCAGC
TATTGCATCAAATGTTCCAGCTCCGCCCAATTCTCGAAGTCATGTTAGGAGAGGTATTTCTTACT
TGACTAAAAAGGTACGGAGTGACTTGACCCTTGGGAGAGGTATTTCTTACTCGGAGAGGGAGGCC
ACTATCAGCTACTCTGCAACTTCTCATCCCACGGGTTGGCATTTC
Right flanking sequence: Indices 191603 -- 192102
GGTAGTGGACGGGCTAAAGGGATTTGCTTACGCGCTAGCGCTTTCGTTCACTTTTCTCACATTTC
TAGTACCAACTAATACTAATGAATTCGGGCGAGAGTCTTCAAGTATAAGGAGATGGTAAATAAAC
AAGTGCTCCAGTTCCACCGGTTCCTAATTAATGGGGGAGTTGCTGCGCTCTCTTCTATGTAAAGA
GAGATTTTCCACGGTAAAACAAGTGCTTAGCTTTGTTACTACATCCCGATAAATAGGTTAGGTTA
CTTTCTTGCTACGCCCGTTGACTAACTAGAAGAAAGAGAATGAATAGACAGGATAACTAGTTCCC
GTTGGTTGACAACAGCTCCCTTTTCCTTTAGCTTACCAGTTATACCTAATGTGGCGCGGTCGACA
TATTACTATAGGGCGAGCTATGTTAGCCAACCCTTTCCTCAGCTGCAAGGTCTCTGCCATAAGTT
TCAACCCAAACTCAGGCAACTTAAGCACCGGCTCTAACTTGATAG
Found at i:205169 original size:21 final size:21
Alignment explanation
Indices: 205145--205201 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
205135 AAGGACAGAG
205145 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205166 AACAGATAACAACAGCATATT
1 AACAGATAACAACAGCATATT
205187 AACAGATAACAACAG
1 AACAGATAACAACAG
205202 TAGGAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (21 bp):
AACAGATAACAACAGCATATT
Left flanking sequence: Indices 204645 -- 205144
AAGCAGACAAGCTGGTGGATCATCTGATCTTGAAATAGGTCATCCCAGCTATCCCGCCCGATCTT
TTCTCTCTTTATTTCGTCAGGTATCTGAATCATACAATTCCTCGGATGTAGCTTTTCACATTGGA
CCAAAACAAGGCCCGGAAACCCCGCTAGCTTTGTTGATAGAAAGTTAGCTTCCCGTGCTTGACTA
GTAGGGCTAATGAACGACCCTTAACTATGGAATGTTACGCCTTTCCTCGTTTACTCACAACGTAA
TCAACTCCATTGGTTATTTTCCCGGGGGGAACACCTATAGCCCCAATAGACTGATTTAGTAGGTA
TGATGTATTACTAGGAGTCTCTAAGTTCCTGCTTTGGTTGTCCCTGTCCGGGCTAAGCGGAGTTT
AGCTCCGGCCGTTAATAAGAGCTTCCCTCCATTCCTTCACTACACATTCAAGCATAGGAACAGAA
GCTACGCTAACAACCTATTCCCACCTAACAACAGTAAGGACAGAG
Right flanking sequence: Indices 205202 -- 205701
TAGGAATATAGCCCTATAACAACAGCTAATAGCAGTAAGGAGATAACAAACAATCCATCAACGCT
ATAACCATACTATAACAGCCAGCACTCGGTACACAACATACAGTAGCAGCAGGAACTAATATAGG
TTAGTCGTCAGAGAAAAACCTATATTAGAAAGAAAGCTACTTCTCGGCCGGAAAGTACACTTCAA
AGAGAGGAGAGCAGAACAAAGGTAATGCTACCCGAACATTGAAGCCAGTCCCGGACAACCCGGAA
GGAAAGGGAAGACAGAACGACAATCACCGGAGGGATACGTACGGTATACGGGCCCTTCTCAGTCC
GCCCACAAAGAAGAAAGGAAAGGAGCTGCAACAGCTCAGCAAATCATAGTTGGATTCGGGGATAC
AACTATCAGGAAGAAAGCAGCACTTCCACGCAACAATAGAAGTATCGAGAAAGCAGCCCGTAATA
CAGACACAACCAAGGAAAGGGAAGCGGACAAAGGACGCATTCCCA
Done.