Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_008331
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 570354
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:27526 original size:18 final size:18
Alignment explanation
Indices: 27499--27535 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
27489 GGAATGATTT
*
27499 TAAGAGCAACAGCTCATA
1 TAAGAACAACAGCTCATA
27517 TAAGAACAACAGCTCATA
1 TAAGAACAACAGCTCATA
27535 T
1 T
27536 TTCTTAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (18 bp):
TAAGAACAACAGCTCATA
Left flanking sequence: Indices 26999 -- 27498
AGAGAGAGATTGGACTCGAGGCAGTGGAAGACGGCTATCTAGTGGGTATCTACCATCATTCCTCC
TTTCGGATCGGACTGGCCCATAGATATGAGATCAAGAAACCTACGGAACCAAGTGATCATCCCCC
GGCAAATAGTCCTGTTCCCGAGCTTATGTTACCGAACTAGCTTTGATCTACTTGCTGCTACTGAT
CCGTGACGCAGGAATCCAATCCGGACTTGTTCCCAATCAACGGATTATCCTGTTTCGTAGAAATC
CTGTCTACTTGTTCTACAATTCCATTCCAAAGGAACTTCTTCTCCAATCCCAATTAGCTCTTCTC
CTATTCCAATTCCTATTTAGATTGATATATCTATCAATCTCGGAATGGCGCTTTTATGCTTCCAA
TTCGGTCGGGAATCCCATCCCTCGAGTCCGGCACTGCCCACTCATCTAGTGATGGAGAAGGCGAG
TAAACTAGACTCAGCTCACTTGCCATAGCTCATAAGGAATGATTT
Right flanking sequence: Indices 27536 -- 28035
TTCTTAGCAGAACGGGCTATGCGGAATTCAAGTACAAGTAGACTTAAGCGAGCATCCCTATTCGA
TGAAACCAGACACTTATTAGATTAGGTAGTCTCCGCTTCTGTTTCTCTTCCTCTTCCGCCTAGTG
CCAGTCTATTCCTGTTTCGGAGGACCTCCACTCACAAAGTGCCAGAGACCAACCAGTTCTGTTAC
AATCTGAAATGGAGACTAGGATGCTGACTCGAAAGAGACAACTCTATTTGCTTGCTTATCAGCTG
GTGATTTGTGATTATCCTTTGGCCAGAGATCCTGATCATGGAGATATGCAAATTTTCAACACAGA
ACTGCCTTACCCGTCCCTCTACAAATTCGCCGTATGCCCCTTACCATATGATATGATGATGAAGC
TCCTTCTGATGAAAGATTATGGCGTGTGCCGTCGGAGTGTGAAAGAATGGATAGCTACTAAGCTG
TATTCATGTCAAGCCTTCCTTCCTCGGGGAATATACATATTGCAA
Found at i:33038 original size:3 final size:3
Alignment explanation
Indices: 33030--33061 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
33020 TCCTAACCTA
33030 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG
33062 AAGGCTTAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
AGT
Left flanking sequence: Indices 32530 -- 33029
GCTTTCACTATTATTATATTAAGAGTAGGGCTTTAATGAAAAGAGTAGGCCCTTCGTATCTTTCC
TCCAAGACGGAGCGAGACGGATAGGCAGAGCAAGAGCTCTTAAAGTCTACCCTACCCGGGCTGGG
CTAGCTTCTTCATTCATCCATTTAGGTCAGGGGCGGGCTTCTTCCCTTATATACGATGACATAGA
TAGAGCCTCCTTCTTTGATCCATTCATTGATAAAATAAAGTAGTCTTCGGGGGCAGTTTACCTTT
TGAATCGACAGTAGAGTAGGTTTGATCTTGCTTTCTCAATCTTTCTCTGATCCTAGCCGTGTAGT
AGATCCGGCTTTATTCGGCTAAAAAGAAGTGTGTGGCCGTCGTATCTGCTCGCCCCCTTCTTCAT
TCATCCATTTAGGTCAGAATGGATCCAGGGAACCTGGCTCGGGAACAGCCCTGAAAAAACACAGT
AAGAGAGTCCAATCTCTGAAATTTAGCATTTTATCTCCTAACCTA
Right flanking sequence: Indices 33062 -- 33561
AAGGCTTAGTATCTGACTTGATCCAATAGAGTAAGAACACACAGTAGATCCAGATTCCACACCTT
GCTGTGGACTGGGGAGAGAGCAGCTCTGCGAAGCTGGGCGTTCTGTGTGATTATGGAGGAACTGT
AGTACTCGCCCCAAAATGCAAGCCGGGATAGATACTTAAAGAAAGGGGGAGCGGTGGGCCTTCAA
AAAGGAGCGAGGGAGTGATGGGCAACCTTAGTCTATATGTTGCTCGTGAGCCGCCAAGTACCAGT
CTCGCAACAGTACTGGCGTTAAAGGATCGGTCCTTCACTTGCGGATCGTTCGCGAGTCGAACTCG
CTCTCTTGCCACGCCTTTGACTCACGAACTCGAGTCGGACTCATTCACTGCTTACTTTTTTGAGG
ATCGTTCGTTCTTCACTCTCTTGCTATTACCCGCAGGGAGCGCAGCAACCGACGGTGCATATTAT
CATATAGAAAGAAGCGAAGCGTAGCGATTCGTACTACCGGAAAAG
Found at i:36114 original size:18 final size:18
Alignment explanation
Indices: 36093--36130 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36083 GACAGCTCTA
*
36093 TCTCAGAAGTGAGCTCCG
1 TCTCACAAGTGAGCTCCG
*
36111 TCTCACAAGTTAGCTCCG
1 TCTCACAAGTGAGCTCCG
36129 TC
1 TC
36131 GATCTATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (18 bp):
TCTCACAAGTGAGCTCCG
Left flanking sequence: Indices 35593 -- 36092
CCTCTTCTTCTTCTCTCTCTCCCTTCACACAATTGTTTCATAAAGACCCGAATCTTCGTATTCTC
AGACAGCCTCACCTCAGACCTTACATTGATCACAAGCTTCAGCCTCGTTCGATGCCGTGTATTTT
TCTTGGTTATGCACCACAACAGAAAGGTTACCGCTGCCTTCATATACCAACTAAAAGAATTTTTA
TTTCCAGACATGTTGTCTTTGATGAAAACAGGTTTCCTTTTAGGGAGCTCTCTACATCTGGATTG
ACCATTCCCGAGTCCACCATCGAGCCGGCACTGGCACCATTACGAGGTAGGGCAGCTAGCGAAAC
AAAGTGCGAGGGATGGATTCGTGCATGAATGTCAGATGGTTGTAGTGGTGAAGCTCGTGATGCTC
TGGATGAGACTGACTCTATATGCCCGAAAGGACCAATCAGGTGGATCATTTGGACAGAGGAAGAG
ATGGGTGGGTGCACTGCCCTGCCGCAGAGAAAGAAGACAGCTCTA
Right flanking sequence: Indices 36131 -- 36630
GATCTATCTTCTCGAGAGGAGCAGTTCAAATCACCCTGTACGGATCCATTGGGATCTGGTCGAAG
TAACGGGTACCAGGTTTTTCCTGGAGTTGCCTTTATTCGTTCATTTCTGGTTGAAATATGGGCTG
TTTTCTGTGTGGGTCTAGGAAATCCGAATCTGCTTTCCATAGGATCGTTTGGATATTAATCGATT
AAATAGGTGTCTTCTGCTGCATTTCGAGTTAATATGTGTACTCTACCGAACGAGGAGGGTCGAGT
CGAGGGAACACTTCCTTGACGAGAATCGCTAACAACTCCTTTTCTTTCTTAAACCACTCCCGGAT
TCCTAATCATAGCTTTTGTGGGCCTCCCATCGGTAATGGTATGGGTTCCTCGGTCTCATTATGCA
TCTGTTTTGTTGCAGTTTTGAACTGTAGTGACACAGGTGCGTTTTAAGAATGGCAGCAGGTCTAA
TTATTCGTACTTTCGGTGCATACCGTAACCTGGCCTGGTGAAGGA
Found at i:38836 original size:5 final size:5
Alignment explanation
Indices: 38826--38921 Score: 192
Period size: 5 Copynumber: 19.2 Consensus size: 5
38816 TTTCCGGCAC
38826 CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA
1 CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA
38876 CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA C
1 CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA CTTTA C
38922 AGTAGTAACC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 91 1.00
ACGTcount: A:0.20, C:0.21, G:0.00, T:0.59
Consensus pattern (5 bp):
CTTTA
Left flanking sequence: Indices 38326 -- 38825
GCGGGAACTCAGATGACTTTGACTTGATACTTGATTGAGATGCTTGTTTTCCTAAGAGACCAATC
CTATGAATCTTCCTTGGACGATTGCCGAGTTGCCACTTCTGATTACCAAGATTACCAAAGACTTA
TCACTTCTCGATACGAAAGACCTGTTTCCCAGAACCAGAACCAGAATACGAGGAATCGATTTTGA
CCACTGCTTTGTATGGAATGGCATACGGCGCTTCTGCTACGAATCAATGTGTCAGTTCCCACTAT
CCTAGCGAACTGAACAATACCAATACGCGAATCACGAGCCGGAACAAACGAAACGAGTGCTTTCT
CCGGAACAGAGAACGAATACACGGCGCTTCGAATGGAGAATACGAGACTGAGGAAGAATACCTTG
ACTCGCTATCTCAAATTCGAATACAGAAATGCAACATATGGTGGAAATGCTATGAGGAACCACAA
ATCCTTCCTACTGAGGTGAGGAAAATACTAGATTATTTCCGGCAC
Right flanking sequence: Indices 38922 -- 39421
AGTAGTAACCCATAGTTGGAGGTAGTTCACTAGCACAGCCAGCCAATGAGTAATCAACCTTCCCT
TTAGCCAATGAGTAATCAACCTTTTCCCTTTCTGGACCAGCAAACAGAAGAACCAATACGAGTAA
CCCTTCAAGCCAGAAGAGTAACCCTGAAACCTACGAATAGGAAACTGTCTTTACTTGAAACCGTA
AGCAGCAAACCTATGCCAAGGTCACTCATCTTTCCTAAAGACGTTGACTACGACTCTAGATTAGA
TCTGGTGAATCACCGGTACCTCTAGGTATGGAGATCCTTCGACAAGTTCTTCTTCCCCATTGGCC
AGGTCCCTCTGCATACATAGAATGTCATAGATAGAAACGATATCTCGTAACGGAAGACGATAGAT
TCTAAAACTTGAGGGACCACAGAATTTCGTTTTTCCTCGATAGAGAGTCCTAAGATCTGATCAAG
TGATGCTCACCATGGTCCAAAAGTTGACAAGCAGATTTTCTCTCG
Found at i:43858 original size:18 final size:18
Alignment explanation
Indices: 43835--43869 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
43825 AATCAACCTT
43835 AGTATTAGTAAGAGTAAG
1 AGTATTAGTAAGAGTAAG
43853 AGTATTAGTAAGAGTAA
1 AGTATTAGTAAGAGTAA
43870 CCACTTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.29
Consensus pattern (18 bp):
AGTATTAGTAAGAGTAAG
Left flanking sequence: Indices 43335 -- 43834
AGCCACGCCAAACCGAACTCTTATCACATTATTTGTAGGCTTTGCTATTCTTACTCCTCTGTGAC
CTTCATCAATCACTAGGCACAGTATCAGTTAGCGTGATATGGGTTGGTAAAGTAGTAAAGAAAGT
CTTAGTTATTAGGAAAGAAATGTTGCAGCCTATCTGCCACTGAGTTGGAATCGATTTGCTTAACC
TGCTAATGCACGGAGATTAGCCAAATTAGAGAATATGAGGACGTCGGCAATGGTTGGTTTTAATG
CTCGCACAGACGAAATAGAATACCGGATTGGACCTTAGCCGCTCGGGAATAGAATCCTTCACCAC
CAGGAAAGGCAATCGCCACGACGCTGACATCTTTTCATACGTACTAGACCCGGAATTCGGAAGAA
GCCGCTTACACGACTTCCAATACAGACAACTCAAGCAAGAGGTTTGACATCACTCCTGCAACTGC
AAGACAAAGACTCAATCAAGAACCAGAGAAACTTAAATCAACCTT
Right flanking sequence: Indices 43870 -- 44369
CCACTTCTGGCTCGTTAATGTTTCGCTTCTTTGTGAGCAGCTCCTTAAAGAACTTTGCATACATC
GGAACATGTAAGACAGCATCAAGGATGGGGATGGTAATCTGCGCATCTTGAATCATCTCAAGAAA
CTTAGCAAACTGCTTGTCTTCACTTGACTTCTCAAACCGTTCTGGAAATGGCTGCTTCGGCTTGG
TAGGTGGAACTGAAGTCGAACTGATTGATGATGGATCATTAGGAGCTATAGCTGGTGGTGTAGAA
GAACTAGGCTGTCCAGCAGTAGTAGTAGTGGACTGCTGAGGTACCTGCTGGTCCTGTGGAGAAGG
TTCATTTATCAGGAATCTACTTGTTGCATAATGCACATGCCACAAACGATAAAGTGGAAGCACAC
TCAGATGAAGAGGATGGTGAATTGATCAATAATCCCATGTCTTTTTTTGCTGAGAAATCTTGGAT
CAAGACATACAAGGCAGCATTGGTCAAACATAGGACTACCTAGGC
Found at i:67831 original size:5 final size:5
Alignment explanation
Indices: 67821--67845 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
67811 CCAAATTCTC
67821 TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA
67846 AGATGTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 67321 -- 67820
GGCTAAGGTTACATAGATTGTCTCCTATCTCTCCCCTGTCCTCTCGAGCTAATGACTAAACCGAC
CCACGACGAGAGGATCAACCACTGCCATAGAAAGAGCAGCGACTAACTAAAACCAAGGAATCCAT
CATCTGGCATATTGGCAATGGGCGAACTGTCCGAGTGTGGCGTGATCCGTGGATTCCCAGAGCCA
GCACTCTAACCAACTGAGCGATTTCCCCAACTTTCAATTGCTAAAAACAGCAGTTCTTTCATTTC
GGTATATTTATATATAGCTTTCGCCCTTTAGTTCAAACAAACTTCATCTCCTGCGTCGGCTCCTC
AAAATGGCCTAAAGTACCTCGCCGATAAGCGAGTTCAACCACATCGTGAACCAATTGAAGTCGGT
CGAGTACCCATTGGGCGATGAGTAGAAGGCACACTGCTTTTTTTTCCCTCTATGCCGGATAGTTG
GTCCACAACCTTACTTATATGTTTATGTGGCAACGCCAAATTCTC
Right flanking sequence: Indices 67846 -- 68345
AGATGTTTCAGTTCGCTAGGTTGTCTCTTGCCTGCCTGCCCGTGCTACAATTCCTTACTCAAAAG
GACTAGAGTGCTAAGCTGCCTTCCCGGCACCACCACTATAATGAATGGCTCAAACAAATAGGAGA
TGAGAGAGCCCTTTTGATCCTTTCTATTCTATAATATAAAGAGAAGCTTGTTCATCTATCTAGAG
AATGAAAAGGAACTAATGCCACTGATAAGAAATACATAGACCGTACGCCCACTTACCACTCTACC
ACTTCAATTCCATGACGGACTTCTCCGATACCTAGCTTGAGAGAGATCACAGGCATGTGGTGAAC
CATACCGAGAGAAAGAGCACTGAAATGAACCATATCGAGCACAGGTCTCACTCTACAAGTAAAGT
TCGATGAGCTCTTAGCGGAGTTGTGCCTACTATCTACTAAGTGTGTGCTAGGGAAAGAAAGCAAG
CAGAGCAGTTCTCACTCTGTCCGGTGACCAAGAAAGAAAGCTTCA
Found at i:78379 original size:20 final size:20
Alignment explanation
Indices: 78354--78391 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
78344 TGCTGCTAAA
78354 AAGAGGAAAGCCTCTAAGCT
1 AAGAGGAAAGCCTCTAAGCT
78374 AAGAGGAAAGCCTCTAAG
1 AAGAGGAAAGCCTCTAAG
78392 AGGGGGAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.26, T:0.13
Consensus pattern (20 bp):
AAGAGGAAAGCCTCTAAGCT
Left flanking sequence: Indices 77854 -- 78353
CTGAAGAAGAGGTATCACCTACCGCTTTGGGTAAGTTTAAGCATGAGCACTTTGTCGAATATGGC
ATCTTTTTAGCACCTAAGTCCTATATGCTTAAGGCATCTAGTGTGGACCAACCCATAATAAAGTT
TAAAGGAGCGGGTAAAGATGAGGCTGATGAAGAATGGTTCATCAACCAGCTAGCTGACCCTAGGG
CTAAAAAAGTGATTTCATATGTCCGAAAGTTCAGTAGAAACTTCCGTGAACTGTTGGTTCAAGAG
AAAATGTGTAAGTATACCATGGGGTTAGAAAGTAAAAAGAGGGAGTATGTGTTCGACAAAAATGG
AGTATGGGTTGATACTAAGCCCTGCCATATAGGTGACTTTGATGTGAAAAGTATCAATCCGACCT
CCTATCGGATAATTATGAATTTGTTAGAGGAGAATGAAGATCTCCGAAATGAATTTTCTAATTCG
GAAATCATGATTGCTAATCGGGAGATTAAAGCTGATGCTGCTAAA
Right flanking sequence: Indices 78392 -- 78891
AGGGGGAGACACCCCTTCTCATATTGAAGAATAGGCATGGAATGCATTCCCGAGCTCTATAGTAT
AGACCATTGCTGAAACAAGATATGAATGAACAATTACAACCGCTTCTCAAGCTAATACCAAACAG
AGCCCGAAACCACTCAAGTAAAGCAGAAGCTGAAACCAACGAACCTGTGCAGGCTAGGCCACCTT
TACTAGTCAGCTACAAAACAGAGGAATAGCGAGGCACCTTCCCGGAAACCAGATATGATCCAACC
TTTCACTTACAAGAGTCAAGCCAAGGAGAAGGCTAAACCCATTTCTGTATATGATCCGCCAGGTC
ATGTCATGTCTTGTGTCAAACAGATCATTAGTTGTGATCTTTGGTAATTGTCTTGTACAGCACAG
TACAGACGAAGATCAATACATCGGATTCCTTCTTGTCTGATTGGAAGGGATGGATTGTGCTTTGG
CTCATGTACTCTATAAGGGTTAGTAAACCAGGGAATGCCTTTGAT
Found at i:79780 original size:21 final size:21
Alignment explanation
Indices: 79727--79781 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
79717 ATCGTCACTA
** *
79727 TCTTCTTCACTCCCACTACCT
1 TCTTCTTCACAGCCACCACCT
79748 TCTTCTTCACAGCCACCACCT
1 TCTTCTTCACAGCCACCACCT
*
79769 TCTTCTTTACAGC
1 TCTTCTTCACAGC
79782 TACTATCCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.44, G:0.04, T:0.36
Consensus pattern (21 bp):
TCTTCTTCACAGCCACCACCT
Left flanking sequence: Indices 79227 -- 79726
GGATCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCT
GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGG
TATGGAGGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCAGCTCTTGAAGTTC
CATCTCTTAATGGATAAGGTTTTTCTCCTAAACATATAGGAAGGAAAGCCGGGTTCTTTTATGAG
GAAGAAGCAGTGCACGATTGTGCACCAATGCGCCATAAGAGCTAGCTTTGCAAAAGGAATTCTAT
TTCCACTCAAGACAAAAAGGTTATCCCTTTACCGCCAAGTATGAACTGAAACTCTTATTTCTGGT
TTTCACAATAAATATAGAATTACCTAGAACAATACCAGACGTATAATAACACACCTACAAGGACA
ACCACACCGAATGCCAGGTATCTAGGATTGTCACTATCGTCACTA
Right flanking sequence: Indices 79782 -- 80281
TACTATCCACCCCCTCTTTACAGGCACTACCTTCTTTACTGCTAGCATATTCTATAGTGGCATTC
TCCTCTACAGAATCTATGGTATGATCACCATCAGAGCATTTCCCCCAGAATTCGAATTTATCCGA
CAATTCCTCTTCTCTCAACTTTCTATCCAAGCAATCCGTTAAAGCCGTCCTTTCCACAACCGCAT
CATAAGCTTCTAAGATTGATGTACTAATCACTTCCTCGTATGGAATCCATACGAATAATTTACGA
ACTTTGAATAAATCAATAATCAATTCTATATCAAGATAGTGCGGGTCCACAGATATGAAATCTGG
TGCGCTCTCAGTATAACAGTACCACACTGTTACATAAGTACCTAATCTAACTAGTGCAAAGATGT
TCCCATAGACATACCTAACACTGTTGTCTGATTGTGATGTCACCACGTGTACTAAACATTGCAAT
ACTTTATGTTTTGCAGAAACACCGAAGTTTTCATACTTTTCTAAT
Found at i:82702 original size:5 final size:5
Alignment explanation
Indices: 82692--82731 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
82682 GGTTTCTGTG
82692 TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA
1 TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA
82732 ATAGTAGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TTTGA
Left flanking sequence: Indices 82192 -- 82691
CACTGGATCGAGTGATAAAATCCGAATTGTCAACCAACTGTGAGTGGAGTGCAGCTACACGAAGA
ACAGAAGGAAGGGTACACGAAGAACGGAGTCAAGCTCTTGTCGTCTGGTTTCAGGGCCAGGGCTG
GGCATAGATCTGGTAATGGAATGGTAACTGGCCTTCTTTTGCCACTTGGCGAGAGCAAGTTTTCT
TATCTTCGTACTCGTTTCGAGGGTGCCATTGGGTTGCGTACTTTTGTCCCATGGCGAGCTGCACT
GGTTCAAATCCATTTTCTGGTTTGGTTTGCCGAGGCAAAATCCTAGTGATGACGAAAAACACGGG
CATTTGTAAGTAGTTGAGTGCGCATGCCAGCTGTTCTGTTAAATTCTCCGCATGATCTTGTGATT
GATTATCCGGATCTAGAACCAGCTACGGGTGGGGTCTCCGCATTCCAGATAGCTTGACTTCCAAC
CGGCGTGCAATACTTGACTCGCCATCTCCGGCTGAGGTTTCTGTG
Right flanking sequence: Indices 82732 -- 83231
ATAGTAGAAGCTTGTTTCATAGGATAGGATTCGATTTGCAGGCAGGCATGCTCCGGGAAAGTGCC
GGTTATTCTCATGTTCCGGATCTCTTTCTTGGTCTTGGGTAAGGCGGCAGGCTCAGCAGGGGTAT
ATGATTTCGAATAGAACCAGTGATCAGTTTCCGTTTCGATCCACAAAGGATGCCATGCCGGTGAG
AATATAGCCAGTGATGAACCAGATCTGGATCTAGATGAGTTACCTTGCTTCAGGACTGGCAGGTT
TCTTGAATCATAGCTTACCTATCCCATATTCCGCCGCTTGAAGGGTTTAGGTAGGGTTTCCTAAA
TGAAGCAGCAGAAGATGGCCTAGCTTTAGAAAAATCAAGTACGGAAGTCCGCCTCGGAGTCCGAA
GAGAAGAACAAGTGCTGCTCACTTAGCTGGAAAAAAAGTACTACCTGCATTCCTGCACTAAAGAC
TATTTGCGTATCATAATTCAGTGAATCTTGTTTTTTTCTCCGATC
Found at i:91852 original size:21 final size:21
Alignment explanation
Indices: 91828--91889 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
91818 TTCCTTGTTT
*
91828 ACGTAGCTCTTCTGTTGGATC
1 ACGTAGCTCTTCCGTTGGATC
* * *
91849 ACGTAGCCCCTCCGTTGGATT
1 ACGTAGCTCTTCCGTTGGATC
* * *
91870 ACGTTGCTCTGCCCTTGGAT
1 ACGTAGCTCTTCCGTTGGAT
91890 TACTTGAGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.29, G:0.24, T:0.34
Consensus pattern (21 bp):
ACGTAGCTCTTCCGTTGGATC
Left flanking sequence: Indices 91328 -- 91827
AACAAAACACATAACTTACGTACCCATTGTACTTAGAGCCAATAAACTACCAAGAATCTTCTGTC
TCAACCACTTTCTTATTGTCTTTACATCGATTTCTAAATATAGGAAGGGAAAGTAACGGAGAGCA
AGCAAAAGAAATAAATCTATCAACGACCGACTTCGGACTAGAATCTAGAAACATACCTAAGGGAA
GAAAGCATATTTGAGGTTTACTCCTTCCATGTCTAGTAGGAGTGCGTGCTTCTTATCTTGACGCT
ATACATTCGGTTCAGTCAGTCCCTGAGACTTCCCAAGGTAATCTTACCAAACAAGCAACGGATTG
AGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATTCTCCACCACATCTTGCTTGGCTTGCTGA
ATCAGCATATGGATATGGATTACTTCATTGAATTTATTGGCCCGAGCTCTTGTGATTGGTCTACT
TGGCAGGTGGAATGGATCCTTAGCAGGTTCATGTGTTCCTTGTTT
Right flanking sequence: Indices 91890 -- 92389
TACTTGAGTCATTTCTTGGTTTACTTGGCTGCTCCGCAACATGCTGGTTCCTTTTGTCATAATAC
CTAACGGCTGTGGGCAGAATGAATGAAAAAGCAGATGAAAGACACTATACATACCAATAGAATGA
TAAATTTAGAATAAAGCTAGGTGACGTCACGGCATTTGAGAACCAATTGCTTCTTTTGCTTTTCA
CCAACCTTCATGTACAATCTTATTTCGTATTGGAGTACAGCCTATCGTAGGCCCAGCAAAGGCAA
GACGGAAAGCAAGCATTAAGTGAAGAAGCAAGGTCCAAACAAAGTAGTGAAAGATTTACATTGAA
AAGCTTCTCCATGTCTATATCTGTCCGATGGACCAAGTTCAAAGGAAACGGCTTCTCTACTGCAT
CAAAAAACCAATCCAATGAAAAGGTTAACGATTCCTATAAATTGAGAAAGAAGCATGTTCTTCAT
GCCCAAAAGCGGATAAAGTAGATGGAACCTGTTCTCTAACCTTCT
Found at i:93336 original size:25 final size:25
Alignment explanation
Indices: 93285--93340 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
93275 TCACGGCAGA
93285 TCCCAACAGAAATGAGCTACTTGGC
1 TCCCAACAGAAATGAGCTACTTGGC
*
93310 TCCCAACAAAGAAATGATCTAC-T-GC
1 TCCCAAC--AGAAATGAGCTACTTGGC
93335 TCCCAA
1 TCCCAA
93341 TGCCACCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.20
Consensus pattern (25 bp):
TCCCAACAGAAATGAGCTACTTGGC
Left flanking sequence: Indices 92785 -- 93284
AAGTGCCAGCTAGAATAGAAATCACTCGTATAATATAAGAGTTCTGTTCTCACTTCCTGATACGA
CCGATACGAAAGAAAGCATCTTCGTCAGAAACCCCGTTTGGATGATAGCTGATTTGACCTCGAGA
GAAAGGGGGAAGATTTGATCCATTTGAAAGCCAGCGCAGCGCTATCTCAGTGAATGGGATTCGCT
TAGGCAAATAGGCTCCTCAATCCATTACGAAGCCAGCAAAGAAAACGCTATTGGAGAGTTCCAAA
GCAATCCAATTCTCACTTCTGCTGCTCTGCAGCTTACCTAAGAGTTCTCACGCCTAGTGAAGATC
GGAATCGGAAAGGGAAGAACGTTATTCTATGTTCCAGGCAGAACAGAACGTCTGTAGATGCTAGG
TCAATTCCAGAGCCAGAGATAGAAAGACAGCTTGATTCGAACCAACCAATAGCCTGCCTCTACTC
ACTGTTGTCAAAGGAACAATGGATTTTATTTTCTATCACGGCAGA
Right flanking sequence: Indices 93341 -- 93840
TGCCACCTAACTACGAAATTGTTCGATCGATATTATTGAATAGAAAACGCAATTCTGAATTGGAT
TATTGAATGGATCGGATCCATGCTAATGAGTGAACTCAGTTGAGAAAACTTCTATCTCGTCAAGT
GCAAACTTCCATCTCTTCTCCCGATGGCCAACTCTTTCTAACTATCACTAGGCCGGGTATTTCCA
GCTCTAAAGGATGAGGAAGAGGGTTAGCCAGTGATTATCCCTCGGCCTGCCGGTCAAAGGATTTG
TTTACCACGGAATCACCTATTCCACGCGTGCCCGTGCCAAAGGTGCCAGGACCGATATCTTCTTT
TCACTACCGAACCGACCCATAGCTGTAGCTGCACCCAGTGAGTAACTACTAATGTTACGAACAAA
GAGAGTCGAACAGAGCTAACTCTGAGCTATTTGACTACTGGCACCGGCACTATTCCTTGGGTTGT
ATTCCCGTGGGCCACCTCTCCTCTACTTCGCACACCCGGTTGGTA
Found at i:98893 original size:5 final size:5
Alignment explanation
Indices: 98883--98937 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
98873 TGTAATTTAC
98883 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
98933 TATAT
1 TATAT
98938 ATAGTAGTAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Left flanking sequence: Indices 98383 -- 98882
TTGCGATTGATTAAGTTACATTACCTGCTGCACCGAGCATTGATTTGAACGAATTAATTACCAGA
CTTATTGGGGAGTGTGTACGACTTAGTGGAGTGTTTCCTTTTTAATAGAATCAGAGCAGAGGATT
GAATCGCATGAATGGGTTGAGCATTTTAATAGATATACCCTTTTTCTTAGGCATCGATTCTAGGA
TTGAAGAAAGGGGAGATTTCCCACACTTGGAAAGATTCACCTATTGGGTGGGGCGTGTTTGAATT
ACCTACCCGGGATTTTTCATATTAACTGTAGCTAGGGAATTGACTGACTCTGATTAATATCTTTG
TCTAGCATTTCCAAATTGCCTCAAGACTGATACAGATTTTACGGAGTTAATTACCACAGGGCGGC
TTGCCCTAAGAGTATAGTTAAGTGGGTCAATTCCCACAGGGTTTAGTCAGTTCATTGACTAGTAA
ATGACTTGATCCACTCATTAGCATTGAGTGTTGTCTGTAATTTAC
Right flanking sequence: Indices 98938 -- 99437
ATAGTAGTAATGATGAGCACTTTTACCAGAAAGAGTTGACTGAGTTAATGGATTCGCTTGTTGGC
TAATCTGAATCGACTTACTTAAGTGTGGTGTTACCAGGCTTGGAAAGAAAACTTCTTTATGTGTT
TGATTTCCCTAATTTACTGGTACTCAAATACCTGCCAAGCATTCCCAATCTCAGTTTTTGTCACA
CAATAAGATCCAATTTGTTTAGACTCGTTAGGTTTGGTTTGGTCACCCATTACCTTGAGTGAGGC
CAAAGGTGTACACCTCTTGTCATGAAGATGTGATCATATCCACCGAAAGGTCTTGTTCTAAGCCC
AATCCTCTCGTCTTAGGTCCATAAACCAACAATAACGGGAGCTTCTCCTTTTTGGTTGACAACCT
ATGTTGGTCTGACTAAGCCCACTATCCTAATGGGAGGGTCCCACCTTGTGTCGGGGTAAGGCTCC
ACCTCATCTTGGGTTAAGGGCGAAGCTTGAAGCCAATTTCTTCAC
Found at i:100470 original size:18 final size:18
Alignment explanation
Indices: 100449--100486 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
100439 TCGAGGTGTC
*
100449 GACGGAGCTAACTTGTGA
1 GACGGAGCTAACTTCTGA
*
100467 GACGGAGCTCACTTCTGA
1 GACGGAGCTAACTTCTGA
100485 GA
1 GA
100487 TAGAGCTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (18 bp):
GACGGAGCTAACTTCTGA
Left flanking sequence: Indices 99949 -- 100448
GAGACCGGTGCTAAAACCTTTTCTCGAGATATCTTCCAAATTATTAGGGTCCTTGCTCCGGATCT
TGTTCCCCCGGTGCGAAAGCAGTTGGTTCCGTAGTTTGAGAATTCTGCTAATTCCAAGTATTCCA
TTATTATTATTATAAAAGAGAATATAAAAAGTAAAGAGGAGAAGGCATAACCAGAAGAATTGTGA
GAAATAAGTCAATTTATCAAGTTGAGGCATTTCGATTTCCAATCAAACCAACCCTCAAGACAGAA
AAAGACTCCCTCCCAAAATAACCAAAAATACTAGTTGCCTTCTAACGCATAGACTAGAGCGTTTG
TCCCATCCTTATCTAGTGGGCCAATGACATTACTATTCTACGCGTTTTCTGAGGAGCAACATGAG
AGATAGACTTGACACCGACCCACGAAAACGAAACTTTTTAGTCTAGAAAGATTCCCAACCCGATA
TTGAGATCTGATGACTGAACACTCGTTTGAATAGCTCGAGGTGTC
Right flanking sequence: Indices 100487 -- 100986
TAGAGCTGTCTTCTTTCTCTTGGTTTCCATCCTTCCGTTACGAGATATCGTTTCGTACAATACTA
CTCTATGCAATATGCAATTTCGAGAAGAGAGCAGAGCTAGCCCACCGCATCCATCCAGCCTGAAA
GGATTCACTCAACTGGACTCGCGGCTCTAGGTGATCCCAATGGATCCGTACAGGGTGATTTGAAC
TGCTCCTCTCGAGAAGATAGATCGACGGATCGGGCGAGCAAGCAGGGAGAGTGCAGTATTGTGCT
TGCGCCCTTAAATCAGAGAAATCGACAGATTTCGAGCCCGAAAAGAGAAAGTATCTCCTCTCCAA
TGAGAAAGTATCTCTCCAGCGAAAGAATCTCCATCTCCTTCCTTCGGGAAACAAACCTTCCTTCC
AGGTAGATAGCATTTCCACAGGAAAGAGAATCCGTATTGATTGACGTATTGAAACAATCAAGTCC
GTCAAGATTGACAGGCAAGTGCAAGTCCGTTGACATGACAGGATC
Found at i:117355 original size:6 final size:6
Alignment explanation
Indices: 117344--117368 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
117334 ACCCACCTAC
117344 TATAGA TATAGA TATAGA TATAGA T
1 TATAGA TATAGA TATAGA TATAGA T
117369 GGGCCTCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
TATAGA
Left flanking sequence: Indices 116844 -- 117343
AGCCATTCTTCATAAGTCAATAACTGGGAGCCAGTGTCATTAAGTGGCCTATCAGAATACAGGTA
GCAACCATACGCACTTGGCTGATAAATCCAGCTCATAAGCCAGGTCTGTGTGCCGAGTACAGCCG
TTGCCTCAGGGGAAGCGAACAAAGTCATTGGAATAGTTTATTTATTGGGTGGGTCCTTCTCTTCT
CATTTCAAGATCGATCATCTCGAGTCTCGGGCTGAATAACCTACTCTTCCTCCGATCTGTAAAGA
TGAATTTCAATACCTTGTTCTTATATGAGTTTCATGAGTACGATCTAGACTATACTTATTTTATC
AGGTTTTTTTCGCATAGCGAGTAGAGGAATAGTTTATAGTTTTGGAACCACCTGAGCAGGAATCG
CTGATCCACCTTCACTTGTTTCCTCTGGCTTCGATTCTTTTATTGTATAGTGGACTACTTAGGAG
CTTTAGCACTGACCCTCGTGAAAAAAAGAGCTGGGACCCACCTAC
Right flanking sequence: Indices 117369 -- 117868
GGGCCTCGTTCCTTTATAATACGATCTAGCTTGATCCATCATCCTCAAATTATGATAACTGCCTT
CTAGCCGCAGCCGGAGCTACTTCTAATCCGGAATCCAAAGGAGTCGAGCTTTTCGTACTACCATC
GCCCGGGCATCGCTTTCTTCCCACTGCTTTCGTCCAGTTTTATTGCTCCTCCTCTCAACTTATTG
TTCTTGTGAATACCGTACGTAGTAGTTCTTGTGAATATCAATCTAGGCGTAGGGCTAGGCTGGCT
TGCAAGATTCGCTTCGTGCCGTTGGCAAAACACTGGTATATGCTTCGCCCTTCTCTTCCTTTAAG
TTTAAGGGGACAAAGATACCGTCTTCTAAACTGAGGAGAGTTATGTATCGCCATAGCTTATCTGC
TGCCTTGTTTTACGAATCTGACTTCACCCGAAAGAACAATAAGAAGTCAATGGGTTTGGTTTCTG
ACCGCACTTCTCTACAGGCATCCCACCCGTCCTCTTCCTCCAGCA
Found at i:119082 original size:5 final size:5
Alignment explanation
Indices: 119072--119137 Score: 132
Period size: 5 Copynumber: 13.2 Consensus size: 5
119062 CGATTGACCG
119072 ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT
1 ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT ACTTT
119122 ACTTT ACTTT ACTTT A
1 ACTTT ACTTT ACTTT A
119138 TCGCACGCAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.21, C:0.20, G:0.00, T:0.59
Consensus pattern (5 bp):
ACTTT
Left flanking sequence: Indices 118572 -- 119071
TCCGATAACGTACCTATATGAGTGGGATGGATGGTAAATCATTTGCAGTCTTTTTCGGCAGGACC
TAGACACGGAGGTTCGGGAAGTAGCGCATGACAGCATTCACTGGTGAAAGGACTGGCAGCAGCGA
GAGCATCATAGTTGACATGGTCGGAGCTACAGTCCCCATATCCGTCTCTACTCTTTCTGTAATTG
ACTCCCTCCCGCTCCCGTCCATCAAAAAGTGTTATTTCCTCCAGCTCCCTCCGATGCCGGTAGAT
TAGATTAATTCATTGACAAAACCCATTGATTCCAAGCAAGAGGATGCGCCTAGCGCTAGTTGCTC
AATCCGTTGCTTGTTTGGTGAGAAAATCGCTGATGCGAACTCGGTAGTGCTACTGAAACCACTTT
GTGCATCTTCTGTTGCCAGGAAAGAAAGACGTGCTGGGTCAGTCCGGCACGTCACGCTTGCTAAT
ACGGCCCGGCTGCCCCTATACAGAAATAGTTTAATCGATTGACCG
Right flanking sequence: Indices 119138 -- 119637
TCGCACGCATAGATAGTTTCGACTGCAGAGGCTAACCTACTGTGATCTCATTTAGTTGGCAACTC
GACTCCAACCCGATCCGATCTAGAAGAGGATTTCTTTAAATCAATAGCACTTCTCTCTCAACTGT
GCAGTCGACCACAAAACCATTGAATTTCTATATGAAAATAAGAGATGCTTCTAGGGACAATCAAG
ATCACTAGGAAAGAGCTGAGTTAAAGTGGCACTCACTTGATTAAAGGGTTTCGTGTGTACTGACT
GATCTAAGTGCAGAACCATTCAAGAAACGTAATTGAAAGAAAGAAAGAGCGCTATTCTTCTTTAG
TTAGGTACTGCCATCAATGAGTTTGCTAAGAAAGACCCCGGTGGAATATTTGGCCTGCTTACTAA
CTTATAGGCTTCAGAGGGGACCCTTTCTCGCCCAGCCCCACCTACAGGGAGTGTAGGATTTCGTT
CGCAACTCTTTTTCCTAGAAATCTCAATCCAGCGAGTCACTACTC
Found at i:124311 original size:6 final size:6
Alignment explanation
Indices: 124300--124336 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
124290 GAGCTGCCAG
124300 TAGTAC TAGTAC TAGTAC TAGTAC TAGTAC TAGTAC T
1 TAGTAC TAGTAC TAGTAC TAGTAC TAGTAC TAGTAC T
124337 TTCGCGGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (6 bp):
TAGTAC
Left flanking sequence: Indices 123800 -- 124299
TCGTGCCGATGAAGGGCAGTCCGGAAGGTGGAGTTAGCACCGGGCCGGCCGGCCTATTCTTAGAA
GCTGAAGTAGGAGTAGGAGCACTCTTCTTCCTCAAGCGTAGCCGTATTAGTTGGATCCGGCATCC
TTTCGACTGGAGATACCCTCGCATTACCGGCTTCCCGGCATACTGGCAAGTTTACTTGACTCACC
CATTCTTGAGACTGGCCACTACTTTGTTTGATTTCCTTGTCACTGTAGTAAGCAAGCGGCACCTA
TTGATCTACTTCCCTCTAGCATCACTCATCCTTACGGCACTAGTCCATCCATCCCTCGACCGAAG
AGAGTCTTCCTCCTCACGGAACTAGGGTTTGGTTTCATAGACAAGACTTTCGAGCGCGACGTTGC
GCACATCCTCTTGCTTGGTATCTTTTCTAGTGTGCATCACATTCATTTTCCTTTCCTTTCATGTA
GATATGATAATCTTCGTGGCATCAACCTCATATAGGAGCTGCCAG
Right flanking sequence: Indices 124337 -- 124836
TTCGCGGGATTTGAAAGCAGGCAAACTTATGATGCGAGTCTAGTTAGATTAGAATAGAACCAGCT
GAAATCCGAACCAACCAATACGCTTCGCTTTCCTCTGCTCGTATAGACTCCGTTCGTGTTAGGAC
ATCCATAGCCAATAGTAATAGTAGCTAGTAGCTTCGCCCCCCCTTGCCCCCGGAAAGGTTCTCAT
TCCTCACTGGATCTAGTTGACTTGCTGCTACAGCAATCAATCTATCTATATGTTCCGGACGGAAG
AGAGAGTTTCCTACATTCCCATTCCCATGAACTGAACATCGGGTACCAACGATCTGGAATCCCGT
GCTACAGATATGCACCTGTGCGGAACCAACCTGGCAATCCTCCTGTCTATTCTTTCTATCTGGAC
TAGCGCTTCCCACTGGAGCTTACTACTTGACTAGAGCACTTGAACTTGTTAGTTTCATTAGTCAG
TTTCCTAGCATAGCAAAGTGAGTTTCCCATCAACGGATTATCATC
Found at i:125987 original size:6 final size:6
Alignment explanation
Indices: 125976--126008 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
125966 ACCAAGGCAG
125976 TATTAC TATTAC TATTAC TATTAC TATTAC TAT
1 TATTAC TATTAC TATTAC TATTAC TATTAC TAT
126009 GGAAATGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAC
Left flanking sequence: Indices 125476 -- 125975
CCGCCCTGTCCTCTAAGATATGAGATCCACCCACCCACACCCAAACCTGGAAAAGCGGCAGGCTC
TAGTCGAACTCCATACCAGAAGAGAACCCTTTCCGTTGGAAGAAAGAGAAAAGGGGCCGGGCTAT
GCACTTCAAGAGAACCAACCCAAGAAGCACTCAATAAACTATTATATATAGTCCTGGCCACCAGA
TCAAGCTAGCAGGAATGGGTACTACAGCACCAAGAAAGATCGATGGAAAGGGATATGAAACTATT
TTAGATGCACGCTCTAGCTCTAAAGCAAGCTTATACGCACTCATAAAGGTGCCGTCTAGTGCCGT
GAAGATAAACCGATTCTCTGACCATCCCTCGAGATAGCCTTTTATTCTCTTTAAGGATCTGGGAG
CCATATAAGGATGAGTTAGCCGTAGGATATGATTCCTTCTTGCTTGTTGGGAAGGGAATAAGGGG
ATCGAGAATGATGCTGCAAACAAGATAAGGGATTCACCAAGGCAG
Right flanking sequence: Indices 126009 -- 126508
GGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGTATAGAGCTAGCCCA
GAAAAGAGAATCCATGGCATGGCTATTCACTCAATCAAAAGAGAAGGTCATAATCTGGAAACTAT
TCTCATACAGAAGGGTTCTACGCTAGGAATCACTAAACTAGACGAGCACTTCTCAAGTGCCAGCT
AGGAAACTGTCTGTACTGTCCACCCGTAGAGAACTTTTAGTAGATGGAAGCGAGCTCCCTAGTCC
TATTCGACCCACTTGGAATTCCCTTATGTGAATCATTCATGTAGCATTGATATACGAGAATTCGA
GATTGCTCCACCGGGCCTGACTAGTAAATACAGTATACGGGGAAGAGAGTCTTCTGAACCTGAAA
CCTATGAAGCAAGGAAATCACTCTACTCTGCAAGCTATTCCACTGGAAAGGACAGGTTTCTAAAG
GAATGGGATTAGTACTACTTAATTAATTAAGGAAGGGATGAGTGC
Found at i:126016 original size:6 final size:6
Alignment explanation
Indices: 126007--126058 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
125997 TACTATTACT
126007 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
126055 ATGG
1 ATGG
126059 TATAGAGCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.48, C:0.00, G:0.35, T:0.17
Consensus pattern (6 bp):
ATGGAA
Left flanking sequence: Indices 125507 -- 126006
CACCCACACCCAAACCTGGAAAAGCGGCAGGCTCTAGTCGAACTCCATACCAGAAGAGAACCCTT
TCCGTTGGAAGAAAGAGAAAAGGGGCCGGGCTATGCACTTCAAGAGAACCAACCCAAGAAGCACT
CAATAAACTATTATATATAGTCCTGGCCACCAGATCAAGCTAGCAGGAATGGGTACTACAGCACC
AAGAAAGATCGATGGAAAGGGATATGAAACTATTTTAGATGCACGCTCTAGCTCTAAAGCAAGCT
TATACGCACTCATAAAGGTGCCGTCTAGTGCCGTGAAGATAAACCGATTCTCTGACCATCCCTCG
AGATAGCCTTTTATTCTCTTTAAGGATCTGGGAGCCATATAAGGATGAGTTAGCCGTAGGATATG
ATTCCTTCTTGCTTGTTGGGAAGGGAATAAGGGGATCGAGAATGATGCTGCAAACAAGATAAGGG
ATTCACCAAGGCAGTATTACTATTACTATTACTATTACTATTACT
Right flanking sequence: Indices 126059 -- 126558
TATAGAGCTAGCCCAGAAAAGAGAATCCATGGCATGGCTATTCACTCAATCAAAAGAGAAGGTCA
TAATCTGGAAACTATTCTCATACAGAAGGGTTCTACGCTAGGAATCACTAAACTAGACGAGCACT
TCTCAAGTGCCAGCTAGGAAACTGTCTGTACTGTCCACCCGTAGAGAACTTTTAGTAGATGGAAG
CGAGCTCCCTAGTCCTATTCGACCCACTTGGAATTCCCTTATGTGAATCATTCATGTAGCATTGA
TATACGAGAATTCGAGATTGCTCCACCGGGCCTGACTAGTAAATACAGTATACGGGGAAGAGAGT
CTTCTGAACCTGAAACCTATGAAGCAAGGAAATCACTCTACTCTGCAAGCTATTCCACTGGAAAG
GACAGGTTTCTAAAGGAATGGGATTAGTACTACTTAATTAATTAAGGAAGGGATGAGTGCTGTCT
TCCAGGCGGGGGTTCTAGCAACTAAAGCAGTGGAAATGTTCTCGT
Found at i:126750 original size:21 final size:21
Alignment explanation
Indices: 126724--126767 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
126714 AGTCTAGTAT
**
126724 AGAATCCGCTCTTTAAGGTCG
1 AGAATCCGCTCTAGAAGGTCG
*
126745 AGAATCTGCTCTAGAAGGTCG
1 AGAATCCGCTCTAGAAGGTCG
126766 AG
1 AG
126768 TCGATTAGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (21 bp):
AGAATCCGCTCTAGAAGGTCG
Left flanking sequence: Indices 126224 -- 126723
CACCCGTAGAGAACTTTTAGTAGATGGAAGCGAGCTCCCTAGTCCTATTCGACCCACTTGGAATT
CCCTTATGTGAATCATTCATGTAGCATTGATATACGAGAATTCGAGATTGCTCCACCGGGCCTGA
CTAGTAAATACAGTATACGGGGAAGAGAGTCTTCTGAACCTGAAACCTATGAAGCAAGGAAATCA
CTCTACTCTGCAAGCTATTCCACTGGAAAGGACAGGTTTCTAAAGGAATGGGATTAGTACTACTT
AATTAATTAAGGAAGGGATGAGTGCTGTCTTCCAGGCGGGGGTTCTAGCAACTAAAGCAGTGGAA
ATGTTCTCGTTCTCTCATGCTTCAAAGCACAGAGTTGTGCCTGGCATTCCCATTTGTCTCTCTCT
GTCGAAAGCTAGGTCAAAGGTGCCTGTGCTCGAAATGCAACATCACTCACTTGGTCTAGTGGGTC
GGGGTTCATCAAGCTTTTCATCTCCTGAAGCCACAAGTCTAGTAT
Right flanking sequence: Indices 126768 -- 127267
TCGATTAGGCCTTGTCATCATGTCATCGCACTCCACTGGTATCAAAGCAAAGTTCTCGGCCCTTT
TCTTATATTACTTTGATTATATTATAGAAGTGTGCCCGGTCTTGTCTCAGCATTCGAGGTTGGAT
GTGTTTCCTCAGTCATCGTTCGAGGAAAGCTCTTGGCATCGGTCGTATTCTCTTCTCGTTCTGTT
GGGAGCTGATATCCGTCATGGCAAGAGGAAAGGAATGGGATCGGCATTGCATTGGTTGGTACCAG
TAGCTGTAGCAGCAAGTAGGTCGTTGGGAGCTGATTGTGTTAGTAGCTAGAATCCTGGTTGGGAA
ACAGCATTAGCACGAAACCATTCTATCAAAGCTATTTCGAGAACAGCCAGCCTTCTTGAGTAATA
GGGCTTTCAGGCTCGCTAACCTCAGTGGGCTATCGTTATTTGTTTAGTATGGAATCGCATTTGGT
ACCCCCGCAGACGGAAAGAAAGCAAAGACGCTTCTAGGAATGCAT
Found at i:145193 original size:29 final size:29
Alignment explanation
Indices: 145151--145208 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
145141 GTTGAAGCGG
145151 GTTGCAGGACTGGTACTTGACCATTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
*
145180 GTTGCAGGACTGGTACTTGACCGTTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
145209 ATAGTAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
GTTGCAGGACTGGTACTTGACCATTATGA
Left flanking sequence: Indices 144651 -- 145150
TGTAGACTTAGGGAATTCTCATAGTTGATGATTATTTCCTACGAAAAGACAATAGCCAACAACAT
AGATTTGCCACGGACAAGGATCTTGCCACCTTATTGTGAATTCCCTTTTTTATTCAATTGTGTAC
TCGTTCCTGTTGTTGTGCCATTAGTGACTTGAGAAGACTGTGTGAAAGAGAGCAAGAAGCCGACG
CGAGGAGATCAAGATCACAGTTGTGCTCATGCCATTAATGCTGCCCAATCCACTCTGAGATCTCT
TCCAGCCCTAAATTCCTTAACCCATTGCCAAAAAGAGATGGGAAAAGAACCTCCTTTTCTTACGC
TCCTCTTTCTCAGAGAGATGGTGAACTTGCCTTGCCCTACGAAGCTGTGAATGATAACACGGGAG
GGGTACACCACAAGAATCTCTAAAGATTATGGAGATTCATCAAAGATTACGAGAATTGGAATTAC
AGGTATCAGATCTTCTCATTTGTGGTCCTTAGAACGTTGAAGCGG
Right flanking sequence: Indices 145209 -- 145708
ATAGTAAGAGTTCTTTCTACACTTGTAGATGCGTTAGGTATGTAGTAGTGAATTTTCTCCCATGT
GAACTTCAGAGAGATTCGTTAGATTACCAACAGATAAAGGAATTGGACCTTAAAAGCAATTTCAA
AAAAAGTTCAACAAAACGTTGCGTTTAAGTCTACCTATGGTACTAGGAATCCTTCCACTCAACAG
GCAACGATCCATAATAAACTCAGTTAAGCCGATTTCCTATTTAGAAAAAACCTATCACGAAACTA
TTCTTAGCGAATAACGTGCCTTTACTAGTAGTCCTTTCTTATTTCTTCAAAGAAAGATTCCCATT
TCGAATAAGGAAAGTCAAATAGGGAAGGAAAGAAAGCTTATGTAAGGAGAAGAAAGCGGCGAAGA
AAGCTAGCGATCGGAAGCCGTAAGCGTGGACATACAACCTGTGTGGTTTAGGTTACACAAACACT
CTTGAGACAGAGGCGGTAGAGAACTGATCAAACCTACTCTCATTC
Found at i:147064 original size:5 final size:5
Alignment explanation
Indices: 147056--147083 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
147046 CTTTTTCAAA
147056 GATAG GATAG GATAG GATAG GATAG GAT
1 GATAG GATAG GATAG GATAG GATAG GAT
147084 CCCGTATGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.21
Consensus pattern (5 bp):
GATAG
Left flanking sequence: Indices 146556 -- 147055
TAGTGAGTGAAGCACGAAAGAAAGTAAGCACAACCGGATTTCTCACTATGTCCTTCCTTAACTTA
AAGTAAACACCTTAGTGATTAGCTATAGCAAAAAAGAAGCTGATTCCCTAATATGAAATAGGGGT
AATCTGACTCCTAATATTTGAAATAGAGCTTTCCTTTCACGATCTTATTTTTGCTTGGAAAAAAA
GAATGAGAGTTAAATCATCATACCTGATAGTATAGGCGCATATTGCTTACAGTAGGTCTCGATGT
GTTTTTCTAGGGAAACTTTATCCATCATACCGTCCGGTGTGATTTCATTGTTTATTCTCCTGAGT
TCGTTGGTCCCAATTGTCGGATTGCAACTCTCGAAACATTGGATTCTCGGGCCGTGTAGGAACAT
CCAATCCCCGCTTCGAATGTGCTTTGCCTTACCAGCGGGCTATCCACCTACATCAGCATGGTTAT
TTCTATTTATATCATTGTTGCTAGCCGACGCTTTGCTTTTTCAAA
Right flanking sequence: Indices 147084 -- 147583
CCCGTATGCTTTTGGGAAGGTATGCAACACCCCGTCTCCACAGGCTAAAGTCAAGCCGGCAATGG
GTATCACGAACGGAAGGAACAGATAGAACGATTCTCCGATTTAGTCCTTCTGTTCAAATTACTCT
TCCTAAACCTATTCCTTGCATACGAGCGAGGCCCAGGCAAATACAACGTAGGATATGAAATCAAA
ACTACGATTGATTCCCACGAGCTAAAGGTCAATACGAGCGTTGCACTAGCGAAATCTAAAGGATT
TGTGTCCCCTCCTGCTTGTAGTATTGTATTGTCATCCGACAAATTATCTAGTTGTAGGCGTCCGT
TCAAAGCGGAAAGAAAGAGCACTGGTCCACGGATAAGCTAAAAGGCAGGATGCAGGTACTGTTAT
AGAAACTCGGCATGAAACAGGAACTAGGGACAAAGAAGAGAGCCAAATAACAAGTTTAGCAAAAG
ACCAAGCACCCGCAGGAAAGAGACACAGAGGAAAATGGCATTCAT
Found at i:153011 original size:5 final size:5
Alignment explanation
Indices: 153001--153085 Score: 170
Period size: 5 Copynumber: 17.0 Consensus size: 5
152991 ACTAGTTTCG
153001 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
1 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
153051 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
1 ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA ACCCA
153086 TAGTGAAATG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 80 1.00
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (5 bp):
ACCCA
Left flanking sequence: Indices 152501 -- 153000
AGACAGTCTTCCTCTATAAAACAACAACATTAGTGGATATAGACTAGGCTAAGGGACGGACTTCA
TCTCTGTTCTTACCCAAGGAAACTGGGTATCGGGGCGGTATAGTATAGTATAGGAAAGGAGTAGA
TCTGCCAGTATCTGCCTTCTGTTTGGGGCGCCAGGTCGAATACGTCAAATAAAAGACAAAGTGTG
GAACAGCAGATCTAGTTTCTTGGCATGTTGATCGATCAACCCTTTTGCGGGTCTATAGTGCCAGG
GCTCTCTTATAGACTTATAGATGGGTTTCTTGCTTTGGAGGCAGGCTATTGGAGTGCGAGGGTTA
GCCAGTTAGTTCTTTCTTATTTGAGGTAAGGTGATCCGCTATAGGCTATAGGACGAGAACGGGAA
TATGCAAATATACGAGTGCCAGACCCGAGAAAATATACGAGTGCAAATGCCAGCTGTTCTGTGAA
ATTCTAGGCATGATCTTCTCAGCTAAGTCAAGTTGACTAGTTTCG
Right flanking sequence: Indices 153086 -- 153585
TAGTGAAATGCAGTTTTTATTCTCCGCAGACAGGCTAGCGAAGGAAAATACGATGATGAGGAATA
GGCCCTGGTTCGAGAACGATAATACGAATACGACTGAGGACGAATACGCTATCCTCGAAACTCCC
TGTATGGTCGAGAATGAATGGATTCCCCTATGGCAATTTCTTATTCCTGCTATCATAGCCTGGCT
GGGATCTTAGCGGCACATTCTGACCTTGCTTCATAGACAGCGGTACCTTTCTCAGCTTCTTCTAG
ATAGAGATAGTTAGTTTCCTCTAGATAGCTAGTTTCCTTTTTTTTGGAAGATTGAGATTGACGCT
TGGCAAATTGGGTTGACGACGCGCCATATGGGTTTGAGGATAGTGCCAGAAGTGCCGTAGCTCCT
TTGCTGTTCGTGGAGGCTGGCTATTTGCAGTTGACTTCCTTCCCGAAGTGACTGGCTAGAATTCT
CATACGATAATATAATAGGAGAGAGATGCCGATAATTGGAGAAGG
Found at i:154809 original size:5 final size:5
Alignment explanation
Indices: 154799--154847 Score: 91
Period size: 5 Copynumber: 10.0 Consensus size: 5
154789 GGAAAGCGTA
154799 ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT -CTAT
1 ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT
154848 TTACGATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.09
5 40 0.91
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
ACTAT
Left flanking sequence: Indices 154299 -- 154798
TCCAACATAGAGTTCCTTCCCTTCAATGGAACAGCAATCGATGAATGGAGTTTGAGGATTGTCAT
AGAATAGAACAGAACTCGCCTCCACCTAAGAACTTCACTTTGAAATCCACAGCACGAACACGGCT
CTTATAGATTAGGTTTCCTGGGAGTTCCCTTTCTTCGAGTACTATCCATACAATATTAGTGACCC
TGCTCCTTTCCTTGAATTGTGATCTATTGCCTATGGTGGCTTCGGCTTAGGCTGTTGATTAATGC
CTTGGTGTGTTTTCTTCTTGTTTCTTCTCTTCTTCTTGTGATCTTGATTGCGCCTGTTTGCACTT
AGCTTGATGTGATTTTATTTAGGCTCAGCTCTCCTCTTTGACGAGAATCCGAAAACTTTCCTTGA
AAGGGGAAGTCCGCCACTCCACTAAGACCGCTTGCTTCTCATGCGCTGATGAAGTTCGTACCACT
TCTTGCTGTCGAAGAGCTAGGAATCCAGTCACTCAGGAAAGCGTA
Right flanking sequence: Indices 154848 -- 155347
TTACGATAATTTGATTGCTGACAACATCACGCTTCTCTTTCTCCAGCGTCATGCCTTGTGACCTC
TAGTTTCAACCTCCTAGCATTGGCTTCACTTGATTAGAACCATAAGCATTTGCATTCGCGACCGT
CCTCGTCCCAGGTTTTGTTCTTCTTTGCTTTGGTGAGGTATACCTCTATCAAATGTGCTTAGCCT
TTTCGCTAGTGCTATTTCATGCCATTGGTTTGAACTGGATAGAGGGGAAGGGCCTTACCTTATCT
ACAACTATCTAATTGCAATTCCGGATAGCATTATTCTTAGCCGAGGAAGGAACCGTTGATGGCGG
AGTTATTTGCACGGATTTTCCAGCTATATGAAGATGAGGCTAAAAGACGCGGATAGAAGTCCGAA
AATTAGTTAAAAAAAGGCCACAATCGTTAAAGAAAGGGACCTTGATCCTTTCATCGTTTTTGCAC
TTGAAAAAGAAATTTGCAAAGCGGGTTATTAACGAATTGAGTTTA
Found at i:170224 original size:5 final size:5
Alignment explanation
Indices: 170209--170242 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
170199 CCGTTATTGG
170209 TATGTT TATGT TATGT TATGT TATGT TATGT TAT
1 TATG-T TATGT TATGT TATGT TATGT TATGT TAT
170243 ATAGTAAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (5 bp):
TATGT
Left flanking sequence: Indices 169709 -- 170208
GTGGAGTGGTTTTGCAAGACAAGAATAGTTAATAATGAGATCATCATTTTAGGAAATGATGCAGA
ACTGGGTAGTGACATTGATCCAGAAGAAGCTCAACAGGCACTTGAAATAGCCGAAGCTAACTTGA
GTAAAGCTGAAGGTACGAAAGAATTGGTTGAAGCGAAGCTAGCTCTCAGACGAGCTAGGATACGA
GTCGAGGCTGTCAATTGGATTCCCCCATCCAATTGAAGACAATCCAAAGATTTCGTTGATACAAA
GAAAAAGGAAAGAAGGGTAGAAAAAGTTATTAGATAGCGAAGCGAAGTAAGTCCAATGCTATCTA
GTAATTTTTCTACCTACCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAA
TACTCTAACCACTGAGTTAAGTAGGCAATTTATCACCACAAAAGAAGCCCCATTACTTCGATCGA
TTATAGATTGAATCCTTTTTATAAGCAATACCGCTCCGTTATTGG
Right flanking sequence: Indices 170243 -- 170742
ATAGTAAACGGATCAAAGGGATATCCTCTGGCATTAGAGAATATTCATCTTGACAAGAAATTATC
TATATGTTAAGATATCTCTGACAAGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACGTG
CGCCAATGCGGAACTTATTATGCAATGAACATAATTGACCTTGTTGCAAAATCAATGTCTTACTT
CATGGATTCGAAAGAATAGAAGAACAGTAGCCTGACAATGACAAACAGCTGGTTCAGTCCGATTC
AGGTGCCAATTAAGGTGCTTACTCAAATAGAACTCCTATTGATTTGCTAGTTGATAAGGTAAATA
TCCAGCCCACTCAATGCTAGGCGTAATGAGGATAAGGGCCTCCAAAAAACTTCTTTTCGTTCTAT
GAACTTTAAGGTGTATGAAGTCTCATAGTAAACTCTTGCAGCGGAACGATAGAGACTCCATTTCA
CTTAGGTTGATTTAATTTAGGCCGGAGGCAGACCTAAGTAAAGGT
Found at i:171523 original size:24 final size:24
Alignment explanation
Indices: 171496--171544 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
171486 CATTAGGATG
171496 TATATATTAATCATCCTATTTTAA
1 TATATATTAATCATCCTATTTTAA
171520 TATATATTAATCATCCTATTTTAA
1 TATATATTAATCATCCTATTTTAA
171544 T
1 T
171545 TAGGTTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATATTAATCATCCTATTTTAA
Left flanking sequence: Indices 170996 -- 171495
CCCTAATATATACGTCTTTTTTCCATTTTAGGATGGATATCTTATGTTTCCTTTAGTATAGTTTT
CTTTTCCTTATTTAGTACTTGTTTATAGACTCGACGGTCGATTGCGCCATAGAATAGAGATCAAA
GCATTACCATACCATAGGCTCATTCATCGAAACGAAAATCAGAGAGACAGGAAAAGAAAAAATAA
TTTTGATCAAATCAATAGAAGGAAGGATCCCTTACCTGATTTGAATTTCATCCTCCTTTAAATAG
GATATGCTCTAAGTCTTCCCATACTTTCCTATAATGACTGCAACGATTTTCTCCATTTTGCGAAT
TCCTATTTTATTTGAAGTATATTACTATCATATACATTATCTAAATCGATCCACTTTAAATAAAA
TAGAAAAAATCGAAAGAAAAAAAAAGAAAGAGTAAATAATAAAACAGGATATTCTGTTTCATAAT
TCTGAAATAGAGTTCTTTTTTTTAGTATTACTCCTCATTAGGATG
Right flanking sequence: Indices 171545 -- 172044
TAGGTTCTAATCCAATTAGTAGTAAGTATTTTCTTTTTTATTTAATAGTCTCTGACTATCATTAA
ATAAAGGGTAGAGCAATTCTTTTTTCTAGAGATTCTAGAGAAAGTGAGACAAAGTGAAGCGAAAG
AGTTTTCTTTGTATAAGAATTAGGTCTATATCATATCTAAATAGAAGGGAAATCAAAAAGAAGGG
AAGTGGGGATTACATTGGATGAATCCTTAAGGAAGACATATCACAAAAGAAATAAAGGCTAAAGT
AAGCGCTCCTTGCCTTTGGTTTGAGCAAAAGAGATTCTTGTTTCACCGAGGAAAAGAGAGAAGTT
CTGGAGAAATATTCCAACTGAATGGACTAATTGCAGTTCCGCCTATTCTACATACACGATCACAT
AACCCCCTTCTTTTAGACTCACCTTTCAGACTATGAACCAAGCTGACTAGCACGCACTACACTGA
CCCAAGAACCAAGGAAAGAGAGTGCGGGGCCTTCCGTTCCTACTG
Found at i:188746 original size:40 final size:37
Alignment explanation
Indices: 188690--188788 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
188680 ACAGGTCTTT
* *
188690 GCAATACATCAGTATTCTTC-TACAACAAGAAGAAGAG
1 GCAATACATAAGTATTATTCATA-AACAAGAAGAAGAG
188727 GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
1 GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
188764 GCAATACATAAGTATTATTCATAAA
1 GCAATACATAAGTATTATTCATAAA
188789 GGCAATATCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 57 0.97
38 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (37 bp):
GCAATACATAAGTATTATTCATAAACAAGAAGAAGAG
Left flanking sequence: Indices 188190 -- 188689
TATCGTAGTCAGTTAAGCGAGAGTGACTTTCGCTTACGGGAAGCAGCACAGGCGAAGTACTCTCG
TGAATAGAAATAAAACCGCTAGTTCAAAGCAGTTCAAGCCAAAAAGAATAACCTCTTTCGGCGGG
ACTCAGTTCCAAGCACGGTGGACTGCGGGATGCTTACTCTCATCTCTCTTTCAGGATTGATTCCT
GCTCACGATAGCTTGCTTGGCTACTTTACTATACCTCTGAATCCTTCTCTACCCAACTGACATAT
CTCTATTCTCCGCGGCATCACTCAGTCTCTGATTGTCTTAAGGGCAGAGCTCACTCTCCCAACTA
TCCGGACAGGTATCTCATTGATCTTTCATTTTCTTGATCTTCTATTAAATGATGAACTTGCTAAT
GCAACTTATTCTACTAAATGCTAGAAGCAAACCAACATGCTAGAGACAAAGCTAACAACTACTAT
TCGAGAAAAGGAAGAAATAAAGAAATAAAACAACAACAGGTCTTT
Right flanking sequence: Indices 188789 -- 189288
GGCAATATCTCTACACACCACACCTGAAAAGCGCCATACTGAACAATACAATACTTATGCTCACT
ACACTCTTGTTCATACAGTACCAGCTACTCATAAGTGAGACAAGAGAAGTAGAAGCTACCGGATT
CACGTCCGCATTAGTATTAGTAGAAGCTACCGGATTCACGCCCGCTAAGAAAACCTCTTCTTCTT
TAGATCCTGAAAAAACGAAAATAAGTAAGAAGGAGCAGTAGTAGGAAGACTTAAGTGACTTCGTT
CATTTACGTTGAGATAGACGAGTAACTACTTTTTTCTATTTTTCAGGATCTACGGTCACCGCGGA
GGGCAGCCTTCACGATGAGCGATTGCTGTTCTTCCAGCAGCGCCCTCTTCCGCATTTCAAGAATG
CGGATTTGCCTCCGAACATCCTGTGTATGATTGTGTATCCAAAGTTGTGCATTGGGCATCCAAAG
TTGTGGATCGACGGAATAGAGAAACAGGGGGTCCTGAAGGAAATC
Found at i:196821 original size:29 final size:29
Alignment explanation
Indices: 196761--196822 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
196751 TGCATAGGAA
*
196761 AGAAAGGAGTGTGTTTAGCGAGTAATAGG
1 AGAAAGGAGTGTGTATAGCGAGTAATAGG
* *
196790 AGAAAGGAGTGTGTATGGCTAGGTAATA-G
1 AGAAAGGAGTGTGTATAGCGA-GTAATAGG
196819 AGAA
1 AGAA
196823 CAATAAAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.37, C:0.03, G:0.37, T:0.23
Consensus pattern (29 bp):
AGAAAGGAGTGTGTATAGCGAGTAATAGG
Left flanking sequence: Indices 196261 -- 196760
TTTATAATAGATCTATGCTGTAGTTCCGTAGCAGTGAATATCCTCCGCAAAGGAAATATTCGTAT
TCGTATTTTAGTAGAGGAGGCCTTGCCTCAACCTTAGCGTATCTCGGCTATGTCCCAATCGTTAA
AACTCTCGATTTGAATGCACTTTTACAAGCAACAAGAGTGCAATTGGCAACTGCCTCATATCGTT
CATCTAATGATGTGGTATACAACTATAAAAAAAATAAAATCTTTACATTGATCATATCCATGGCA
TGGGTCGTATCAGAACGAACAAGGAAAAGATTCATTAGCAAAAGCACCCGAAGCTTTGAAGCAGA
TGGATCAACATAACCACAATTGACCCTGTTTTCCACCTACTAGCAGCAGGAGTATTCATTTTGTT
CTGGAACACTTCCCAAATCGATATACGAAGAAGGGCAATCTCAGTATTTAAGTAAGAGATTTATT
ATACGTATGCTAATCCATGCATCTGGAATGATACTTGCATAGGAA
Right flanking sequence: Indices 196823 -- 197322
CAATAAAGGAATCAACACCTGCGTATCGTTCCATTCACTAGTACTGTACAACTACTACTAGCTTG
TAACACTCACTAGCAAAAGTCATTCTATTCATCGATACAGACTACTAGGGCTGAATACATACGTT
ACTCTCATAGTTTCACAAGGTTTAGAGAACTACTAGTTCTGTTTCATTCTACTAGTCGTTCCAAT
AGCACGGAATTCCCATCTCTTGTACCGGGACCAGTAAGACCTATTCCTTCTCTTTCTGTCTAGCT
TGAGGAATCATGGTGGACTTTTCTTTCTGTTTAGCTTTACTTATCAAAGACTTCTCCCCCCAGCG
GTGAAGGAAGAGGCCTGGCACGACACACAAGTCGGGAGACATCACTCCTCAATAAAATAAGCCCT
TAGGCGATTGAAGTGAGGCAAAAAGCACACCACCCTCGAGTGAACTATAGAACAAGGGAACTTGT
GAACAGTTCTATTGAAGGGTATGAGTAGGCGTTGAGCTCAGGACT
Found at i:203289 original size:5 final size:5
Alignment explanation
Indices: 203279--203315 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
203269 AGTGGTGTTT
203279 TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TT
1 TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TT
203316 GAGGATCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTCC
Left flanking sequence: Indices 202779 -- 203278
GTTTGTTTTGAAAAGAGAGGGGCGATAGGTTTCTGGTTGCAAGGAGGACAAGAGATGGGTGCTTA
GAAACAAGGGCTGCTGGACAAAGTATTCACAGGTAAGCTCATAGGCAAGTGATGAGTACAAAACA
TGGAATGGAAAGGTCAGTATAGCTTGAACTACGTAGTAAGGTTTAGTACTAAGCATGATTAAGTC
ACGGTAACTAAGTACCGGTAACGTTTAATAGATAGAAGTAAGTAACAAGTACCGGTTTAGCACAT
ATGGGTCAAATAGGCATACCGATAGGATAATAGGCTTGTACGCAAGGTCAAGTATAGGCTAGAGA
GAAAGACCGGTATATGTTTATGTTGAGAAGAAATGCATTGTTTGATTTCCGAAGCAAGTAAAGGC
GCGCAGCGAAAGGCATGCATGTTTCATTTGCAGGTGCTGCCGGTCTTCGGCTGAGCTTACTAAAT
AAAAGAAAGCACGGCCTGGAATCGTAAATAGACGAAGTGGTGTTT
Right flanking sequence: Indices 203316 -- 203815
GAGGATCTATGCTTTTCATGGCTCTCTTTCTAACGTGGATGACAGGTTTCAAATAGTGGATCAGT
TTCTTAATTTTCTAAGTGCTTTTCGTTGCCTTCTTCTTATCTTTATGTACCCTGGAAAAAGAGAA
GAATCTTCACCATTACCATCACCTCCAATGGTTGGCGTCCCTTTAATTGTCATTTAGTAGTAGAT
AGGTTTGTTGAGGACATAATCTCCCGGCCTTATTCATGCATGATAAAGGTAGCCTTTCATAGTCC
AAAGCCTTTGTGTGCTTTTGTATTGAACTCTTTTCTACAACGTGGAAGGATTGCCTTACGGGATT
AGCAATGGCTTAATAAAAGGATTCAAAAAGGGCTTCTCTTAGGTCCCATACTAGATGACCACCCG
GAACTGGATGTACTCGTACTAGAACATTTGGTGATTACCCACCGGGACTTCCTACTAAGTATTTG
ACACTTCCATCAAGAAGAAAACTCTAAAGTACTCAATCAATGGGA
Found at i:204905 original size:6 final size:6
Alignment explanation
Indices: 204894--204930 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
204884 TCTAAAATAC
204894 TATGGT TATGGT TATGGT TATGGT TATGG- TATGGT TA
1 TATGGT TATGGT TATGGT TATGGT TATGGT TATGGT TA
204931 GGAACAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (6 bp):
TATGGT
Left flanking sequence: Indices 204394 -- 204893
CTCACAAGTCCTCCATACGTCAGTTTCTATTCCAGCCCAGCAACGAAGGTCGGTCTGCAACATTC
CCTGGTACGAGTATGCAGCGTAGTGACTAGTTGATTCTTCAATTCCTTGAAGCCCGTTGCGTAGT
CCGTGTCGAGTTGTCCAATCCTTTATCAATAGGTACAACGGCAATCAGCGTCCTTCAATTCATGC
TAGTCGTTGAGAACTCAGCATGTCGTCGTATTCTGGCGAACTCCGAACCGTTGTTCCGAGTCAAG
TAGCAAAGCTAAGGGTAGGACGAATTATCAAAAATGGAGCATTGCCCTGCTTTCGTGTCGAGAAG
CAGAGTAGCAGATGACTTTCCCGAGGTCACAGACGTAACTCAAAAAAACTCATTCCTTTTGAATT
AATTTCGAATAGTTCTTATCTTTGAACCACTAACATCCAAGTATCAACGATGCGCGAGACCTTAC
AAACAATCTGGTAAGCTTGAGTGGACCGACTGAGATCTAAAATAC
Right flanking sequence: Indices 204931 -- 205430
GGAACAGCTTGACTTATCTCAACAAGTGCAATTTCTTTCAGGCTTATTCACTGAAATATTAGAAA
CCCTTTTTTCTTTCTTAATGACTTCGCTCTTCACTTACTTCATATCCAACTATTGATAGCCGGCC
TAGTTTCAAAGGATACCCAGGGCGCTAAGCATGAATAGGAGACAGTGAAAAACAGCAATCAGTAT
AAGAACGAAAACAAATAGTAGAAAGGAGTTAACTTGGGTATAGGTTTCTAGCTTGGGTGGGAGGA
CTCACTCACTAGGGAGGTAGCCGCAAAAATAGGAAACATAGGGAGTAGCAGCAATTTATAATAGG
AAAGTAGGTGTAAGCAGCTACCCGATAGAAGTCTAACGAAAGTAGGAAAGAGTTTATTGAGTGAC
TTGAGGATAACGAAACCACTATCTATATAGATAGGATTTCCTATGCATAAGATTTCTGAGTAGTA
CTTGAAGCTTAGCACTAGCATTGGCATTTAGTAGTAGTTCTGGCA
Found at i:208451 original size:6 final size:6
Alignment explanation
Indices: 208436--208481 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
208426 TGCTTTATCC
208436 GCCA-T GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCAT
1 GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCAT
208482 AGTAGAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.10
6 36 0.90
ACGTcount: A:0.17, C:0.35, G:0.17, T:0.30
Consensus pattern (6 bp):
GCCATT
Left flanking sequence: Indices 207936 -- 208435
TGTTGATCGGAACCTTTGAATTCTTCATTCAGGAATTGAGGTGTTCATACCTTAAGATACAGATT
GCAGGACGAGAGCTAAGAGTAGACCCAATAGTTGCAAAAGCAGGACGATATGATGCTGGGCTTGG
AATGGTTGACTATGCATCATGCCACGATTGATTGTCCACGCAGGAAGGTGACATTCCAGAAACCG
GGGACTAAGCCATTTTCATTGCAATTCAGACAAGTTGGTGATCGAATCACGACAATCTCAGCTTT
ACAGGCACAGCATCTAATCGAGTCAGGTTGTACCGCCTACCTTGTATCAGCCATGCAGACGAAAT
CGGAGGTCAAGAACCTATCATCTATTCCAGTGGTGTCAGAATTTACCGACGTCTTCCATGAGACT
CTACCAGGATTACCGCCTGAACGAGAGGTTGATTTATGCATCGAAACCAAACAAGCAACGGATGG
AGCAACTAGCGCGAAAGCCGTTGCGCGTTTTGGTTTGCTTTATCC
Right flanking sequence: Indices 208482 -- 208981
AGTAGAAAGAATAAGCTGCTTCTTGTTTAGGGCGGGCTATCTTGACTCTTGAGCCTGAGAGGGAG
AAGGCTTCCCGCGTGGGCGGATTAGCAATCCCTAGTCTTCCATAACGCGTATTGGACTTATGTTT
CCTCCTCCTCGAAGATGATGGATCTATCTGGTCACCGAAGCTAAATGGACCCGAGCTGTTGATGA
CCGAATAGAAAGGTTTTTTTTCAATGGCAAGTCCTAGATGATGTAGGCTTTGCTTATCCTGGCCA
ACCACAAAGTACGCATCTCATGTGCAAAGAGACGATCTTCCGTCATAGACTATAATAAATAGTAA
ATGGACCGATCACCAGTTTATTGGCTCGTTCATTCAGGTAAGGAGGCTGTGACTTACAAGATGTC
AAAGGGAAACCATTGTGGAAGTTCTTCGGTAAAGGGCTTTAAGCGAGTAGGGGTAGCTGATACTA
CGGCAGGGATTCGCGAAGAGCAACGCCTTACGATGTTCATGACCA
Found at i:214087 original size:5 final size:5
Alignment explanation
Indices: 214077--214113 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
214067 ATTTCATCTT
214077 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TA
214114 TTGAAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 213577 -- 214076
AGAGAATTTCCTCTATCAGTTAGTTACTATGGAAATGGAAATGGAAGAAGATAGAGGGGTCTTAA
CCACAGAATGTGTGAACGGTGATGATTTACATGTCTATAAGTGTAGATTTGCATCTGATGCACTT
CTAATGCACGCGTTAGCAAAAGTGTTATTAAACACCGTCTTAGTCTTAGTAGATGGATATGGATA
TTACACACCCCCGCAACTCACTAAGTTGAGGGATCTCAAGGAAGGCCACTATAAAGGCTTAGGTG
AACAGAATAACGTTAAAGCACTTGTAAAGATACAATACAATACAGTTGAGTGATAGTTTCTATCA
TACAAATCAAACTGATATATTAGCATATATTGATGGTATTATCCCCGATGGTCTTATAAAAGATC
TAACCGGACAGGTTGTTAGTCTACCAATCTATTCTATTCAGAATCATAATATGATAAATTACCCA
TGGGTCTCTCCCGTAGGAGAACTAACTAAAGTTCTATTTCATCTT
Right flanking sequence: Indices 214114 -- 214613
TTGAAATTGAAAATTGAAATTGAATTGATACAGTGTTTGATAAATGGTATCCAGGAGTACAATAT
AGCCGTTGGTATAACGAAGTATTTATAGCCTTCAAGTACGATGATTTTGTATGTAACCTAGAAGG
TCTTCAAAGTCTATTATCTACAAACCAACTAGAAGGATCTGTTGAATATATCGATTATATAAATA
ATTCGTATTTTATCACTCATAACGATGAAAAGTTTGTTTACCTGTATGATGGCCATGTTGAGGTA
AGGACCCTCCATGGAGGCCGATCATTCTGGGAAAAAAAGGTAACACATAACAAAACATCTTGAAA
GGGGTTAAGCAGGGAGATCTCGACTAAGATCGTAAAGGAGAGAGAGACTAGAGCCGCTTACTCAC
CCTAAGGCGGCAAGGGACAACAGAATCGAGGAGAGAGTCGAGTAATCGCAGAGTCGAACCACGAT
GAAGTTGTGCCCGCAGTGTTAGTTTGTAACGTATAACTTATCGAA
Found at i:214131 original size:13 final size:13
Alignment explanation
Indices: 214113--214137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
214103 ACTATACTAT
214113 ATTGAAATTGAAA
1 ATTGAAATTGAAA
214126 ATTGAAATTGAA
1 ATTGAAATTGAA
214138 TTGATACAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (13 bp):
ATTGAAATTGAAA
Left flanking sequence: Indices 213613 -- 214112
GGAAATGGAAGAAGATAGAGGGGTCTTAACCACAGAATGTGTGAACGGTGATGATTTACATGTCT
ATAAGTGTAGATTTGCATCTGATGCACTTCTAATGCACGCGTTAGCAAAAGTGTTATTAAACACC
GTCTTAGTCTTAGTAGATGGATATGGATATTACACACCCCCGCAACTCACTAAGTTGAGGGATCT
CAAGGAAGGCCACTATAAAGGCTTAGGTGAACAGAATAACGTTAAAGCACTTGTAAAGATACAAT
ACAATACAGTTGAGTGATAGTTTCTATCATACAAATCAAACTGATATATTAGCATATATTGATGG
TATTATCCCCGATGGTCTTATAAAAGATCTAACCGGACAGGTTGTTAGTCTACCAATCTATTCTA
TTCAGAATCATAATATGATAAATTACCCATGGGTCTCTCCCGTAGGAGAACTAACTAAAGTTCTA
TTTCATCTTTACTATACTATACTATACTATACTATACTATACTAT
Right flanking sequence: Indices 214138 -- 214637
TTGATACAGTGTTTGATAAATGGTATCCAGGAGTACAATATAGCCGTTGGTATAACGAAGTATTT
ATAGCCTTCAAGTACGATGATTTTGTATGTAACCTAGAAGGTCTTCAAAGTCTATTATCTACAAA
CCAACTAGAAGGATCTGTTGAATATATCGATTATATAAATAATTCGTATTTTATCACTCATAACG
ATGAAAAGTTTGTTTACCTGTATGATGGCCATGTTGAGGTAAGGACCCTCCATGGAGGCCGATCA
TTCTGGGAAAAAAAGGTAACACATAACAAAACATCTTGAAAGGGGTTAAGCAGGGAGATCTCGAC
TAAGATCGTAAAGGAGAGAGAGACTAGAGCCGCTTACTCACCCTAAGGCGGCAAGGGACAACAGA
ATCGAGGAGAGAGTCGAGTAATCGCAGAGTCGAACCACGATGAAGTTGTGCCCGCAGTGTTAGTT
TGTAACGTATAACTTATCGAATGTTTCCGTGGAAGCGGAAACAAG
Found at i:218209 original size:5 final size:5
Alignment explanation
Indices: 218195--218328 Score: 261
Period size: 5 Copynumber: 27.0 Consensus size: 5
218185 TTACTCTCTA
218195 CCTA- CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
1 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
218244 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
1 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
218294 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
1 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
218329 AGTAGATTGA
Statistics
Matches: 129, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
4 4 0.03
5 125 0.97
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (5 bp):
CCTAT
Left flanking sequence: Indices 217695 -- 218194
GCGAGTTCACCTTCCTAGTAACGTTTGCTCATTTCTTTCCTGAATCAGAGTTTTGAGTAGCCGGG
ACGGACATGAAATTAAGAAAGAGCCCGCACGATCTAGATGCACTGAAAATGGCTATAAAATATCC
AGTTTTAGAAAACAACACTCTCTCTCTCTTTACGAGAATTTCAAGTGGGTTGGTTCAATTCCTAG
CTTTTTTGGATTTGTATTGCCTTACGAACTTGCTAACTAAAAGAAGGTAGGTCCACAAACAAGTC
TATATTGGAATAGATAGAGAGCATTTTTCCCCCTTGTAATTTCACAAAAAGTGGAGAGCCCTAGC
ATTGAATGAACGTAGTTACTTATCGAATTACCTGAAGTGAAGGAATGCCCAGACTTATTTACTTG
TCCGAATAGATGGTAGGCCGTAGGAAAAGATAACTCATGCCTACTTTACTTACTTGCCCAAGCCC
TACCTACATATTTTACTAGTAGTTCTTTCGGAGAATTACTCTCTA
Right flanking sequence: Indices 218329 -- 218828
AGTAGATTGAGTCGAGTAGTGATGAGCACTTATATATACCAGTCCGAGTATGGAATCGAACTAAC
TCATACATAGGAATTCCTTTCAGGTTGTCTTGCATTTACTTTTTCTTTTATTTGTCTTGTATTCC
CGAAGAGACAGGGAAAGCTTTACCAGTTGAAAACTGCGGACGGATTAGCCCTCATTAACTTAAAC
TTATGAGTTAAGTTTAGTAAGGAAGATCTTGGCTTTGTATTGCCGCTTTTCCTAGATATAGCTAT
AGCATAGTAGTGCGTTTGCGATAAGATTGAATTGAAACTCGAAGTGAGAGCATGCATTTCCAGCC
ATACGGAGAGAATTACCCGCCTACCTGCCTGCCTAGTATAGTAGTTCTTTTGAGAAGAAGTGCGC
GCACATCTTAATTCCAACCCATTTCATGGATTTTCTCTAGCTACCTCATTTCAGTAAAGTTAAGC
GGGTCGCCCTTTAAAGCCCCAGATTACCTGGTGGGGCTAGAGTCT
Found at i:235434 original size:5 final size:5
Alignment explanation
Indices: 235424--235463 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
235414 CTTCTACTAT
235424 TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA
1 TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA
235464 CACAGAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
TCAAA
Left flanking sequence: Indices 234924 -- 235423
GATCGGAGAAAAAAACAAGATTCACTGAATTATGATACGCAAATAGTCTTTAGTGCAGGAATGCA
GGTAGTACTTTTTTTCCAGCTAAGTGAGCAGCACTTGTTCTTCTCTTCGGACTCCGAGGCGGACT
TCCGTACTTGATTTTTCTAAAGCTAGGCCATCTTCTGCTGCTTCATTTAGGAAACCCTACCTAAA
CCCTTCAAGCGGCGGAATATGGGATAGGTAAGCTATGATTCAAGAAACCTGCCAGTCCTGAAGCA
AGGTAACTCATCTAGATCCAGATCTGGTTCATCACTGGCTATATTCTCACCGGCATGGCATCCTT
TGTGGATCGAAACGGAAACTGATCACTGGTTCTATTCGAAATCATATACCCCTGCTGAGCCTGCC
GCCTTACCCAAGACCAAGAAAGAGATCCGGAACATGAGAATAACCGGCACTTTCCCGGAGCATGC
CTGCCTGCAAATCGAATCCTATCCTATGAAACAAGCTTCTACTAT
Right flanking sequence: Indices 235464 -- 235963
CACAGAAACCTCAGCCGGAGATGGCGAGTCAAGTATTGCACGCCGGTTGGAAGTCAAGCTATCTG
GAATGCGGAGACCCCACCCGTAGCTGGTTCTAGATCCGGATAATCAATCACAAGATCATGCGGAG
AATTTAACAGAACAGCTGGCATGCGCACTCAACTACTTACAAATGCCCGTGTTTTTCGTCATCAC
TAGGATTTTGCCTCGGCAAACCAAACCAGAAAATGGATTTGAACCAGTGCAGCTCGCCATGGGAC
AAAAGTACGCAACCCAATGGCACCCTCGAAACGAGTACGAAGATAAGAAAACTTGCTCTCGCCAA
GTGGCAAAAGAAGGCCAGTTACCATTCCATTACCAGATCTATGCCCAGCCCTGGCCCTGAAACCA
GACGACAAGAGCTTGACTCCGTTCTTCGTGTACCCTTCCTTCTGTTCTTCGTGTAGCTGCACTCC
ACTCACAGTTGGTTGACAATTCGGATTTTATCACTCGATCCAGTG
Found at i:238404 original size:21 final size:21
Alignment explanation
Indices: 238369--238428 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
238359 AGGGGGTGGA
* *
238369 TAGTAGCTGTAAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
*
238390 TGGTGGCTGTGAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
**
238411 TAGTGGGAGTGAAGAAGA
1 TAGTGGCTGTGAAGAAGA
238429 TAGTGACGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.42, T:0.18
Consensus pattern (21 bp):
TAGTGGCTGTGAAGAAGAAGG
Left flanking sequence: Indices 237869 -- 238368
AGGGCATTAGAAAAGTATGAAAACTTCGGTGTTTCTGCAAAACATAAAGTATTGCAATGTTTAGT
ACACGTGGTGACATCACAATCAGACAACAGTGTTAGGTATGTCTATGGGAACATCTTTGCACTAG
TTAGATTAGGTACTTATGTAACAGTGTGGTACTGTTATACTGAGAGCGCACCAGATTTCATATCT
GTGGACCCGCACTATCTTGATATAGAATTGATTATTGATTTATTCAAAGTTCGTAAATTATTCGT
ATGGATTCCATACGAGGAAGTGATTAGTACATCAATCTTAGAAGCTTATGATGCGGTTGTGGAAA
GGACGGCTTTAACGGATTGCTTGGATAGAAAGTTGAGAGAAGAGGAATTGTCGGATAAATTCGAA
TTCTGGGGGAAATGCTCTGATGGTGATCATACCATAGATTCTGTAGAGGAGAATGCCACTATAGA
ATATGCTAGCAGTAAAGAAGGTAGTGCCTGTAAAGAGGGGGTGGA
Right flanking sequence: Indices 238429 -- 238928
TAGTGACGATAGTGACAATCCTAGATACCTGGCATTCGGTGTGGTTGTCCTTGTAGGTGTGTTAT
TATACGTCTGGTATTGTTCTAGGTAATTCTATATTTATTGTGAAAACCAGAAATAAGAGTTTCAG
TTCATACTTGGCGGTAAAGGGATAACCTTTTTGTCTTGAGTGGAAATAGAATTCCTTTTGCAAAG
CTAGCTCTTATGGCGCATTGGTGCACAATCGTGCACTGCTTCTTCCTCATAAAAGAACCCGGCTT
TCCTTCCTATATGTTTAGGAGAAAAACCTTATCCATTAAGAGATGGAACTTCAAGAGCTGCTAGG
TCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACCTCCATACCAAGATTAGCACGGTTGAT
GATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAAC
CATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGATCC
Found at i:239789 original size:20 final size:20
Alignment explanation
Indices: 239764--239801 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
239754 GTCTCCCCCT
239764 CTTAGAGGCTTTCCTCTTAG
1 CTTAGAGGCTTTCCTCTTAG
239784 CTTAGAGGCTTTCCTCTT
1 CTTAGAGGCTTTCCTCTT
239802 TTTAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.42
Consensus pattern (20 bp):
CTTAGAGGCTTTCCTCTTAG
Left flanking sequence: Indices 239264 -- 239763
ATCAAAGGCATTCCCTGGTTTACTAACCCTTATAGAGTACATGAGCCAAAGCACAATCCATCCCT
TCCAATCAGACAAGAAGGAATCCGATGTATTGATCTTCGTCTGTACTGTGCTGTACAAGACAATT
ACCAAAGATCACAACTAATGATCTGTTTGACACAAGACATGACATGACCTGGCGGATCATATACA
GAAATGGGTTTAGCCTTCTCCTTGGCTTGACTCTTGTAAGTGAAAGGTTGGATCATATCTGGTTT
CCGGGAAGGTGCCTCGCTATTCCTCTGTTTTGTAGCTGACTAGTAAAGGTGGCCTAGCCTGCACA
GGTTCGTTGGTTTCAGCTTCTGCTTTACTTGAGTGGTTTCGGGCTCTGTTTGGTATTAGCTTGAG
AAGCGGTTGTAATTGTTCATTCATATCTTGTTTCAGCAATGGTCTATACTATAGAGCTCGGGAAT
GCATTCCATGCCTATTCTTCAATATGAGAAGGGGTGTCTCCCCCT
Right flanking sequence: Indices 239802 -- 240301
TTTAGCAGCATCAGCTTTAATCTCCCGATTAGCAATCATGATTTCCGAATTAGAAAATTCATTTC
GGAGATCTTCATTCTCCTCTAACAAATTCATAATTATCCGATAGGAGGTCGGATTGATACTTTTC
ACATCAAAGTCACCTATATGGCAGGGCTTAGTATCAACCCATACTCCATTTTTGTCGAACACATA
CTCCCTCTTTTTACTTTCTAACCCCATGGTATACTTACACATTTTCTCTTGAACCAACAGTTCAC
GGAAGTTTCTACTGAACTTTCGGACATATGAAATCACTTTTTTAGCCCTAGGGTCAGCTAGCTGG
TTGATGAACCATTCTTCATCAGCCTCATCTTTACCCGCTCCTTTAAACTTTATTATGGGTTGGTC
CACACTAGATGCCTTAAGCATATAGGACTTAGGTGCTAAAAAGATGCCATATTCGACAAAGTGCT
CATGCTTAAACTTACCCAAAGCGGTAGGTGATACCTCTTCTTCAG
Found at i:249030 original size:5 final size:5
Alignment explanation
Indices: 249020--249051 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
249010 GAGAATTCCA
249020 TACTT TACTT TACTT TACTT TACTT TACTT TA
1 TACTT TACTT TACTT TACTT TACTT TACTT TA
249052 ACAAACAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (5 bp):
TACTT
Left flanking sequence: Indices 248520 -- 249019
TTCTCGTTGACCACGGCCTATAGGAACCAGGCTATCCACTGCTTTTAAGCCTGTTTGCATAGGTT
CGTGGACAGATTTACGTTCAATAATCCCTGGGGCTTTCACTTCGACACGTCTTCGTTCGTGATCG
CTTAGAGCCCCTTTTCCATCAATAGGTACTCCCAAGGCGTCGACCACACGGCCTAACATGGCCTT
TCCCGCAGGAACATCCACAATAGATCCAGTGCGCTTGACAAGATCTCCTTCTTTAATAGCGGTAT
CACTACCAAAGACAACAATACCTACATTCTCATTCTCAAGATTCAAGGCTATTCCTTTCACACCG
CTGGCAAATTCCACCATTTCTCCTGCTTGAATCTCGTTCAATCCGTAAACTCGTGCAATCCCATC
TCCAACTGAGACCACTCGACCGATCTCATCCACTTTCAAATTCGTGTAAAAGTTGATCATTCTAC
TTTCTAATAGAGTCGTGAGTTCCGCAGCTCTTGGTGAGAATTCCA
Right flanking sequence: Indices 249052 -- 249551
ACAAACAAAGACGATGGGATGGATAAATCCGCTTTTCAAAAAGAAAAACCTCGATCTTCAAGGTG
CTGGAGGGAAGCATACCTACTACCAGCTTAGTTCAGAGTTGCCTCAGCGCGCTCGAGTAATAACT
GGGAAAATCAAGGCAGTCTTGAATTAATTAGAAGAGCTTTCTCATCAAAGATAAAATAAACTATA
TATGAGAAGAGAAGGCTGTGCTTATTTGATTCCCTCCTATTCTTTGATACCGCTTCTCACATAGC
GGCGCCTAAGTAGTCACCATTGCCATTGGAGCTTCCTTGCTTGCATTCTCATTTCAGAGTTTGGG
ACTACCACTAGAACTCTGTGCGCCAGATCAATATTCAAGTCTGAAAAAAACACAACTCGAAATGC
TATTGCCAATCGAGACACCTGCCTTTTATTCATTCATCGACCACATATCCTCCAAGGCAGAGAAG
TAGGACACATGGAATCTCAGATCCTGGCCTATGAACACATTCCCA
Found at i:249573 original size:5 final size:5
Alignment explanation
Indices: 249563--249617 Score: 94
Period size: 5 Copynumber: 11.2 Consensus size: 5
249553 AGACTAATAA
249563 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATA-T ATAGT ATAGT ATAGT
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT
*
249612 ACAGT A
1 ATAGT A
249618 CGCTTGATGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
4 4 0.08
5 44 0.92
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 249063 -- 249562
CGATGGGATGGATAAATCCGCTTTTCAAAAAGAAAAACCTCGATCTTCAAGGTGCTGGAGGGAAG
CATACCTACTACCAGCTTAGTTCAGAGTTGCCTCAGCGCGCTCGAGTAATAACTGGGAAAATCAA
GGCAGTCTTGAATTAATTAGAAGAGCTTTCTCATCAAAGATAAAATAAACTATATATGAGAAGAG
AAGGCTGTGCTTATTTGATTCCCTCCTATTCTTTGATACCGCTTCTCACATAGCGGCGCCTAAGT
AGTCACCATTGCCATTGGAGCTTCCTTGCTTGCATTCTCATTTCAGAGTTTGGGACTACCACTAG
AACTCTGTGCGCCAGATCAATATTCAAGTCTGAAAAAAACACAACTCGAAATGCTATTGCCAATC
GAGACACCTGCCTTTTATTCATTCATCGACCACATATCCTCCAAGGCAGAGAAGTAGGACACATG
GAATCTCAGATCCTGGCCTATGAACACATTCCCAGAGACTAATAA
Right flanking sequence: Indices 249618 -- 250117
CGCTTGATGGATCGCATGGACTTGAAGCTGTTTTGGCTGGGACTCCTATTGCTAGTGCGGTTGAA
GGCGTTGTTGATGGTAAGGTGATTGGTGATATGAAGACGGATTGCCCGAAACAGAATAAGGGTGA
AAGAATGGCGGATAAGGGTAAATCTATTGATGAGAAAACTGCCTCTGAACAGTATGCGATTGGGA
GCGGTCTATTAACATGGCTGCACAACAATCAATTGATTGAGATCCACAATCCTCTTGTAGAGGTC
GATCTCTCCGAGCATAAAGGTAAAGGATAAAAGTATAAGCCAGTAAACTATGTTAGGTGTCTATT
TGACATAAAGGATCTACCGCTCTTTACAGAACTTCCTATGGTGTCCCCTCCGCGAGATTGGAAGA
ATCGCAGAGCATCAAAATGGGTGAAGGCCTCTGACATGAATCGTCTCACACACAAAGCACGTGAT
CTATCAGGCGGTTACTTAAATTCTGAGGGAGCGGTTTCTAGGAAG
Found at i:258815 original size:18 final size:19
Alignment explanation
Indices: 258782--258818 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
258772 TTTTAGATAG
258782 TGAATTGACGCGCTAGAGAC
1 TGAATTGAC-CGCTAGAGAC
258802 TGAATTGA-CGCTAGAGA
1 TGAATTGACCGCTAGAGA
258819 TCTATTGCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (19 bp):
TGAATTGACCGCTAGAGAC
Left flanking sequence: Indices 258282 -- 258781
CGGATCTGATCTGTTGGAACGCTGGCAGTTCTTTTCACCGTTCTGCATCTACAGTTGGTGACATA
TTCGCAAGCTTCCTTGCATTTTCACCCACAGGATGGGCCATTCTGCAGGTACGTCCATCAGCATT
GCCCGTCTAATTTCATTTCTCAAGCCCCTAAATGTCATCTGCTAGGCCTAGTATCAAGCCATAAA
AATTGTCAGATGAAAATGCTTTTGAACTATTGGCCCACCTGGAATGTACCTCTGCAAGTATTCAA
TGTCTGCTGTAAAAACTTTTAGATTGCTATATAAAACATTTCACAGGCTCCAATCCATTTGTGAT
CTTTACTACAGATATCGCAAGCAAGTAGGTGGTCAAGGCATTTGGGCAGTGGGCTAGGTAACTAG
ATAGTACAATCTACAGGACAAGCCCCGTTTCTTAAGACGAATATCGTCTATTTCTCACTTCCCTA
TGAGTGCGATGGGCCCTAAATCTTTCGAAATGAAGTTTTAGATAG
Right flanking sequence: Indices 258819 -- 259318
TCTATTGCCGCAAGGCCGAGGGTCAATTAGTGCCAGGAATCGAGCAGATGAAGATCATCATGATA
CGTGTTTCTTGACTCTAGAAAAGCAGCAAGAAATGTGTAATAGTCCGTGTCCGGAAAGTGGCAGG
CAGTGGTGAACAATAAGTTGGCACGGGGTAGAGAAAGAAGACGGGATGCACAAACGATTGCTCAG
CTGGCTTGTATGCTTTCGCTATTTTGCTTCGCGCCTTTTCTTCTTTCCCGAGTAGATTAATAGAA
AGGAGAGTCTTCGTAGCCTAGCGATAAGATTGAGCCAATGCCTAACCCTTGACCCTCCTATCAAA
TTAATTGTCTTGAAAAGCGCCTAGCCTAAGCTTGTGTAGAGCCAGAAAGACGAGAAGGGAGAAAA
CAATAATAAAGGACAGGAGTGAAGCTACCCGTCGCTTCTTGCATGCGCGTGCGTGTCTTTCTTTT
TGTGTAGAGCCAGATCAAGCTGATATGAATGTTCGAACGAGTAAC
Found at i:278526 original size:22 final size:22
Alignment explanation
Indices: 278501--278544 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
278491 CTTACTCGGC
278501 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
278523 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
278545 GCTGATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (22 bp):
ATCTACTGAACATCACTTCTAT
Left flanking sequence: Indices 278001 -- 278500
ATAATCAAATAGCGAAGGCCAAATAGAGAGTAAAGGAAAACAATGTGCTAACAGAAGCACAGGGA
AAAGCATTCACAGATAGCCCAGAACATAGGCATTGAGTCTAGTAAATAAAGTAGTGGAAACGGGC
TAGCCAAAAGAAGGTACTAGTAAAGATCAGTCACACGGGATTCGTTTTTCATAGACGAATAGGCT
TTCGAGAGCAAAGGCCTTCCTTGGGCAAACAAACTAGTTTCTCAATCAATGCTTATTCGCTTATT
TGTCACAATAACATACAACACGTTAACCGAGTACTAATAACGTAATTCCGTATCCTTGTTGTTCA
AGGAATAAAAGGAAGAAGATCTTAAACAAAATCCACAACTAAAGATAGTACTACTAGGCAGACAG
GGACCCGCCTGACTATTTCGTTTTCTTCACAGAAAAGATGGGATAAGCTTTTGAATTCAAGCGCA
GGGAGAACTACCAACAAGCACTTCAGAAACTCCAACTTACTCGGC
Right flanking sequence: Indices 278545 -- 279044
GCTGATCTTTCCTCTCTACCTATACAACTGAAGTTTCCAGCTTTCCAGCAAGGTATTGGGATAGT
TCACTCAGATTTTGAGATGGTTTTTGGGCAAGTGTTTAAAGACGGAACCTGGCCCAGTGTGACTT
CAGGTAAAGTATGGCTGCCTTGTAGGATAGGACAGGAGTTTACTTAGCTGCATGCATTCATTGCA
GACCTGGCTGCAAGCATCCATAGATAGCTGCCGAAGGTACTTGTCTTATCACTCTTTGGCAATCG
AATTGACAGTGCATGTGTGGAAAAGAGAGCTAGTGGATTCCTTCTCGTTGTTTAGTCTGGAAATA
CACCAATAGCAACACAGAATGCTATTACGATACCTAAACTAACCCCTACTCTCCATTTTCTGTCT
ATATTATCCATAGGTATTTGTATTGCTGGTTCCTCTGGTGGTATGACCTCTTTCAACATAGCCAT
ATTGTTAAAACTATTCTCATCAAAGGTAAAAGGAGTATCTCCCCG
Found at i:279654 original size:15 final size:15
Alignment explanation
Indices: 279634--279667 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
279624 ATATACGGGC
*
279634 CATTAGAGAAAATCT
1 CATTAGAGAAAATAT
*
279649 CATTAGAGATAATAT
1 CATTAGAGAAAATAT
279664 CATT
1 CATT
279668 TGATCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (15 bp):
CATTAGAGAAAATAT
Left flanking sequence: Indices 279134 -- 279633
AATCCCACGACATATAAAGCAGTTGATCTGGTTGAATATCTATATTACAAGGTATAAACTTGTAC
CAAACTGTAGTGTAAAAACCAACTCTGACAAGTGCGAAAATACTACCACAGTATTGATTCCTCCA
TCCATAGATGATATAGTTGTCATTTTTATCAAACAATTGGTTAAATTATTGGATATGAAAAAATA
TTTCTTTGATAATGCACTTTTATAGGCTGGCCATAACACTGTTTCTAACCACTTATTACCATCAT
CTATCCCGGGTGTAAATTGTTTTAAAGATAGCAAATCTTTCCAAGAATCAAACTTCCATTTATTT
AATGTTGCGTTAAAACTGACAATAGGAGATGTCCAAAGATAATTTGCACCCTTTAATATAGGATC
ATAAACTTCATATGATATTTGATGAATGAAATCTTTATTAGTTAATGAATCCATATATAACTTAC
TATGATATGCTAGTTGATCATTTAACGATTTGAATATATACGGGC
Right flanking sequence: Indices 279668 -- 280167
TGATCTATTAGAAATACTATTATTAGATAATAACTTCTTATATAAACCCACTACTTTCCACAATA
ATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGGTACTTGGAATATATTAGAT
ACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAATCCCTCATACGGTTGAAATC
GGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTGGTGGGGATTTCCATTTTTT
AGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGAGCTATTTTATCCCTAGTAT
ACTTTGTACGTACGGCTAGAGATTAAGGCAATCAACTTAGTATGTTCCCTGTCGGTACCTGTTAT
TTGTAATGATCCCTTGGGTGTGCTCTATCACGACTTGTGTGATAGTATGGGTGGGGGAACAATAA
ACATTATCCGACACCCTGGAAGATATGTGTTTAATATGCTCAAGA
Found at i:280216 original size:41 final size:41
Alignment explanation
Indices: 280171--280251 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
280161 CTCAAGAAGT
*
280171 TTGTCGATATTTAATATATTTAAAGAGTGTTGGTATACTTG
1 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTTG
280212 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTT
1 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTT
280252 TACCAATTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.46
Consensus pattern (41 bp):
TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTTG
Left flanking sequence: Indices 279671 -- 280170
TCTATTAGAAATACTATTATTAGATAATAACTTCTTATATAAACCCACTACTTTCCACAATAATG
TTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGGTACTTGGAATATATTAGATACA
CCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAATCCCTCATACGGTTGAAATCGGT
TGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTGGTGGGGATTTCCATTTTTTAGA
GTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGAGCTATTTTATCCCTAGTATACT
TTGTACGTACGGCTAGAGATTAAGGCAATCAACTTAGTATGTTCCCTGTCGGTACCTGTTATTTG
TAATGATCCCTTGGGTGTGCTCTATCACGACTTGTGTGATAGTATGGGTGGGGGAACAATAAACA
TTATCCGACACCCTGGAAGATATGTGTTTAATATGCTCAAGAAGT
Right flanking sequence: Indices 280252 -- 280751
TACCAATTTGAAACTTGTCATAAATAAGGTTATTACCCGCCTACCTTTACTTTATTTGATTATTT
GAATCCTTTCGATGCAGGAACCATAGCTCAGACTGATGATCCCTCTCTCTCCTTAGGTCACCCAA
GGTAGAAAAAATGCCCCAAAGCCGAGAGTTCGATCCAAGTACTAACCCTCTAGTTGTGATTTCTA
AAGATTTCATTTCAACTTAGAGTAAAACATAATAGTTAACACTAAACCTAAGCAACTCTTACTTT
TCCATCAGCAACTACTTCCAATGGCTAAGAGTAAGCTCGTCCGGACCACTCCTATGGCCCTCTCG
GCTGGACCTACTCCCACCCTATCCGACTCCAATCCTTATCCAACTTCCACTCAATCATCTCCATA
AGAGTAGACTTAATAGCTATTGTTAGCCTCACTTTTGGAAAACTCACAGGATTGCTAGCTTTTCA
TAGAACCTGTTATCAAAACTTTCAAACTTCTGCTTTCAATATGGA
Found at i:292546 original size:5 final size:5
Alignment explanation
Indices: 292536--292561 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
292526 GGACTACTAC
292536 TGGGA TGGGA TGGGA TGGGA TGGGA T
1 TGGGA TGGGA TGGGA TGGGA TGGGA T
292562 TATTCTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.58, T:0.23
Consensus pattern (5 bp):
TGGGA
Left flanking sequence: Indices 292036 -- 292535
TTTATGTAAAGTAAATATTCTACATCTGACTTGATACAAACCTGCACCACCAGCTTCTTCCTTTA
TACCAGTTCGAGGCGAGGATTGATTGCTTGATCTCAAAAACTCCTAGTTAATGTGCATCAACATT
GGAGTCGGTAGCTTCGTCTTCTGCCTCAGGTTTAAAATCACTTATTCCTAGCCGCCTATCCATGC
GCCGCAATAGAGGAAAGAGCAGCAAAGAAATCAAAAGCGTGAAAATGTCTCGATATCGATATGTT
AGATGGAGCTCAATCAATAGGTGCCGGATTTCTTATTTCTCAGAGCTGAGGTCAACCTTGCCAAC
TCTAGTTCTTCCTCGGCCAAGTAATGTAGATTTCCTTGGGAATTCTAGTGATCTCTTTCTTCTTC
AGCTACTGCTACGAACGTATTTCGTTTAGAACGAGTAACTACTCGAGGAACTAGGCCATGGTTTC
CGTTAGTCTAAGTAGATCAAATCTTGTTGGCAAGAGGACTACTAC
Right flanking sequence: Indices 292562 -- 293061
TATTCTATTACTAATTGATGACCTGGGGGGCTACTCTTCTTTCTCCACTACATATATTTTTTTAC
TGACCTGGATAGCGGGGGCAGTAAAGAGGAGAGGAGGAAAAAGAAGTAGAGTTAGGTTCTGTTCT
TGTGTGTAAGCCCTCGGTCGATTCGTCTGCTCATTCACAGCGTATGATTCTTATCCAATTGCTTC
TTCTGAGCGTCGGTTAATCTTTCTTATTCTCCCTTCGGGGCTCCTCATGTTGCTACTAATAGAAA
CAGTTCGGACCTTGCTCATACAATCCTCGGGACTACTATTGGTTAATCTTTGTCCTCCCTAGGGA
AAGACGATACTTTTTGGGAAAGACAGGGTTAGCGCTGCCTGGGTTGAGCCATTCCTAACAACTCA
TCCAGCTTGACTAGCTTGCATTAAGAGTAGTTCATTTCCTATAATATAAAGTGTAGCGAGTTTTC
TACCTTTTCACATAACCGAGAAAAAAGGCAAAGTTACCCTACTAC
Found at i:300312 original size:27 final size:28
Alignment explanation
Indices: 300279--300340 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
300269 GTTCTCTTTA
300279 TCTACATCCT-ATTCCGAAGCT-GAAGCT
1 TCTACATCCTGATTCCGAAGCTAG-AGCT
*
300306 TCTACAT-CTGATTCCGAAGCTAGCGCT
1 TCTACATCCTGATTCCGAAGCTAGAGCT
300333 TCTACATC
1 TCTACATC
300341 TTTTCAAGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 2 0.06
27 28 0.90
28 1 0.03
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31
Consensus pattern (28 bp):
TCTACATCCTGATTCCGAAGCTAGAGCT
Left flanking sequence: Indices 299779 -- 300278
CACTCCTGTGGAAAGGGCATGTCTTACTATAGATAGTAGGTCAGCTCAATCACTTTCATCAAATT
CCCTTGCTTAAGTACAAAAGCAAACTCCCCAGGTTCAAAAGCAACGGCCATGGGGTCACTATACT
CGTCAAGGTTGTCGGAGGTCTGTGAGTCATACGACTGTGGTACTGGCACTTTTCAAACTGAGACT
CACTAAATATTACGCTTCTGCTCGCAAAGTAGGCCAGCCAATAAAACCCATCTCGTAGGACTCGC
TTAGCTAAGGTTCTGGCTCCTTGATGGCTGCCACAAATCCCTTCGTGAATCTCATTTTCATTCAT
ATTTTGCAAATACTTCATTCGACTTTCTACTTTCAAAGAAAGCAATTAGCTCAGTTCATTAATTC
GCCTGTTGGTGTCTAATGACTTGGTATAGGCTGTCCTTCGATTGGATTCCGATCAAGCGACCCCT
TTTTCTTTCTAACTGATCATATTTCTAGTTATTCCGTTCTCTTTA
Right flanking sequence: Indices 300341 -- 300840
TTTTCAAGCTGTTGGGGCAAGTGCTTTTTCTAGGTCTGTTGCTTTTGAATTGTTTGTTTACGCCA
AAACATATGAAAAAAACGCCTTCTATTGTGAAGCTGCGGTTCTCATATTCGTTTTGTGCTCCGTC
TGCTTTGATTTGACCGGCGAGGGAGCAGTTAAGTTAAGGCGGGATCGCGGTGCTTCGAGCCTGCG
TGATCGCTGGATCGGGTCCCTTCCCCGTTTGCAGGAAGTTTGCTTGTCTTACCGAAAGTAGAACG
GAGCCGCTTTGGCGGAACAGAAAGAGTGATTCTCTTTTCTGAGAAATACAAGCTGATACCGGCCG
GATCCCTGCTTGTGCGTGTTTGGGGCGGCGGCACAGGCGGGTTGCATCCATTTAGGTAGGGAACT
CTTCATTCGCCCATTCCAACCAGAAAAAGCTTTGCCACTACCTTGCCTCGCAGTAAAGGGAGGGA
GTATAAAAGAAAGGTGATTCCTCATTCCTTTCCTTGAGCATTGAT
Found at i:316588 original size:20 final size:20
Alignment explanation
Indices: 316560--316598 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
316550 TCTGGGGATA
316560 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
316580 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
316599 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 316060 -- 316559
TTGCCCTCCGGGGCCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTCCG
CTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATA
ACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGGTA
GTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGATC
AACGTACAAGGTTTGCCTTCTTGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCAAAAGGAG
TCTTTGAGAAGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 316599 -- 317098
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTG
TTCAGTTCACGTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGG
TTTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACG
GGTAGCCAAGAGAGACGTATTTAAGACTTTGAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTA
TAGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATA
GCGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCA
Found at i:329948 original size:14 final size:14
Alignment explanation
Indices: 329929--329956 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
329919 TCCTCTCTTA
329929 CGAGATTTCTAGTT
1 CGAGATTTCTAGTT
329943 CGAGATTTCTAGTT
1 CGAGATTTCTAGTT
329957 TCCTGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
CGAGATTTCTAGTT
Left flanking sequence: Indices 329429 -- 329928
TAGAGTGGCGGGTACTTCTGGGTCGTATTCTCGCTCAGGGAAAGCTACACTATAGGAAGTCAGGA
AGTCAAACAACGGAAGCAGGTCTGGCGTATCGGATCAATCTGCGACTGGCCTTTTATTCATAACA
TTAGTAGTTACTCATTGGGTGCCATCAGATGAACGAACTAGTTTTCCACAGAAGAGGATTTGAGG
TAGGGCTGCTAGAGAAACTGACAAGGAAATCACAAGAAATAGAGATGCTTCACGCCCAGCCAATC
TTGAAAGCTTGTACAGAGATCCAGAATTGCATCTTCAGAAGAATAATAAGCTAAGCGTCGAATCT
GGACTGGAAAGTCTCTAGAAGGATTTGCACTCCTACACTGCCTTATCAACGGATTCCTGAGAGAA
GGGGCCGGGCTATTCATTCCTTCGAGGTGCCGCAGTAAAGGTAGACTAGCTTATTGGGCAAAAAG
GTGCCGTACTTCTCAATTGTGAGACTAGAGCTTGATCCTCTCTTA
Right flanking sequence: Indices 329957 -- 330456
TCCTGAAAAGAAAGCGAAGAAAGAGTTCTGTATTGAAGATGTCAACTGCCAACTGCGTGCTTTCC
CCAATTCTTCTCTTACGAAATGGATCGTTGATTCCTACCACTGATGGATTTATGCCGACCTTAAA
AGGAGAAGGAACGGGGCTTCCAGAGTCTGAAATGCAACTTCCAATTGACATAGAATAGAATGATC
CAACGAACCCATACTCGTACTCGGGAAGGCCAGCTGGAAATGCAGTAAAGTAAGTAATTCAGTAA
GTAATGCACTCAGTGCCAGTGCCGGTTAAGGGTCTATTGCCAGTGCTAGCGGGAGTTGGGTATGG
CTCCTGAAAATCTTGTACTGCTACGATTTGTCCTTCGTGTGGACGGTGAGATCGGGAATCTCCTC
TGTAGCATTTTTGCATCTCGTTAAGAAAACGATCAAAGTTACAGCGCCCAGTTTGAGTCATTTTT
ACATTGAATATGTTTTTTTTTCTCTTCCCTGGCGGATTTTTTCTG
Found at i:333228 original size:21 final size:21
Alignment explanation
Indices: 333204--333247 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
333194 ATAGTACTAC
333204 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
333225 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
333246 TA
1 TA
333248 TATAGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.34
Consensus pattern (21 bp):
TAACTAATACTAATATATAGA
Left flanking sequence: Indices 332704 -- 333203
CCAAAGATCTTACCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCAATTTCCATTCAAGAGTT
TCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTA
GGAACACATACAAGAAAAAGGATAATGGTAGCCCCCCCATTAACTAATTTATGAATTTCATAGTA
ATAGAAATCCATGTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAG
ATTGACCTCTGTAGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCC
AGAATCCATGTTCCATATTTGAAGCGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTC
CTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGGTGCCGACAGTTCATCACGGAAGA
AAGAACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTAC
Right flanking sequence: Indices 333248 -- 333747
TATAGAAATAGATATCTAGAAATAGAAACGAACTAATATATAGATAATCGAAATCGAAAAGAACT
GTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATA
TAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAA
GCCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCC
GTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATAATATCG
ATTCATACAGAGGATAAAGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGA
AGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCAAAAAAAATAAGTCGAAGATAGAAGA
GCCCAGATTCAAAATGAAGAAATGGAAACTCGAAAAGGATCCTTC
Found at i:333260 original size:14 final size:14
Alignment explanation
Indices: 333241--333273 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
333231 ATACTAATAT
333241 ATAGATATATAGAA
1 ATAGATATATAGAA
*
333255 ATAGATATCTAGAA
1 ATAGATATATAGAA
333269 ATAGA
1 ATAGA
333274 AACGAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.03, G:0.15, T:0.27
Consensus pattern (14 bp):
ATAGATATATAGAA
Left flanking sequence: Indices 332741 -- 333240
ATTTCTTTTCAATTTCCATTCAAGAGTTTCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAA
ACATGAAATGGACAAATTCCTTCTCTTAGGAACACATACAAGAAAAAGGATAATGGTAGCCCCCC
CATTAACTAATTTATGAATTTCATAGTAATAGAAATCCATGTCCTACCGAGACAGAATTTCGAAC
TTGCTATCCTCTTGCCTAATAGGCAAAGATTGACCTCTGTAGAAAGACTGATTCATTCGGATCGA
TATGAGGACCCAACTCCGTTGCATTGCCAGAATCCATGTTCCATATTTGAAGCGGGTTGACCTCT
GTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGAAAA
AATGGTGCCGACAGTTCATCACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGAAT
AGTACTACTAACTAATACTAATATATAGATAACTAATACTAATAT
Right flanking sequence: Indices 333274 -- 333773
AACGAACTAATATATAGATAATCGAAATCGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTC
TATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGG
TCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTT
GAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATT
TTTCTTGGGAAGTTTCGGGAAGAAATTGGAATAATATCGATTCATACAGAGGATAAAGTTCTCTA
TTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAAATAAA
TAAAGAATAAAGCAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCAAAATGAAGAAATGGA
AACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGG
Found at i:350171 original size:6 final size:6
Alignment explanation
Indices: 350155--350183 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
350145 CTCTTTGCCC
350155 CTTAA- CTTAAT CTTAAT CTTAAT CTTAAT
1 CTTAAT CTTAAT CTTAAT CTTAAT CTTAAT
350184 AAAGTAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (6 bp):
CTTAAT
Left flanking sequence: Indices 349655 -- 350154
CCCATTACTGACAAGAAAGACACCAAATTCACCTTTAGGTGCTTCAACTGCGGTATAGGTAGAAG
GAGCTGGTACGGAAAAACCTTCTGTATAAAGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGAT
GATCCGGTAGTCATTTGGCCGGCTATGGAAAGAAAAAGCTTGCATCTGCTCCCCCTAAACTATAA
CAGGTCCCATCTCTCTCCAAACCTAACGTGGTAGTTTCCCATCATAAGGCTTTCCATCTATAGAT
TGATTGAGCCATTACCCACTAAGGATCCCATTCGTTCAGAACTCAGTTGACTGCTTCTATAGATA
AGGCGGAACGTCCTTAGTTCAGCATTATAGCACATAGTCTCCGACGCTACTACAGCGCTTCGCTA
ACTCGAAGCGCCTCGCTATGAGAATGACGCTTCGCTAACGCTCGGCTAAGTCGTCGAACCCTCGC
GCTGACCATTCGCTTTCTCAGTAGCGAAAGCGCTTCTCTTTGCCC
Right flanking sequence: Indices 350184 -- 350683
AAAGTAAGTATTTGGAAAAGAAAGAGATTCTTGGTTTTATTGCTCCCGCTTCCTCATCTGCGCTC
GTCAAGCCAACTTTGCTTTTTGGGAGGTGAAAGAGGAAGCGGACATTTCGAAATGACAGCATCGA
AGATATCTATATACACAGGAACGCTTATTCCGGACTGCGTTCCGGAAAAAGTAGCCTACTTGACA
GAAAGGGCGGGCACTCTCGGCTCGGGGGTAGGCACTCTCGTCTTTCAACCCCACCGTCACTTTGA
ATTTAGTGGGGCACTGTTTACTTTACTTACAGCCTCTACGAGTTGCAAGTGAATGGGGCCGGTGC
GTGTGAACGGAAGGGTTCATCAAGCCATTTTAACCCCTAAACAAAATAGGAAGAGGGGTACTTGA
CTAATAGGGGGCAATTGCATCGCACCTGACTGTGAGGGACCTCTTGATACCTTATGTTCACTTCC
TAACTAGTAGCCGGTTTCCTGTCGCGGAAGCCTTTTCCCAGTGCG
Found at i:355540 original size:11 final size:11
Alignment explanation
Indices: 355524--355551 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
355514 GTCGTCATGG
355524 GAAAGAAATAA
1 GAAAGAAATAA
355535 GAAAGAAATAA
1 GAAAGAAATAA
355546 GAAAGA
1 GAAAGA
355552 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 355024 -- 355523
TGTTAGGCGCTATGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTC
CACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGA
CGGGCACTCCAGGACCCGCCTACGCTCGCCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGA
GGCCACCTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGAGCGGTTCGCTTGAGT
TGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 355552 -- 356051
GATTATTCCCCTAGAGCTTGTCCAGTACCACCTGTACTAAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGA
AGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCTACATT
CGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGTC
GATAAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTCAAAAAGGGATATATGAAGTT
CAAGGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAA
CAAACTCTTTCCTGCTTGCTCCCTCGACCTTAATTTAATTCACTC
Found at i:374770 original size:23 final size:23
Alignment explanation
Indices: 374736--374783 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
374726 GAGCATACTA
*
374736 TAGACTCCGCGAATACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
*
374759 TAGACTCAGCGATTACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
374782 TA
1 TA
374784 TTTGTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TAGACTCAGCGAATACAAGTCAG
Left flanking sequence: Indices 374236 -- 374735
TCCTACGCACGATTTGGAGTTGTCTGCTCTAATATTCGCACTGAAGATCTGTTTACATTAGGGTG
CCGACTTTTCAAAGATAATCACCAGACAATAAAAGAAAAATGCATCAGGAATGAAATCTGACACA
GCGTGGCTGGAACTAATTAAACATTACGATCTCGTCAAGGATTATGCAGCTAAGGAGTGGTGGCT
GAGGCAGTGGAAAGAGAAAAGCCAATATGGCGTGGTGACGAGTGAGGTGCAACTCTTGAAATAGA
TGCAGCAGATTTGTGCCTTGGTAAGAAGAATTAGTGGACAAACTGACAACGAGAGAGGGGGGACC
GAGCCAACGAGGAAGAGCACTGTTCTTATGCTAAAATCCATTATGGTACATACACCGGGGCAGGA
TACCCGATAGGCAGGCATAGGCAAGGTGGAAGAGATCAAATAAGACATTGAGAAAAGGATGCAAA
AAAGAAAAGAACGAAGTTGCAAGAAAGAGAGAAAAGAGCATACTA
Right flanking sequence: Indices 374784 -- 375283
TTTGTCTCACCGTACGTCTTCTTCACCCCGACTTGCTTCTTTCTGCTCTTTTCATTCAAATAAGC
TCTTCCCACAACCTTTCATTGCCATTTGTCTTCGAATCCTCTTCGGCAACGCTGGGCCGGTCGAA
GGGCGCTTCCAGCTCGTTAAAGCAACCACAGGAGAAGAACCACAAGGAACGGCACTACAGGTATG
GTACGAACCATGCTCTAAGATTGATAAACTACATCATCCAAGACTTCAATACGAATCCATAGGTG
AGGAGAGCAAGCCAATGAAGTCAGCCCATTAGCTAGATTGGCAATAAGCATTACAGGAGTCAGTC
TGTCCAGTATGTAAGCCATGAGTCTACTACTTAAGCCTATGCAGTCTGTCCAGTATGCCAAGTAT
GCCTCATGCTGTAGTATGTCCGATATGTCATGTAAGCCATGGAGTGTATGGACTAAGTAAAAGCA
ATGGGCTAGGATTGGGACTGCCTACCTTCTACAACCATTCCTACA
Found at i:389821 original size:23 final size:22
Alignment explanation
Indices: 389772--389823 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
389762 ACTTTAGCTT
*
389772 TAGAATGAGGAACGTATCGTATA
1 TAGAATGAGGAACGTA-CGAATA
389795 TAGAATGAGGAACGTA-GAATTA
1 TAGAATGAGGAACGTACGAA-TA
389817 CTAGAAT
1 -TAGAAT
389824 AGAAAGGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 2 0.08
23 22 0.85
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGAATGAGGAACGTACGAATA
Left flanking sequence: Indices 389272 -- 389771
CTATATTCCTCCAAGAGGGAGGGGAAGAGCCCGAGTCAAAGTTCTTTGTTGACCAATCAAAGAGA
ATGAAAGAAATATAGAAAGAATGGATTAGTGTCAACTCCATGAATCGGTACAGGTAGAAGTAGAG
GGGGCATGCCAAAAAGAATTTGAGAAGCCTCGTTTCTGAGCTTTTACAGCATCTTTTGATTCAGA
AGCATCTCCCACGAAATCACATAACATAAGTGATCCTGCGGAACCGGCTTTCCTACACTCACTGA
TCCATTCAAAGGATTTTATTTTCTCACGACTGATCCGCACTTCAGCTCCGATATTAATAAGCACT
GCCTTCTAGCCAGTCTAGTCCCGGAGACATTATACTCTGGGTCTGGCATCGCCTCGCAAGATCAT
CTAGTCTAGATTTACTCGGGTGTGCCCGATTTCCATGATCCCTATTTCATAGCTTGGCTTGGGTT
GAAGGTGAAGTCTTTATATTCTAGTTAGAGTCACTACTTTAGCTT
Right flanking sequence: Indices 389824 -- 390323
AGAAAGGCGAATAGAAAGACTAGTTACTCGCTCTAAAGTATTATACGTGAACTATTCTCACAGAG
GAATGAAGGGAGCTGGAACCAGGCTGCCCAGGAAGGATTTCTGAGCTCTACTCTAGTATTGACTG
GCTTTCAAGGAATGGAGCTGCCTATATAAATAGAAAAAGCTTTGCCCGCGAGAATTTCATTTCTT
TAAGTAAGCTGCTAGGTCTGTCTTATTTGATGAAAAGCAAGACAATCCACCATGGATCGGAGGGG
GCTATATACGAAACTGAGGAGCTCTTACCTCTATTTATGATAATAGAATAGCTTTGGGTGGCTTC
ACTTATCTGATAGCCAATGAGTCACTATTCCAATCACCGCCCCTCGTGCGCTCGTGCCCATCCAT
TAACGGAACGGACTTACCGTTACTAAGCTCGTAAAGAGGAGGGCTATCTTTCTTTGAGGTTGCGT
ATGATTCTTAATTTGAAATGAATGAATCTGTTCATAAGATTTGGA
Found at i:422682 original size:20 final size:20
Alignment explanation
Indices: 422654--422692 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
422644 TCTGGGGATA
422654 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
422674 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
422693 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 422154 -- 422653
TTGCCCTCCGGGGCCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTCCG
CTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATA
ACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGGTA
GTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGATC
AACGTACAAGGTTTGCCTTCTTGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCAAAAGGAG
TCTTTGAGAAGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 422693 -- 423192
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTG
TTCAGTTCACGTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGG
TTTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACG
GGTAGCCAAGAGAGACGTATTTAAGACTTTGAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTA
TAGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATA
GCGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCA
Found at i:456320 original size:6 final size:6
Alignment explanation
Indices: 456309--456452 Score: 288
Period size: 6 Copynumber: 24.0 Consensus size: 6
456299 AGCGGTGGGC
456309 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
1 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
456357 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
1 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
456405 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
1 TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT TCTTAT
456453 AGTAAACAAG
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 138 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
TCTTAT
Left flanking sequence: Indices 455809 -- 456308
CATAATAAACTGATGCATCCGAAGACGGTGAATCTAGAATAGAGGCCGGGTGGGGAAGCAAAAGA
TGCAAGAGAGCCTTTTTCCGGGATTGGATTTCACTCATTTAGTGCTTGGGATGCAGACAGGCGTG
GAAGATGAACATAAGAGAGCTCCGCCCTTGCCTTGCACCGGTGAACAAAAGAAAGAAAGGAGACA
AGGTCGGAACTAAGACGTCAATAGCTTATTTTAAGTGACGTATTCCGCGAGCAAGGATAAAATGA
GAGTATGAGCCCACACCCATATAGAAATCAGTCATATGCCTGATAGTCGTTATCTATTCTTTCTC
AATGATAGTATAGTATTATTACCCGAAAACAATATGTACAGAGGAAGCTAGTTCTGTACTCTAGT
TCAGTCCCCAAGGCGCGAGTGAAGCCCTTCTCCAGTATGGTAAAGTGAAACCGCTTCGGAGTTTA
TGGTTCGAAAGAAAGAGAGAGGAAAGCACTTCTAAAGCGGTGGGC
Right flanking sequence: Indices 456453 -- 456952
AGTAAACAAGAGTTCCGTTAAGCTCTGGGACTCTAGGCAAGATAGCTGTAGTTTTGAAAACGTAA
ATTGACCGAAGTTTGTCTTTACTTTCCCCTATTCTACGTATACCATCTCCGAGCCTCTCGTTAAA
TCGAATCAATTGATGAAAGATGCCCGTCCTTGCTAGGCCAGTTAGAAGTTCCTGGGGATGTGATT
GACCTAAGAAGCCCGTGTTATCGATAGATGTAAGTTCATAGTTGAAGACAAGGGAGTTTTAGCTT
TTTCGTAGATAGTCTGAGTTCGAGCTACTGTAGTCTCCCCCGTTGACCTTCTTTTTTAGATAGAA
TCCTCAATGAGTGGAAAGGACTCCCATCCCAGACTTGCTCCGCAGTACGAGCCCCATACAGAGCC
GCGCCCTTGTGATATGATAAGAAGAAAAGGGGCCAGGCCACCCTCTTTTCTTTTCCGCACCAAGC
CTTCTTGTAAAATAGGGTGTATAGCTCAGTTGGTAGAGCATTGGG
Found at i:464442 original size:5 final size:5
Alignment explanation
Indices: 464432--464492 Score: 122
Period size: 5 Copynumber: 12.2 Consensus size: 5
464422 ATGCTGGCAG
464432 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
464482 TACTA TACTA T
1 TACTA TACTA T
464493 GATTGCCTTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 56 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 463932 -- 464431
AGGTGTAATTGGGGATGAAATTAGAGAATCCGAATCGTAGTCCTCGTGGGAATGGTCGCAAAATG
CGAAGGAGGACGCCTTGTCGAAGCTGGGGATCTAGATAGGTACCGATCTCGGTGGGGATGACCCT
ATTGAATCTATTGAATTTGTTTCATTCCTTTCATGCGCAGATGAACCTTGTCTGCTTTGGAAGTA
CCTTTGCCCTGGAGTGGAGGATTGTCCCGTGATTGAGGGATGTCCTTTCTCCTCGGAAGTAGGGT
ATTCGTATTCGTATTCGTATTTTAGTAGAGGAGGCCTTGCCTACTGCTTTGTTACCAGAGCTGGA
TCGATTTCATCTTTTCCCAGTGCCCATGCTCCTACTACTACTTATGCAGCTATTCAACCTCCCAT
ACCATAGATGGTAATGGTGCTTCCCCAGCAGCTGTTCCTACTCCTTTGGCCCAAATCAGGTGACT
TTTAAGTTGAAGCTTGCCCGCAGAACGATGTAACCATGCTGGCAG
Right flanking sequence: Indices 464493 -- 464992
GATTGCCTTAGAGCGCAGATGTCTCTGTCCCTAGGAACGTGATGCTTAGGTGCGAGGTGAAACAC
AAGCAGGAGATCGAGAAGAAATCATACGGATTGCAACCTACAGATGAAGAATCTGCTTCATTGTT
CCCACCATCTATATCAGATGTTTAATAAGAATAGGAATCGAATAAGCTGCTGATTGACTGAGGAA
GCATTTGAAAAGAAAGGAAGGGTGATGCTTGTTAAACAAAGCTGCGTGTGGGGCCGCCACGTATA
GCTGTAGTTTCTGCTGTAGCATCGGTTATTTCCGTTATTGCTGTAGTAGCATCGGTTATTGCTCA
GGTTACGAATGACCCAATCTATCTATGGCAACCACCCCTACTTTTAGTAGATAGAGATGCGCACC
TAGAAAAGACGGATGAAAGAGAACCTGCCCTTCTGACTTCTTCTCTTGTCTGTCCTTTACGCAAA
GCGATCTATGGTCTCAACAAGCCCCGATAGCGTCGGTTTTTGAAG
Found at i:481091 original size:27 final size:27
Alignment explanation
Indices: 481053--481104 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
481043 CAAATAAGTG
*
481053 TATTCTTACTAGATGAGACATCTTCTC
1 TATTCTTACTAGAAGAGACATCTTCTC
481080 TATTCTTACTAGAAGAGACATCTTC
1 TATTCTTACTAGAAGAGACATCTTC
481105 AGAAGATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (27 bp):
TATTCTTACTAGAAGAGACATCTTCTC
Left flanking sequence: Indices 480553 -- 481052
ATCTCTTGATACCGAAATTCGCCTAAGGTCTGGCCTTCTACTCTACTTTGATTCAGATTCATTTG
TCGAGAGATAGTGGATAGAATGAATAGTAGAAGTTCCGCTGTAAGCAGTTACGAATGGGGAGGGT
ATCATTAAACCCAGTCTTCGCTTAAGACTTATCTAGTTTTGCTCCCTACTCTCAAGTAAGTAGAA
GGGGAAGGGACAAATACCTTTACTTGGTCTAACAGTCCAAGAGCTCTCACGGTAATTGGATAGCT
GGCTTGAACCAAGCCAAAAGGCGGCATCACCTTGAACCAATGAATTCTCAGATTACTGGCAGTAA
TTCGTTCATTTCAATGAAAGAGCAGGTAGCTATAAGTTTCCCCACTCTACTCTAATAGTCTTTTT
TAGATTCAAGCTTATTTCCTTGAGGATCGCAACCCGAATCTTAGGATAGTCTACTTTCTGTTCTG
ATAGTATAGGAATAGCAGTCACAGAGGGAGGATCACAAATAAGTG
Right flanking sequence: Indices 481105 -- 481604
AGAAGATTTCTTCCAAAAATGCAAAAGAATTTCTCTGTCTTCTTTCCAAAAAAAGTGAGGGGGCC
CACCACACCACTTCCCTCGACCCCTTACCACGGGAGTCACTAAAGATGAGACTGACCATGATAAG
GGTATGGGGCATTGATTGGCTTGGAGGATTAAGGGGAATCGGGTAGTGGAGCCAACATATTAGGT
CGGCCACTGAGATTTTGCCCCTTTTTCTCCACCTGCGCTGGAGGGATTGCAGCGGGATTCAGATG
CCGCTCTTGACTGAGCCCGGGTTTAGGGGCTACCTGGGTTTGTGCCCAACCTGGGGGCGCCAAGC
GCAATTCGAGATCGGGATAGAGGGTAAAAGCAATCCATCCTTATAGCAAGTCCTAGAGTTAAGTA
AAAAAGACTTCTCGGGAGTTTGGGAGTGTGACTATAACCAGTACTCATGTATAATATCCTCTTTC
TAGTTAAAATGAGTATTACCTGCCTGCACAATCAATCTATGGCGA
Found at i:482164 original size:23 final size:23
Alignment explanation
Indices: 482132--482177 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
482122 ACCCAATCAT
482132 GACTCATCATATTTATATATATA
1 GACTCATCATATTTATATATATA
*
482155 GACTCCTCATATTTATATATATA
1 GACTCATCATATTTATATATATA
482178 ATAGAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (23 bp):
GACTCATCATATTTATATATATA
Left flanking sequence: Indices 481632 -- 482131
GCTAAGCCTAAGTGTTAAGCATAGCATATCTTATATTAACCTATCTTAAAAGGACTTCCAGACAT
TGATTTTAGGAGAGTCATTTTGTAGGGCCATTCGCGAGCCAGTACCCTTATTAGGAAAGTAGGGA
CTTATTCGAAGTTCATAGATATAGTCTATCAGGCTGGTCTCCGGGGTCGTTTCCCTAGCAGAGCA
GGTTGGTTTCCGGTTCCCTACAAGCGTTCTATATAAGCGGTCCCTGCCAGTTACATCAAGTTCCA
TTCCAGCAATCAATTAGGCTAGTATTGATAGTTCAAGCTAAAAATTCTGTCTTAAAAAAAATAAT
AGGTTAGCGGGACAAGGAAGAAAGTGCGATTGTATTAGTGTTCCGGGAAGAAAGGGAATCCTGCG
CTTCTCTAAGAAAAGAAAAAGAGAGAGTTTACACAAGTAAAGTACTAAACGAGAAAAAAAGCATT
TATCGAGAAAAGGTCCCATAGTCATGATTGGGTCGACCCAATCAT
Right flanking sequence: Indices 482178 -- 482677
ATAGAAAGATGAAAGGTTTATTTTTGTTCGGTCAGTCTGTTTCCTCTCCTCTCGATTCACCTAAA
ACTTCTTTTGCCACTGACGTGATACTGATACAATGAGCCATCTCATTCTACATTGAGTTAGCATC
CTCACCTAACTTCCACTCCGTCTCATTAATTATTTTCTCTTTAAACATAACTTGCTTATCCCCTT
TCCAATTCCACCACCTAATCCTAGGCTCCCTTGCTCCTTCTCTTCCATCTCTTAATACTAAGATA
GAGTACTAAAAATCTATGTTGGGTTGCTACACTCTCTCCAGGTATCACCCTTACAATCCTTGAAA
TACTTCTGATCTGCTCGTCGCGTTAGGAAGAAGTAAATCTGACTAACATTAGAACCACTCCTAAG
AGTTCCCAAGTGCGAGTCTCTATTCCGTGTTGGCAAGTATCAAATCATACGCCATAGCAAAAAGA
TACTTTTCCGCGTTATCTCAAGAAAAAGGACGAAGAATTATAGAA
Found at i:487613 original size:33 final size:33
Alignment explanation
Indices: 487571--487636 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
487561 CCAGTTCCTT
487571 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
* *
487604 CAGAGATGGAGAAGTAGCTCGGTCAGTGGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
487637 TATCCGATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.39, T:0.14
Consensus pattern (33 bp):
CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
Left flanking sequence: Indices 487071 -- 487570
TGATAGGAAATATGCCAAGAATAATTCCATTTCATCTCTTGTGTGATCAAACGGGTTGCCCAATG
TACCAAATGCTTTCTATAAAGTGTGGAAATAGTCAATGTAGGATGGGACTCTGACCTAAAACATA
TGTGCTGGGTGTATCTTCCCGCCGACCAAAAACTTATGCCCAGTGCCAGACCAGAAAATAAAGGA
AATATAGGAATGTGGAAATAGGAATGTAAGAAAAGCCATCAAGCTAGGAACACAGAAAGCTACCA
CTTCTTGTAAACAAACCTATGCTATGAAACAATCAAAGTAGATCGGATCGTATGAGGGATGCCTA
CAGGGCAAGGATATCATGATTTGAACAAGCAGGGGAAAGTCAAGAAGCAAGGGCAACATTTCAAA
ATCGAGTACTAAAATATATAGCAGTATCTGATCCTTGCTTGGGAGGAATTCCTAAGAAAAGAGAG
TTCTCTCAGCCAGTGAGTTCCCTCTGCCAGACAAGCCAGTTCCTT
Right flanking sequence: Indices 487637 -- 488136
TATCCGATTGATAGTCTCCTACCCTTGGGAAGACTTCCATAAATAGAGATAGATCCCTCCGATCC
CTAAAGTAGAGGCACTCGTTTGAAGGAAGAGAAAGCCTTGGAACTACTCGTACCAAAGCCAGCCA
GTACTTTTCTTGATCGCTTATCCTCGATCTTCCAGATAGAGTTCTGAGTGCTCATTTCTTATAGA
ATCGATTTCTAACCTTAGTTGATAGACAGAGAAAGCCCTGTGCTGTGTGTGCGTATCTTCCTACG
AACTAGAGCGAAGCGGAGTAGCTTCTTTTTCCGCTTAAATCAAAGGATGGAATGTTGGACTATCA
ACCAACTGAGACTGCGCGAACTAGATAGCCGAACAGCTAAAGCAAGCAGTTACCAGACAAAGGCG
AATGAAAGGAAACACAAACCGCAAGGTCAAGATGTTTTCTAGCGGCCGTCTAGCGCATCCGTTTT
CTTGCTTGGATGAGTTCTGGAAGGGATAGAGGGATTAGGGATATT
Found at i:500621 original size:36 final size:36
Alignment explanation
Indices: 500581--500656 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
500571 GACTCCCTCG
500581 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
*
500617 TCCTCTTCCTCTGTCAATCAACCCTCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
500653 TCCT
1 TCCT
500657 TTTCTGTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.41, G:0.08, T:0.32
Consensus pattern (36 bp):
TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
Left flanking sequence: Indices 500081 -- 500580
TGTAACAAACAGAGCTATCTAAAGCTTGAAAGTAAGCAACAGAGCTATCTATTCCAACGTATTGG
TCCAACTCCACGGTTCCTCTCATCTTTCTTGTCGGAGAAAGCCTGTCTTCTGAGACATCCATTAA
TCAAATTTGATCAGTAACAAAAATCGTATGTAATGAAAGAAGAGTCAGCCCTTGGGGTGGGGCAC
GAGGGGGTCCCCTGTATGCAGGTCGCTACTTAACTTGACAAGCAGTGTTGCTGTGTAAAATTGAG
ATTGTGTGGGCGCGGTTCGCGATCTCTTCTTTCCTTTCCCAACCTAATAAAGAAATGCAAAAAAC
TACTAATTCTAGACCAGAAGATCTTCTCATGTTGGATATCAGAAATAAAATGGGTGATCTTTCGG
GAGGGAGTGCCAGTAGCACCAGTTCATCGTCTTTTTTGTCTTGCAATTCTAGTCTACACTCTCAT
AGTCCTTCTTCTTCAGAAGGATTCATTTCTTTTGGGACTCCCTCG
Right flanking sequence: Indices 500657 -- 501156
TTTCTGTGAACCAGCCATCCCCTTCTTCCGTGAAAGGAGTATTCTTAACGGACAGTGGTACTCCC
TCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCGTAGAATATCA
AGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAGATTCTAGTTG
CAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCTCCGGGATTTA
GTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGAATGAGAATTT
AGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGCATTCACCCTC
TCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTATTTTTATTGCGCGGAAGTAT
GGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGTAAGA
Found at i:501252 original size:34 final size:35
Alignment explanation
Indices: 501208--501280 Score: 139
Period size: 34 Copynumber: 2.1 Consensus size: 35
501198 GTTAAGCTTG
501208 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
501243 TGCGC-TTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
501277 TGCG
1 TGCG
501281 AATGATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.11, C:0.12, G:0.32, T:0.45
Consensus pattern (35 bp):
TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
Left flanking sequence: Indices 500708 -- 501207
ACAGTGGTACTCCCTCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGG
GTCGTAGAATATCAAGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCA
AGAGATTCTAGTTGCAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCAC
AGCTCCGGGATTTAGTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTA
GCGAATGAGAATTTAGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATT
TGGCATTCACCCTCTCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTATTTTTA
TTGCGCGGAAGTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGTAAGAGGGGAA
TCTTATGTCCATATTATCTAAAAAAATATATGAGTGTTAAGCTTG
Right flanking sequence: Indices 501281 -- 501780
AATGATTAACTCGTGTCTTTATGTCCATGTGAGAAGGCTAATAAATTATCTCTTTTCTTTGGTCC
GGGAAAAAGGAAGTAAGACCCTCGAGACGAGAACTACATATGGTCTGATACTGACTTCCTTGAAA
AGAGGAAGACAAGTTATGTAGGCAGTAGCCGTTCCAGAAATGCAGCGGTACCACAAGTGCTCATT
CATTGGTCCAACCTAGAAGCTACTTGGGAAGACTATGAATTGATTGCAAGTAAGTATCATGGACA
AGGAGGATTTTTAGGAGAAAGGAGATCCTCTCTCAACCCAATAGATGCAATGTAGGAAGACTAGT
ATCTTTAGTCCATGGGTGTAACACCATAAGATGGGATTGATGGTAATCTATCATAAATAGTTTCC
CTTTTTGTCTAGATGACGTCCCCACGGTGTCTATAATTTATGTCAACCAATAAGAAATACCCGAA
AGAAGATGCGTAGGCCTTCAATCATGGTGCAATGAATATCGTAGA
Found at i:503673 original size:7 final size:7
Alignment explanation
Indices: 503661--503754 Score: 170
Period size: 7 Copynumber: 13.1 Consensus size: 7
503651 AGAAAACGCG
503661 TATAGTA
1 TATAGTA
503668 TATAGTA
1 TATAGTA
503675 TATAGTA
1 TATAGTA
503682 TATAGTA
1 TATAGTA
503689 TATAGTA
1 TATAGTA
503696 TATAGTA
1 TATAGTA
503703 TATAGTA
1 TATAGTA
503710 TATAGTA
1 TATAGTA
503717 TATAGTA
1 TATAGTA
503724 TATAGTA
1 TATAGTA
503731 TATAGTA
1 TATAGTA
503738 TATAGTA
1 TATAGTA
503745 GTAGTAGTA
1 -TA-TAGTA
503754 T
1 T
503755 CATTGGCCAA
Statistics
Matches: 85, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
7 77 0.91
8 3 0.04
9 5 0.06
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (7 bp):
TATAGTA
Left flanking sequence: Indices 503161 -- 503660
ACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATA
TAAAAAAAGATCGGCCTAGTCGCTTCGCTCATAGGGACATATCTATCCGGATAGAGGAGAGGATA
GTCTAGATCAATTTTTATAAAAATATCTCTCTATATAGAATAGATAGGTATCTCTGTGGATAGAG
ATAAAGATAGGGATCCCTCGAAATATATGGAAAAAGTGCACTTTTTGACTACTACTACTATTTCT
TATTCTTAGACGAAACATCGTTTTTTCGATTTTGACTGAATTGGTCGGAGCGTAGACGAGCGAGC
AGAGCCCAGGAAAGAGGTCAGATCGTCATAGAGCAGTCGACTATAAGTATAAGACTGCTGGCCTG
AGAGAAGGCAGTCTCTCTCGGGAAACATGGCCCAGGGTTCTATAGTATAGTATAGTATAGTAGCC
AGACTATAGGAAAATCAAGTCTCATGTTGCTCCTCAGAAAACGCG
Right flanking sequence: Indices 503755 -- 504254
CATTGGCCAAAGTAAAGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTGTCAT
GGAATCAAGTCTATTTGTTCTTTTTTTTCGTTGGAAAAACCAACGCCGACGTCAAGAATGGATCA
GTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGGACAGTAACGATCGCGTAATAT
CAATTTATCGGCCTCGTCATCGAAAGCGGCTTCCAATTGCTCGGAAATTCTCAGCTATATGGGGG
ACTTTGATGGTGAGCAAAAAGAATTGATCAAGAAATTGGTAAACTTTCGCATGATCGATGGTAAA
AGAACGAGAGTTCGTGCTATTGTTTATAAAACTTTTCACCGCCTAGCTCGAACTGAACGCGATGT
AATCAAACTTATGGTTGACGCCGTAGATAATATAAAGCCAATATGCGAAGTGGTCAAAGTAGGAG
TCGCAGGTACTATTTATGATGTTCCTGGGATTGTAGCCAGGGATC
Found at i:504750 original size:12 final size:12
Alignment explanation
Indices: 504733--504761 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
504723 ACAAAGATTT
504733 TACTTTGACTTA
1 TACTTTGACTTA
504745 TACTTTGACTTA
1 TACTTTGACTTA
504757 TACTT
1 TACTT
504762 AGGATTAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (12 bp):
TACTTTGACTTA
Left flanking sequence: Indices 504233 -- 504732
CCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGGAGCAGCTTT
CAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGCTT
ACCGAAAGAGGGGAATTTCACGTAAGAGAAGGGAGAATCTTCATGGACTGGCTTCCACCAATCGG
AGTTTCGCGCATTTCAGATGGTGGTAAAGTGATACCACATAAGGAGCTCTTCCTCATTCAGTCAT
ACTCAACAAAAGTCAGAAATGTTTGACCCTGATCCTTTTTTCATCTTCATATAGAAAGAAAATCG
GCCTTCCTCATACTCCCCCCTTCATTCATGGAGTTGGAGGAATCCACAAGAGGCCTGCCCGTTCA
TAATTGCATAAAAGAACCATTCTTTTTATGAAAACTCTTGTTCCAAACAAGCAAGGGAGCAACTA
GCGCTAGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGATTT
Right flanking sequence: Indices 504762 -- 505261
AGGATTAGGATCAGCTTGCGAATTTGCAGCACCGTATCTATATCTATATCTATATCTATATCTAT
ATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTA
TATCTATATCTATATCTATAGTAGAATCAAGGGCAAAGAAAGGCAGGCAAGTCTCATTAGCCTTC
GTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTTTCTCGGTAAGAAGGCTGCGT
GTTCAACAATGGGTTCGGCAACTACCATCTGTAGTGACAAGACCGGTACACTCACTTGAAATCCG
GTAGTAACATTGTGTTCTTTCACCTCTTATGTTATGAGTCTCGGAGCAAACAACAAAGCATCAGA
TGAGAAAAGGATCTTCTCAACCTCTTACGATTTCAATTGACCAATGCCATAGATAGTATAGTAAA
GATCCGCAGTACAGGTGTAACAGCAATCAAGCTACTAAGGATAAG
Found at i:504807 original size:6 final size:6
Alignment explanation
Indices: 504796--504911 Score: 232
Period size: 6 Copynumber: 19.3 Consensus size: 6
504786 TGCAGCACCG
504796 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA
1 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA
504844 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA
1 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA
504892 TATCTA TATCTA TATCTA TA
1 TATCTA TATCTA TATCTA TA
504912 GTAGAATCAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 110 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
TATCTA
Left flanking sequence: Indices 504296 -- 504795
TTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGC
TTACCGAAAGAGGGGAATTTCACGTAAGAGAAGGGAGAATCTTCATGGACTGGCTTCCACCAATC
GGAGTTTCGCGCATTTCAGATGGTGGTAAAGTGATACCACATAAGGAGCTCTTCCTCATTCAGTC
ATACTCAACAAAAGTCAGAAATGTTTGACCCTGATCCTTTTTTCATCTTCATATAGAAAGAAAAT
CGGCCTTCCTCATACTCCCCCCTTCATTCATGGAGTTGGAGGAATCCACAAGAGGCCTGCCCGTT
CATAATTGCATAAAAGAACCATTCTTTTTATGAAAACTCTTGTTCCAAACAAGCAAGGGAGCAAC
TAGCGCTAGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGATTTTACTTTGACTTATACTTT
GACTTATACTTAGGATTAGGATCAGCTTGCGAATTTGCAGCACCG
Right flanking sequence: Indices 504912 -- 505411
GTAGAATCAAGGGCAAAGAAAGGCAGGCAAGTCTCATTAGCCTTCGTCGATGGGACAAACGCTGT
TCGTTAGAACTAGCATTTTGTTTTTTCTCGGTAAGAAGGCTGCGTGTTCAACAATGGGTTCGGCA
ACTACCATCTGTAGTGACAAGACCGGTACACTCACTTGAAATCCGGTAGTAACATTGTGTTCTTT
CACCTCTTATGTTATGAGTCTCGGAGCAAACAACAAAGCATCAGATGAGAAAAGGATCTTCTCAA
CCTCTTACGATTTCAATTGACCAATGCCATAGATAGTATAGTAAAGATCCGCAGTACAGGTGTAA
CAGCAATCAAGCTACTAAGGATAAGGATAAGGAAGAAGTGCTCTTTATTTACAATATGGGCTTTC
GTAAGCATAAATATCAAAAGAGAGGATACCACACCAGATACGGTGCAACATACTTGAGTGGAAAG
AGGAGAGTTTTTCCTCCGAGGGCGAGTTCGATCAGGCAGACATCG
Found at i:515448 original size:5 final size:5
Alignment explanation
Indices: 515438--515472 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
515428 GATTTCTGGG
515438 CCGAT CCGAT CCGAT CCGAT CCGAT CCGAT CCGAT
1 CCGAT CCGAT CCGAT CCGAT CCGAT CCGAT CCGAT
515473 GGGCGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (5 bp):
CCGAT
Left flanking sequence: Indices 514938 -- 515437
AGCAGTGGTAAAGAAATCCTTTGAATGGATCAGTGAGTTCCGGCACGATTGCTGGAACGAACGGA
ATCTACGGGAACGAGATCTTTCTGTTGGCACGATATCTTTCAGGAACTGCGCTAAGGACGAATGC
TTGATTTGCAATCTTTCAAGACGATTTTCTTGTAGCAGATGTGGAGATTGGCATAACGGGTTCTA
CGTGAAGTCAGCCGTTCGTCATCATTTGAGGGTTCGGGTCGGGATCATGGCCATAAATCGCTACT
TTTTCCACTAGAGCGAATAGCATTCTTCGAAACAGGCACGCACAGGACTTGAAGCAGAATCAGAG
AGTGATCCCTTTCCAACAGACTGATCGAATTCCAGTGATACACTACGCCTGGCACTATTCGTCAC
ATTAGTAGTTAAGTTACTCATTTGTTACGAACAAAGAGACGCTAGAGATTCTATGAACTTCAGAT
CGATGCCATTCACTAATCTCAATCGTCTTTCTATGGATTTCTGGG
Right flanking sequence: Indices 515473 -- 515972
GGGCGATAAACCTTCAAAGTCGCTGCTACGGGCTCTGTGGTGCGTCTCAGAGCCCTTCCCCGTGG
GGGGTTCCCGTTCTGCTAATCTTGCTATCTTCCCCAGGTTTGCTCGTTTCGATTGGAACAAGAAG
TCCGTATTGGTATTTCTTGGTATTGGTAGCAGATGTTCAGCGGTAACAAACAGTAGCTGCAAGTA
GATCATCTCTCTTTCTTTCGTACAAGTAGATCGTTTCTGTTGGGATGAGATCTGTAGTCTAAGAA
TCGGTTCATAGGAAAGCACGCCTTGCAGTTGGCATCGGTAGAAGATTTCCGTCTTGTCCCTCGGA
GTGGAGCTAGACTCACTTCCTTTGTTCGTAACATTATACGTTACTCACTGAGGAAGAAGGGAGTA
AAGTATCTACACTCGTATCGGATCTGGAGATCTGCCCCGGGATGGAAAGGTATCGATCGACCAAG
AACTTGTCGAATTTCTTTGACCTCGGAGCCCGTACAAGCTCTTCT
Found at i:516115 original size:5 final size:5
Alignment explanation
Indices: 516105--516175 Score: 142
Period size: 5 Copynumber: 14.2 Consensus size: 5
516095 CCTCGGCCGC
516105 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
516155 TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA T
516176 GGTAATATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 66 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 515605 -- 516104
CGTATTGGTATTTCTTGGTATTGGTAGCAGATGTTCAGCGGTAACAAACAGTAGCTGCAAGTAGA
TCATCTCTCTTTCTTTCGTACAAGTAGATCGTTTCTGTTGGGATGAGATCTGTAGTCTAAGAATC
GGTTCATAGGAAAGCACGCCTTGCAGTTGGCATCGGTAGAAGATTTCCGTCTTGTCCCTCGGAGT
GGAGCTAGACTCACTTCCTTTGTTCGTAACATTATACGTTACTCACTGAGGAAGAAGGGAGTAAA
GTATCTACACTCGTATCGGATCTGGAGATCTGCCCCGGGATGGAAAGGTATCGATCGACCAAGAA
CTTGTCGAATTTCTTTGACCTCGGAGCCCGTACAAGCTCTTCTTCCACAACCATATGTGACCTCC
CCGAGTTTCGAACCCCTCGCCCTCTAAATGTGGATCTCCTCCTCCTCGTTGTTGCCGTGGAGAAA
GACCGTATTCACGTCTAGTTGAAATAGATGCAAGTCCTCGGCCGC
Right flanking sequence: Indices 516176 -- 516675
GGTAATATAAATTAGTCTCTCTATCCTTTACCAAAGCATGGTGCGTCTCTCCCCATCCCCAAGTG
TTCCTATAGAAAATCCCTCCCGCCCCCATGGGGGGGATTTCCTATGGGAGTGGGGATCTATCTCT
TTAGCTCACCTCACACTGAATTCCAGGGAAAGATTGGACATCCTCGGATTACTAAGATGAATGAA
CTCTACTCTCGTATCGTCTCTACTCGGATCTATCTGGAGAATGGCATGGCCTGTACAGTTGCGAA
AAAGCCCACATCTGTCCCGAAGGGTCATTATTGACCAGGAATTCCGAATAAAGAGATTATTATTC
CCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGACACCGCTC
TATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTACCATTCTG
TGGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGGGCAGT
Found at i:517016 original size:18 final size:18
Alignment explanation
Indices: 516995--517047 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
516985 TTACTCATGA
*
516995 ATTATACGTGACTCGTTC
1 ATTATACGTGACTCATTC
**
517013 ATTATACGTTCCTCATTC
1 ATTATACGTGACTCATTC
517031 ATTAGT-CGTGACTCATT
1 ATTA-TACGTGACTCATT
517048 TGTTCCGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (18 bp):
ATTATACGTGACTCATTC
Left flanking sequence: Indices 516495 -- 516994
TTATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGACA
CCGCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTACC
ATTCTGTGGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGGGCAGTCCAATCTCATCAAG
AGTAGACAATCATATCAACTCCGATATTACACACTTAAAATGCTTCTCCCAAGCCCAAGTCAACC
CCAACAATTCCAAGAAAGCGTATCTCCTATCCGGGACAAGCCTTGCTTTGGGAATATAGAGGAGT
TCACACCCAGTCCAGACTTCACTGTATCTTTCGTTTTAGGCCAGTCCAATGATACGATACGAGTG
CCTAAGGCATTCCACGGTTCCTACTGGAAGTCAAGTACCCCTCGCTAATCCAATGAGGAACTACC
GGTTATATTCGTCTTTCTATTCGTAACGTTAGTAGTTACTCATGA
Right flanking sequence: Indices 517048 -- 517547
TGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCCCTC
ACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATACTT
GCTTGCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAAT
CTAAAGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCAATTCTAAAGTACC
TGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTTAACT
GAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACGTTTA
AAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTACAGCA
AGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATAGTTT
Found at i:518887 original size:5 final size:5
Alignment explanation
Indices: 518874--518904 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
518864 AGTGAATCCG
*
518874 TACTG TACTA TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA T
518905 TAGAACACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 518374 -- 518873
CATCTTGTGGAATACCCCAAGTATCATATCATAGTCATAGCATTGGAGCTCGTATCGTATCGGAA
CACTTGTATCTCGTATCAACGGAGTCAAGCATCTAATCTATATTCTACTCTTCTACTCTAGAGAT
TGGGCCTGTACGAAGATCTTTCTTTTTGCGGGCTAAAGATCACTCTTGTCCCTCCAGTGAAGTGG
TAGTTTTCTTGCTTTGCTTATAGAACAGAACTGAGTCTCTTATGTTCGTAACATACATTAAGTGT
TACTCACTCCATTGGCATCTACAAGTGGTGCTTACGAGAGAGGCCTGCCTAGACCGAGATAGGAA
TCATCAGTGGATACGAGCGAGAAGAAAGAAATCTATCTGTCCAGCTTTGGCAGTAGGGAATCATA
CCAATTCGTCTTTATACTCATTCGTTATACGTGATTCGTTCAACACAGTCTAGTCGATCTGTCTT
GTCCCTCGCAACTTGACAGTGGAAACAGAAGCATGAGTGAATCCG
Right flanking sequence: Indices 518905 -- 519404
TAGAACACATCTCTTCACCCAGTGCCATGCCACAGTGAGTGGAGCTAAGGATGAATGCATGGGAT
CCGTGTTCTAAGTGTTGTCTTAAGTGTTCTAAGTTCAGTTGTATCTTTTTCTTGTAAGTTTCCGA
ATATTCTAAAAAATATTGGAATGCCTCTGTCTTGTCCTTTGAGAAGTGAGTGGAGGGTAGGATCC
CGCCTTCTTATATTCGTCACGTTACAACTCTTATCCTTCGATTTCGCAACGAAGGAACTCAGGCT
TGGTATGGTAGGAGGATGGATATGCTTTGTAGCAGAATCAGATGCTGGCTTTATATTCTCTTTTC
TATTCTTTTCAAGCGAGAAACGACTAATTCATGAGGAACTCCCGGTTATATTCTATTCATTATAC
TTGCCTTGGTTGTTCCGAATCTAGGGACGAGCAGGGATTAGTATAGTATAGAAGTGACTCATGAA
TTACAACTCTTATCCTTGATTATTATATTATAGTGTGGAAGACGA
Found at i:524681 original size:17 final size:18
Alignment explanation
Indices: 524655--524694 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
524645 CAATTTGAAT
*
524655 TTCTCTTAATTAATACG-
1 TTCTCCTAATTAATACGA
524672 TTCTCCTAATTAATACGA
1 TTCTCCTAATTAATACGA
524690 TTCTC
1 TTCTC
524695 TTTACTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.45
Consensus pattern (18 bp):
TTCTCCTAATTAATACGA
Left flanking sequence: Indices 524155 -- 524654
AAGTCAAGTCAGAATATGGAATATGAGTGGGCCGCCAAGGCAAGACTTCTATTCTCCCAACTCCT
GAGAACTAATAACAGGATGAAACCGGAGACCAATAGGCGGGCATCTTACCAATAGATCTACGGAA
AAACTAGCTAGATCCGGAGAAACTAGCTAGCTATATGATAACCGGAGAAAAAGAGAGTTGTCTTT
CTCTTTACCAGATTCCCGAGTGAGAGTCCGCGCTGGCCCCGGGGCAGATATGGACATTGCCAATC
CCATAGGCAGATGGAAACTTATTCATTCGAGAACTCTCCACCAACGGAAGATATGGAAATGCACG
GTACAACACTTAGCCCTTAGCCCGAGAAAGAGATCTGAATACGGATAGTGGAGTACTTCCCTCCG
AAATCCAAAAAGTGCCACGACTTCCTAAACCCACCTTTCAAGTTGCGATACAGGAATAGTTCGAT
TTCGAAGAATGGCTTGAGCGAGTCCTTTCCAATTCCAATTTGAAT
Right flanking sequence: Indices 524695 -- 525194
TTTACTCCTTTACTCTATGATAAATTACAGTAATTAGCGAATGGTCCGGACTTGTCCGGACGGTT
TTCAAAATAATAAAAATAATGATTAATGATTGATTTCTGACTATTCTCTTCTCTTCTCTGTCTCC
TTCAAGCTTCAGAAAAAGATTGAAAGTCGGTAATTTCAGGAATGGCGATTTTTGATACGATGCAA
CTGGTGAGGCCAGATGTGTATACAATCCGCCTTAGAAAAGCGTTGTCCATGGCCTCCTTGATTCT
GCTTGGATGAGAACCCACTGGCACTAATCGAATATCGGTTCCCAGCTCGCGCGGAGAGGGGGTCC
CACTTTAAAGAGTGTGTATAGTTTTTTAAAGGTACCTCGGTTGTTTAGAAGAGGCCCTGCTGGTG
AACATCATTATTCCTTTCTTCAAATCCTTAATCCGGTCAATATATCTCGGATAGAGCTGCAAATC
AAAGCAAATACAGTTCTATGTCTCTTTACTTGCGAGTTCTCTTTC
Found at i:533529 original size:6 final size:6
Alignment explanation
Indices: 533518--533619 Score: 197
Period size: 6 Copynumber: 17.2 Consensus size: 6
533508 TACTGTACTA
533518 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT
1 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT
533566 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGG-
1 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT
533613 TAGGGT T
1 TAGGGT T
533620 CCGTTGAGAT
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.05
6 90 0.95
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TAGGGT
Left flanking sequence: Indices 533018 -- 533517
GCTTCCGATCAGGTGTGGTCAATTTGATAGCTGCCAGTTTGCAAAATTATGGTTGTCCTATCGGC
GCTAGAAGAAGCGTCCATACGCCGCTTTTAGGTATCTCCGCTTCAGACTGAAGTTTCCCACGGCA
CGGCTTAGAATAGAAGACGTTGAAGCCGCACTAGCTATGTGCCAGGACGATGATACAGCAAGATT
AAGGATCTCCGTAAACAGAAGAAACTCAAGTGAAAGAAGCCCACTAATTGAATAGTCAACTTAGA
TGGTTCCACTAGAATGGAGGGCAACTTCGGACACTCCTCTTATTTTACTAACTTAATATTCTCTG
GCTGGTTCTTAGAGTTTTCGTCCTGACATTGTTAAGCATACTGCGATTCACACACCTACCGACTT
ACGACTGCTTACACAATAAAGGTTTTCACTACCTTAGCTTACGGATAGAATGAATGCTTGTACTT
GCCCAAGGTGACTTCGCATTACTCTATACACAGGGTACTGTACTA
Right flanking sequence: Indices 533620 -- 534119
CCGTTGAGATGAGCCTTCCCCACTGTACAAGAGTTATAATATTCTATTAGATTGGGAATTGTACC
CGCTGGTTTTCTTTTAAGAAAAGACACAGAGTCCTACTTGGGATTGGGACTTCCACAGTAGCTCC
TTTACCAAGACTTGATAAAGTAGTTCGCAGTAAAGAAAGAACACGGATACGTTACTAATAATAAT
AAGATTGGAGTTAAGATGCGGATCAATTTGATATGCTATTTGTTATTAAACACTGGTGTAGTACG
ACTACATACATAGCCTTCTTATCCAGTACCAAGGGTGAAATAAGTATTCAAAGTACCAGCAACAC
TCGAGAAGAGAGATTCTGTCGAAAGAAGAAGTGCGCCAACGCTGGAGACCTACAATATACCATAT
CCGAGGGGCTACCCAACAAGGAGTAGCTACCCAGTGCGATAGCTTGCTTTTACTAATTAATAAAG
GACCAACTTCTATACTCTCCGTGAGAGACATCGGAAGAATAAGGG
Found at i:538930 original size:15 final size:15
Alignment explanation
Indices: 538910--538954 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
538900 CGAAAACGCG
538910 TATGTTAAGTAAAGT
1 TATGTTAAGTAAAGT
*
538925 TATGTTAAGTTAAGT
1 TATGTTAAGTAAAGT
* * *
538940 AAAGTAAAGTAAAGT
1 TATGTTAAGTAAAGT
538955 AAGGACAGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (15 bp):
TATGTTAAGTAAAGT
Left flanking sequence: Indices 538410 -- 538909
GTTGGTAAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGT
TTAGTCTGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTT
TGTTTTTTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTT
GATGTTAACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATAT
GCGATCACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTG
CATCCTGCACACCAGAAAGTAAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTG
AAACGTTTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGT
CGATCGATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCG
Right flanking sequence: Indices 538955 -- 539454
AAGGACAGCAAGCCAGTAATGAGAATAAGCTCTTCATCTTAGTTTCCGCTTTCAGACAAGTACAG
CGTCCACTTTTCTCATATTTGCAAATTGCAGATCTTAATCTTAATAGGATGTTGGCTAAAATAAG
GGAGGGATCGGATCCAAATACGCAGTGCAAGATGAATGGCCGAAAGAAAGATTAGAAAGTATGCC
CTCGATTGGGCTGTGACCGACACACTCACATTGAGTCGCCGATACAGGTAGTGGTCAGTCTGCGC
AAAGCCATAATACCAGATATCGGAAAGCGAAGCGTGGTGCTAACATGACTAAAAAAACGATTCGG
AAATCTGGAACGAAGAGAAGTTAGTAAATAGGCCTTTTGGGAAGCCCTTGATCGAGTAGTGAAAG
CATTTGATCCATCAGATCAGTGCTTGATCTTCTACTTATACTTAATAGGTTCAAGACCTAAATAA
AGGAATGAAAACTGCTGCAAGATCCGCTTACTTCTTTCTCTTAGT
Found at i:538944 original size:10 final size:10
Alignment explanation
Indices: 538913--538954 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
538903 AAACGCGTAT
538913 GTTAAGTAAA
1 GTTAAGTAAA
* *
538923 GTTATGTTAA
1 GTTAAGTAAA
538933 GTTAAGTAAA
1 GTTAAGTAAA
*
538943 GTAAAGTAAA
1 GTTAAGTAAA
538953 GT
1 GT
538955 AAGGACAGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.33
Consensus pattern (10 bp):
GTTAAGTAAA
Left flanking sequence: Indices 538413 -- 538912
GGTAAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGTTTA
GTCTGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTTTGT
TTTTTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTTGAT
GTTAACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATATGCG
ATCACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTGCAT
CCTGCACACCAGAAAGTAAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTGAAA
CGTTTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGTCGA
TCGATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCGTAT
Right flanking sequence: Indices 538955 -- 539454
AAGGACAGCAAGCCAGTAATGAGAATAAGCTCTTCATCTTAGTTTCCGCTTTCAGACAAGTACAG
CGTCCACTTTTCTCATATTTGCAAATTGCAGATCTTAATCTTAATAGGATGTTGGCTAAAATAAG
GGAGGGATCGGATCCAAATACGCAGTGCAAGATGAATGGCCGAAAGAAAGATTAGAAAGTATGCC
CTCGATTGGGCTGTGACCGACACACTCACATTGAGTCGCCGATACAGGTAGTGGTCAGTCTGCGC
AAAGCCATAATACCAGATATCGGAAAGCGAAGCGTGGTGCTAACATGACTAAAAAAACGATTCGG
AAATCTGGAACGAAGAGAAGTTAGTAAATAGGCCTTTTGGGAAGCCCTTGATCGAGTAGTGAAAG
CATTTGATCCATCAGATCAGTGCTTGATCTTCTACTTATACTTAATAGGTTCAAGACCTAAATAA
AGGAATGAAAACTGCTGCAAGATCCGCTTACTTCTTTCTCTTAGT
Found at i:548407 original size:5 final size:5
Alignment explanation
Indices: 548399--548435 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
548389 CATTTCATTT
548399 AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG AG
1 AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG AG
548436 GAGGGGAGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.41, T:0.19
Consensus pattern (5 bp):
AGTAG
Left flanking sequence: Indices 547899 -- 548398
GAGAAGCTGGCCTGGTCAATCCAAGAAAAAAGGATCAGTCCGATTCAGTGGTTTCGCCCATAAGG
GAAGCATACTTTGATCAGAAAGGCGGGTCCTCTACGCTTTGAAAATAGCAGGTAGTAGGCCCATG
GGAAAACAGACTTGCTCAAATCCATATTCTTGTTTCCCGAGGCAAAACCCACTAGTGAGTCAAGT
GAAAGTCCTCCAATCTGTGAGGAGAGGAAAATCCTTATTGCATAGTTGAGCAACTATCTACTATT
GATGACTGAGGCATTACAACGACGAAGATTGCAGATTTGGAAAGAGTATCATTGTCTGACAACTC
TTCCTTTATACAGGAAGCAACAGTAGGAAATATGAGGAGTTTATGTTCACATCCACCAACCTACC
AGCTTACTAGGACGGACTATGAAGAACTGCAGCGGATGACAATGGCGCTTCTATTCGAATCGAAC
ACAAAGACGACCCAAATACAAATACTATTTCATTTCATTTCATTT
Right flanking sequence: Indices 548436 -- 548935
GAGGGGAGCCCCACCTTTGATATCCAGTCGTGTGCCTGCCTGCTCTTAGATATGATTATTTCGAT
TAGACCGCTCTGCTTTGATCGGGATCTTACTCCACTAATGGTTCTGTTTTCGTACCAACTGCCGG
GCCTACGCTTTTCGAGTGTAGCCTATCTTATCTGAAGAGCGGCGGAGAAAAGGATACCCGCAGGG
CTGGGCTGGCTCGGGGGAAGAGATTGATACTGGTCTTTCGCTTCGGATCTGTCTAGAGTGTGATG
TGGCCCTCTTCTCCAATCGACTACCTCAGTAAGTTAGACTAATACCAGATCTGGGAAATCTGATC
CCCGCGGAAGCATGTTTGCTTGATCTCTATTTGACATCTACAAGGCACTAAAGCTTCAACCATAG
CCGATCACTAGATTCAGAACTACAGCCGTAAAGGATTGAGCAGCACCATTGTAGGAATAGCTCGC
TTTAATTGGCGAAGGTTCGTATACAACTAGCAAATTCTACTTCTA
Found at i:553344 original size:5 final size:5
Alignment explanation
Indices: 553334--553373 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
553324 CTTCTACTAT
553334 TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA
1 TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA TCAAA
553374 CACAGAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
TCAAA
Left flanking sequence: Indices 552834 -- 553333
GATCGGAGAAAAAAACAAGATTCACTGAATTATGATACGCAAATAGTCTTTAGTGCAGGAATGCA
GGTAGTACTTTTTTTCCAGCTAAGTGAGCAGCACTTGTTCTTCTCTTCGGACTCCGAGGCGGACT
TCCGTACTTGATTTTTCTAAAGCTAGGCCATCTTCTGCTGCTTCATTTAGGAAACCCTACCTAAA
CCCTTCAAGCGGCGGAATATGGGATAGGTAAGCTATGATTCAAGAAACCTGCCAGTCCTGAAGCA
AGGTAACTCATCTAGATCCAGATCTGGTTCATCACTGGCTATATTCTCACCGGCATGGCATCCTT
TGTGGATCGAAACGGAAACTGATCACTGGTTCTATTCGAAATCATATACCCCTGCTGAGCCTGCC
GCCTTACCCAAGACCAAGAAAGAGATCCGGAACATGAGAATAACCGGCACTTTCCCGGAGCATGC
CTGCCTGCAAATCGAATCCTATCCTATGAAACAAGCTTCTACTAT
Right flanking sequence: Indices 553374 -- 553873
CACAGAAACCTCAGCCGGAGATGGCGAGTCAAGTATTGCACGCCGGTTGGAAGTCAAGCTATCTG
GAATGCGGAGACCCCACCCGTAGCTGGTTCTAGATCCGGATAATCAATCACAAGATCATGCGGAG
AATTTAACAGAACAGCTGGCATGCGCACTCAACTACTTACAAATGCCCGTGTTTTTCGTCATCAC
TAGGATTTTGCCTCGGCAAACCAAACCAGAAAATGGATTTGAACCAGTGCAGCTCGCCATGGGAC
AAAAGTACGCAACCCAATGGCACCCTCGAAACGAGTACGAAGATAAGAAAACTTGCTCTCGCCAA
GTGGCAAAAGAAGGCCAGTTACCATTCCATTACCAGATCTATGCCCAGCCCTGGCCCTGAAACCA
GACGACAAGAGCTTGACTCCGTTCTTCGTGTACCCTTCCTTCTGTTCTTCGTGTAGCTGCACTCC
ACTCACAGTTGGTTGACAATTCGGATTTTATCACTCGATCCAGTG
Found at i:556314 original size:21 final size:21
Alignment explanation
Indices: 556279--556338 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
556269 AGGGGGTGGA
* *
556279 TAGTAGCTGTAAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
*
556300 TGGTGGCTGTGAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
**
556321 TAGTGGGAGTGAAGAAGA
1 TAGTGGCTGTGAAGAAGA
556339 TAGTGACGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.42, T:0.18
Consensus pattern (21 bp):
TAGTGGCTGTGAAGAAGAAGG
Left flanking sequence: Indices 555779 -- 556278
AGGGCATTAGAAAAGTATGAAAACTTCGGTGTTTCTGCAAAACATAAAGTATTGCAATGTTTAGT
ACACGTGGTGACATCACAATCAGACAACAGTGTTAGGTATGTCTATGGGAACATCTTTGCACTAG
TTAGATTAGGTACTTATGTAACAGTGTGGTACTGTTATACTGAGAGCGCACCAGATTTCATATCT
GTGGACCCGCACTATCTTGATATAGAATTGATTATTGATTTATTCAAAGTTCGTAAATTATTCGT
ATGGATTCCATACGAGGAAGTGATTAGTACATCAATCTTAGAAGCTTATGATGCGGTTGTGGAAA
GGACGGCTTTAACGGATTGCTTGGATAGAAAGTTGAGAGAAGAGGAATTGTCGGATAAATTCGAA
TTCTGGGGGAAATGCTCTGATGGTGATCATACCATAGATTCTGTAGAGGAGAATGCCACTATAGA
ATATGCTAGCAGTAAAGAAGGTAGTGCCTGTAAAGAGGGGGTGGA
Right flanking sequence: Indices 556339 -- 556838
TAGTGACGATAGTGACAATCCTAGATACCTGGCATTCGGTGTGGTTGTCCTTGTAGGTGTGTTAT
TATACGTCTGGTATTGTTCTAGGTAATTCTATATTTATTGTGAAAACCAGAAATAAGAGTTTCAG
TTCATACTTGGCGGTAAAGGGATAACCTTTTTGTCTTGAGTGGAAATAGAATTCCTTTTGCAAAG
CTAGCTCTTATGGCGCATTGGTGCACAATCGTGCACTGCTTCTTCCTCATAAAAGAACCCGGCTT
TCCTTCCTATATGTTTAGGAGAAAAACCTTATCCATTAAGAGATGGAACTTCAAGAGCTGCTAGG
TCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACCTCCATACCAAGATTAGCACGGTTGAT
GATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAAC
CATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGATCC
Found at i:557699 original size:20 final size:20
Alignment explanation
Indices: 557674--557711 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
557664 GTCTCCCCCT
557674 CTTAGAGGCTTTCCTCTTAG
1 CTTAGAGGCTTTCCTCTTAG
557694 CTTAGAGGCTTTCCTCTT
1 CTTAGAGGCTTTCCTCTT
557712 TTTAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.42
Consensus pattern (20 bp):
CTTAGAGGCTTTCCTCTTAG
Left flanking sequence: Indices 557174 -- 557673
ATCAAAGGCATTCCCTGGTTTACTAACCCTTATAGAGTACATGAGCCAAAGCACAATCCATCCCT
TCCAATCAGACAAGAAGGAATCCGATGTATTGATCTTCGTCTGTACTGTGCTGTACAAGACAATT
ACCAAAGATCACAACTAATGATCTGTTTGACACAAGACATGACATGACCTGGCGGATCATATACA
GAAATGGGTTTAGCCTTCTCCTTGGCTTGACTCTTGTAAGTGAAAGGTTGGATCATATCTGGTTT
CCGGGAAGGTGCCTCGCTATTCCTCTGTTTTGTAGCTGACTAGTAAAGGTGGCCTAGCCTGCACA
GGTTCGTTGGTTTCAGCTTCTGCTTTACTTGAGTGGTTTCGGGCTCTGTTTGGTATTAGCTTGAG
AAGCGGTTGTAATTGTTCATTCATATCTTGTTTCAGCAATGGTCTATACTATAGAGCTCGGGAAT
GCATTCCATGCCTATTCTTCAATATGAGAAGGGGTGTCTCCCCCT
Right flanking sequence: Indices 557712 -- 558211
TTTAGCAGCATCAGCTTTAATCTCCCGATTAGCAATCATGATTTCCGAATTAGAAAATTCATTTC
GGAGATCTTCATTCTCCTCTAACAAATTCATAATTATCCGATAGGAGGTCGGATTGATACTTTTC
ACATCAAAGTCACCTATATGGCAGGGCTTAGTATCAACCCATACTCCATTTTTGTCGAACACATA
CTCCCTCTTTTTACTTTCTAACCCCATGGTATACTTACACATTTTCTCTTGAACCAACAGTTCAC
GGAAGTTTCTACTGAACTTTCGGACATATGAAATCACTTTTTTAGCCCTAGGGTCAGCTAGCTGG
TTGATGAACCATTCTTCATCAGCCTCATCTTTACCCGCTCCTTTAAACTTTATTATGGGTTGGTC
CACACTAGATGCCTTAAGCATATAGGACTTAGGTGCTAAAAAGATGCCATATTCGACAAAGTGCT
CATGCTTAAACTTACCCAAAGCGGTAGGTGATACCTCTTCTTCAG
Done.