123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: MK714017
Parameters: 2 7 7 80 10 50 500
Length:  517520

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16250--16278	13	2.2	13	100	0	58	41	13	13	31	1.84
42350--42479	5	26.0	5	88	0	179	20	20	6	53	1.68
59246--59318	27	2.7	27	85	4	94	36	13	16	32	1.88
59700--59735	18	1.9	19	88	5	56	36	33	2	27	1.72
93664--93697	15	2.3	15	89	0	50	11	47	2	38	1.55
99209--99248	18	2.2	18	86	0	53	37	20	17	25	1.94
105545--105574	15	2.0	15	93	0	51	33	16	30	20	1.94
120800--120891	31	2.9	31	81	1	103	31	17	28	22	1.97
132086--132111	13	2.0	13	100	0	52	15	46	7	30	1.74
140883--140953	31	2.3	30	78	7	72	40	8	25	25	1.83
153958--153992	18	1.9	18	100	0	70	34	11	25	28	1.91
181043--181083	20	2.0	21	90	4	66	60	7	12	19	1.54
181043--181084	21	2.0	21	86	9	59	61	7	11	19	1.52
195222--195292	5	14.2	5	84	0	88	19	19	8	52	1.72
230968--230997	12	2.5	12	94	0	51	16	30	10	43	1.81
236676--236754	39	2.0	39	97	0	149	31	18	27	21	1.97
272640--272677	13	2.9	14	88	7	53	23	18	7	50	1.73
326129--326260	5	26.4	5	99	0	255	39	20	0	40	1.53
359079--359108	14	2.1	14	100	0	60	46	0	16	36	1.47
362920--362947	14	2.0	14	100	0	56	35	14	28	21	1.92
387201--387253	5	10.6	5	100	0	106	0	18	0	81	0.70
400799--400876	23	3.3	23	92	3	138	15	32	28	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414753--414829	5	15.4	5	100	0	154	40	0	19	40	1.52
415331--415366	15	2.3	17	86	13	51	11	16	22	50	1.77
426339--426502	15	10.9	15	93	0	229	20	20	8	51	1.73
426336--426506	25	6.6	25	90	6	252	19	19	8	52	1.71
426336--426506	10	17.1	10	90	0	216	19	19	8	52	1.71
453155--453198	22	2.0	23	86	4	63	31	18	25	25	1.97
464506--464551	24	1.9	24	90	0	74	17	15	15	52	1.76
485260--485302	18	2.4	18	81	18	54	34	25	20	18	1.96
495920--495954	9	3.9	9	100	0	70	22	20	22	34	1.97
516023--516059	16	2.3	17	81	13	51	56	29	10	2	1.47

Tables:   1

The End!