Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: FP885845
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 364950
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:23282 original size:42 final size:42
Alignment explanation
Indices: 23223--23306 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
23213 CCAAAAAAGA
23223 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
23265 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
23307 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 22723 -- 23222
AGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTAT
TCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 23307 -- 23806
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:26262 original size:18 final size:18
Alignment explanation
Indices: 26222--26264 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26212 CAGAACCTAC
26222 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
26241 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
26258 CATAGTC
1 CATAGTC
26265 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 25722 -- 26221
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 26265 -- 26764
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:27646 original size:32 final size:32
Alignment explanation
Indices: 27609--27757 Score: 289
Period size: 32 Copynumber: 4.6 Consensus size: 32
27599 ACGCTCCGCT
27609 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
27641 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
27673 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
27705 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
27737 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
27758 CAAATAGGAA
Statistics
Matches: 116, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 106 0.91
33 10 0.09
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 27109 -- 27608
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 27758 -- 28257
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAATGAACAGACAAATCAAAAATTTCACTTTGAATTTCGGACCTCA
ACATCCTGCTGCTCATGGTGTTTCACGATTAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTG
CAGAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGA
Found at i:120222 original size:18 final size:19
Alignment explanation
Indices: 120199--120241 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
120189 TAGCACTATA
*
120199 GGGAATATAGAAAG-ATAT
1 GGGAATATAGAAAGCAGAT
*
120217 GGGAAT-TAGGAAGCAGAT
1 GGGAATATAGAAAGCAGAT
120235 GGGAATA
1 GGGAATA
120242 CCATAAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (19 bp):
GGGAATATAGAAAGCAGAT
Left flanking sequence: Indices 119699 -- 120198
AACGGCACTCCGGTCAGGAGGGCGGAGCCCCCTAAAGGGTGAAGAGCGAAGCAAAGGTCTATCCT
GTAGACTGCTTTCTTAGTTCTCAAAGCTGCTTTCTCTTTCTGGCTGCTATATGTCTAAACAGGAG
AGGGTTTATGAACCTTACAGAGACACTGCACTAGATGCGCATGAGGGAATGAATTGAGACTACCA
CACACGAATCCCATACCTCATGATGTAGTTGCTTATCCTTGGTAGGACGTATTGCGATAGAGCTT
TCTCTAGTAGCAGTAGAGAAACTGCACTGTGGAAGTTCAACGGAGAGAATTTGTTGATCTTAATG
ATGAGAGTATGAAAGTTAGATCGGGTCTATGCCTCAGCATATTCTCATCGGGTTAGTCTAAAAAA
GAGGAGTTGAAAAGCTCTAGTCTTTACGCCCTTCGTTCAAAATTCCGGTTAAAAGACTTAAGAGC
AAAGTTCGAAAGAAAGAAGGAGAGAGGTAATGGTATAGCACTATA
Right flanking sequence: Indices 120242 -- 120741
CCATAAGAGAGATCAACTAGAGCTTATGCCAAGGATGACTTTCCAAAGACTAAAAGTCTATTACT
CATTTTGTTTTGAAAAGGATATCCCTAAGAGGATTGCTAGTTAGCCACCTTCCATATACAACCGG
TGGAATAACCAGCTTCAGGAATTGACTCTGCTACTCTTTCATCCAAGCCCAGTTCAAGCTCTCAG
ATATAGGCCTCGTCTTGGTCGACTATCACCAAACAAGGTCAGAATTTCCGGTGTTAAGCATGTAG
CTAGACTTTCTTTTTTCAAGAGATTCTGTAAGCAAAGAAGGGAATCCCTAGTCAAGGAAGTAAGC
TAAGAAGGTAATTGCTTTGAAATGCCTAGTTCTTAGCTCTTAGCGAGAATAGGTTCGTAGCCAAG
GTAGGGCCGAATCCACTTAAGTAAAGCTTCCCAGCAGTCAACCCAGCATTGAGTGAAGTTCCTTC
CTTCCCTCAGCCCTTTCCATTCTTCTTTCCATGTAAGGTAATTCC
Found at i:122349 original size:42 final size:42
Alignment explanation
Indices: 122297--122378 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
122287 GTCACCGGGG
*
122297 AAGACTGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
122339 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
1 AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGA
122379 CTCAAAACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.21, G:0.30, T:0.11
Consensus pattern (42 bp):
AAGAATGCGGAGCAGAAGCAAAACAGAATGGTTCCGCCGAGT
Left flanking sequence: Indices 121797 -- 122296
ACTTGTCGTCTAGTTTCAGGAAATGTTCGGAATAAAGAACTTACACTATCGCAACGCATCGCTCT
CCGAAAATGGAGAATGAAGAAAAAATCTATTAAGAAAAAGATGTATCCGAGAAAAAATCGTAACA
GTTACATACAATTACGAACTACACGAAAGTTGTCCCTTTTTCATGGGAATTTACCCATCACAAAG
ATGCACAGAAGAACAAAACGAACTTCATATATCCCTTTTCTACTCAATCCAGAAACAAGATTGGA
CGTTATTCTGGTTCGTCTACATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATC
GAAAAGTGTGTGTGAATAATGGAATAGTAAACATTAGTCATTTTAAAGTTTCCCACGGTGATATA
ATATCTTTTCAAGAAAATTACGCGAGAACCCGCGGTGAAGAAATAAGGAAATTTTTCTATATCAA
AATATCAGTTGAAAAAATCATAGGCAAATTAAGGGGTCACCGGGG
Right flanking sequence: Indices 122379 -- 122878
CTCAAAACTAAGAAGGGATGCCGCCTACTACTAAAAGACCGGTTTTTGCAAAAGTTACATTCTTC
TATGCAAGAACAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGACGCTGAGCACAACAGAATGA
AGAGGAATTTTTCTCACTCCGTGACCTTATTCTTATCGAAGAAGAGAAGAATCAAAAGGATAGAA
CTACCTACTCATTATTCGGAGGTCAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAA
CATAGATCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAAGG
GACGTGGCCAAAACACATAAAGATCGGCGTAGTCGCTCATAGGGACATATCTATCCGGATAGAGA
TAAGGACAGGGATCCATCTAGAAAAAATATTGAACCGGTTTCATTTTTTTTTTTCTTGATTCTGA
TTGATTGCCTTTTTTTGACGACAAGTTTTAAATCTTAATGCAGGC
Found at i:141185 original size:42 final size:42
Alignment explanation
Indices: 141126--141209 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
141116 CCAAAAAAGA
141126 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
141168 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
141210 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 140626 -- 141125
AGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTAT
TCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 141210 -- 141709
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:144165 original size:18 final size:18
Alignment explanation
Indices: 144125--144167 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
144115 CAGAACCTAC
144125 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
144144 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
144161 CATAGTC
1 CATAGTC
144168 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 143625 -- 144124
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 144168 -- 144667
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:145549 original size:32 final size:32
Alignment explanation
Indices: 145512--145660 Score: 289
Period size: 32 Copynumber: 4.6 Consensus size: 32
145502 ACGCTCCGCT
145512 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145544 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145576 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145608 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
145640 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
145661 CAAATAGGAA
Statistics
Matches: 116, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 106 0.91
33 10 0.09
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 145012 -- 145511
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 145661 -- 146160
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAAGAAAATGGGTCATCCATGAATTCCTTCATTGAGTCACTAGACG
GGAGAGAGTGAGTTGACCGAGGGTCATTGATGGAACAAGGTAGCCGAAGGGAAACTTTTGGCTGG
ATCGAATCTGCCTCGTTATTTCGTAAAAAAGTGAGTCTGTCCTAC
Found at i:155397 original size:16 final size:17
Alignment explanation
Indices: 155365--155397 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
155355 AAGAGAGGGT
*
155365 GAAATAAATGCATTCTG
1 GAAATAAATGAATTCTG
155382 GAAATAAA-GAATTCTG
1 GAAATAAATGAATTCTG
155398 CTTCCCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (17 bp):
GAAATAAATGAATTCTG
Left flanking sequence: Indices 154865 -- 155364
CAGTATTGTTTGCATCATTAAATGAAGTATATTATACCTATGGGCTGCCAACAGAGGCAATTAGC
CTCTTTGTTGATGACTAGGATAGAGAAATCTATAGTTATAGATCCTCATCCTGGATTAATTGTCT
GTTCACATACCTATCGTGAACCTTTCCCTTCTTTTTCTTCCATTGACTTTCTCATAACTTGTGTT
ATGGACCTTCTTTTAGAGTATGCTTATCCACGCTTGGGAAAAGATTCATACGCTAAATTCATAAT
CATTGTGAGTATGAAGGTCTCAGATAAAGATGATATTGGATTTTCTCTTGGAAGTGCAATCGTTT
TGACTCTGGAAGATGGGAGTCTCATTCCTAAGGGCAATGTATATTCAAGCATTCAGAGTTTGGTA
CTCTCCCATGCTGATAAGTATGAAAACTTCAGAGTGACTGCTGTCACCCTCAAAATCTTTATTGA
GGGGAAAGTCTAAAATGTGTCCTCTCTCTCATTAGAAGAGAGGGT
Right flanking sequence: Indices 155398 -- 155897
CTTCCCTCTTTTCTTTAAAGATGTCGAGCATATAAATCCTCGCCCTGTAGGGCTACGAAATCGAT
CGTATCCAACACGTATCACTTCTCTAAAAAACAGTGCGAAAGGTATGACTCCGTTCTTGGTTGCT
GATACAGAGACAATCCTCTACGATGGGATGGATTTAGATCCTATTTCTCGGGATAAGTTTTTCAT
GGGATTAGATCCAACTCCCTTTGACAAAGATAAAAAAGTAGAAGTTCATTCACCTTTTGCTATAG
GCGTTATGATTGTTCGTCCGTATGTGCCTGTAAATGAGAGTAATATCGATTACTACTACAGTTCT
GATTATCCTGATAAGATCTTCCCAACCCATATGGAAAGAAGTACAAAGTTACTGTCGGACTTTAT
TCGCCGAATAATCTCTATTATTAAGATGAATCCTGAGATTCAGACTGTCTACTTCCACAACTTTT
CTCGCTTCGATGGAATTCTCATTCTGAGGCACCTCGTGCTGCATA
Found at i:168692 original size:18 final size:18
Alignment explanation
Indices: 168669--168706 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
168659 AAGACAGTTC
*
168669 TTTTCTATTATATTAGTA
1 TTTTCTATTAGATTAGTA
168687 TTTTCTATTAGATTAGTA
1 TTTTCTATTAGATTAGTA
168705 TT
1 TT
168707 AGTTAGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTTCTATTAGATTAGTA
Left flanking sequence: Indices 168169 -- 168668
TCGAAGCCATTGGATCCTTTCCATAATTCTTTAAGTCCCATAGGTTTAATCCTGTAGAATCTGAC
CCACTTTCTCATTGAGCGAAGGGTACGAAATAAATCCGATTGATTTTTCGATCAAAAGTACTATG
TAAAATCCTCGGTTTTTCCTCTTCCTCTATCCCTATCCCATAGATAGGTACAGCGTTTGAATCAA
TAGAGAACCTTTTCTTCTGCATGAATCGATATTATTACATTCCAATTCCTTTCCGATACCTCCCA
AGGAAAATCCCGAATTGGATCATTCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTGTG
CACTCTTCGAATAGGAATCCATTTTCTGACAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAG
ATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGCTCCGATCGATTGCGTAAAGCC
CGCGGTAGCAAGAGAACCGGGGAAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 168707 -- 169206
AGTTAGTGATCCCGGCTCAGTGAGTCCCTTCTTCCGTGATGAACTGTTGGCACCAGCCCGACATT
TTGTCTCTGTGGACCGAGGAGAAGGGGGGCTCGTCGGGAAGAGGATTGTACGATGAGAGAAGCAA
GGTGATTTATCATTTTCAAATATACAACACAGATTCTGGCAATGCAATGTAGTTGGACTCTCATG
TCGATCCGAATGGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGAT
AGCAAGTTCAAAATTCTGTCTCGGTAGGACATGTATTTCTATTACTATTACTATGAAATTCATAA
ATGAAGTGGTTAATGGTGGGGTTACCATTATCTTTTTTGGAGTGACGAATGCGGTATGTGTTCCT
AAGAAAAGCCATTTTTCCATTTTTCGGGGTTTCAAGGGGGCGTGGAAACACATAAGAACTCTTGA
ATGGAAATGGAAAAGAGATGGATTTTCCTTTGGAAAGGGTAAGAT
Found at i:173136 original size:40 final size:40
Alignment explanation
Indices: 173081--173161 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
173071 AAGCCCTCTG
*
173081 CAGCAACGCAAAGGCTTGAG-TCCTAACTCAACCTAATCTA
1 CAGCAACGCAAAGGCTTGAGTTAC-AACTCAACCTAATCTA
173121 CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
1 CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
173161 C
1 C
173162 GACTAGCAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 37 0.95
41 2 0.05
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (40 bp):
CAGCAACGCAAAGGCTTGAGTTACAACTCAACCTAATCTA
Left flanking sequence: Indices 172581 -- 173080
TAAGCTAGCAGCACAGAAGAACAGGATGAGCAGGATTTACAACAGGAGAGTCAGGCACAGACCTT
TGACAGAGGGAGACCTGGTGCTGAGAAGAACAGCAGCGGTAGGAAAGGGAAATGTACATGGAAAA
TTCACTGCCAACTGGGAAGGCCCCTACCAGATCTGCGAGCAGGTGGCACCAGGGTCATACAAGCT
CATGACTGTAGAAGGAGAACCACTGAAAAACAGCTTTAATGCAGATGTCCTGAAAAAGTACTTCG
TTTAAATATTGTCATTAGCAATATGCTTTGTAAGAAAGGCCAGTAGAGCCCAAGTATGAAATAAA
AGAACTCTTAAAGTTCTTATTATGAATTATTCGCACTAACATTTGCTCTTATCCGTGCACAACAC
AATTAGATGACGTTAATAGTCCTTTAACAAAAAAGGGGCCCAAAACGCGTCAATAAGCGCAGAAA
AAAAAAAGCAGAGGGAGGAGCATAGAGCCCAGCCAAAGCCCTCTG
Right flanking sequence: Indices 173162 -- 173661
GACTAGCAAGACACGAAGAACGACTGGCAAGGTTGAAGCATAAAGCTTAGCCCAAGCCCACAACA
GTCGAGGTAAAGACTGAGACCCGAGCTCAGTCAAGCCATATAACACGGTAAAGCTAGGCAAAGAT
CTAGCTAAAGCCAAACAGTCGCAAGGCGGGACATACAGCTCAATAAAGGCTGAAACACGAGGGCA
GCGGAAGTGTTTGTTAAAGGACTTACACACACGGAAGGCAAGTCTAAACAAGGCTATAACCTTGA
AAACCAATGAAACAGGTACAGCCAGTTACAGCAAAATGCGGCAGGTAATACTAAAATACCAAAAG
TTATCAACAAGGCTGCAACAGCTGACTACACCAACACCTCATACAGGAGAAATCGAAGCACAAGT
CTCTGTAGAGCCACAGGAAGAGCTAGGAGATAGCCGCCAAAACCATTAATCCTTGTTCTCAAAAG
GAGGAATGGGGAGCTCGCTAGGATGAACGTTTGCAACAATATAGT
Found at i:189199 original size:54 final size:54
Alignment explanation
Indices: 189136--189251 Score: 189
Period size: 54 Copynumber: 2.1 Consensus size: 54
189126 GGTCGGAGCA
189136 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGG-AGACGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCA-ACGGATGCTGCTGCT
* * *
189190 TCCGGGGATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCT
1 TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
189244 TCCGGGGA
1 TCCGGGGA
189252 AAGAAATCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.22
Consensus pattern (54 bp):
TCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGCAACGGATGCTGCTGCT
Left flanking sequence: Indices 188636 -- 189135
ACAAAGCAAAGATGGAATCGGGATAAAGGGGGGAACAAAGTCAAGTATAAGCAAGCATATCATAT
ATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAAGTTG
GTTTAATGATTATTATTATGGTAAATTAGTATATCAAGATCTCAATCTGAGATCTTATGTTGGTT
CAATACGTCCACCTACGAGACTTACCTTTGGCTCTCGGCCCGGTAGGTGTATTATTATACATTGT
CAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTTTTTTTATCCTATTAATTTCTTGTTTAGT
TCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGATTTGGATGGAGTTTTTCATTTATTCTTT
CTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCATGTAGTATTTAGGCGCTTGGGATGGGCT
TTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGGTCGGAGCA
Right flanking sequence: Indices 189252 -- 189751
AAGAAATCCTCCCGTGGAGGACCTGGTCCGCCAGGCCAGGATCAAGTTCGAAAGGGCGGGGGAGC
TGACCAAAAAGGCGGAGGAGCTGACCCAAAAGGCGGAGGAGCTGACCCAAAGGGCACAAATCCTC
CAAAACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGGTTATGTATTTTAGC
CGAAAAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCTTATAATAGACAACC
TTTTTAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCGCGAAATCCGTCATT
GGCGAAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGCTATCGCATTGTTTG
CCCTAATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTTTTTTTCATTTTTGT
TTTAAAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACT
Found at i:189364 original size:21 final size:21
Alignment explanation
Indices: 189306--189367 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
189296 AGTTCGAAAG
* *
189306 GGCGGGGGAGCTGACCAAAAA
1 GGCGGAGGAGCTGACCCAAAA
189327 GGCGGAGGAGCTGACCCAAAA
1 GGCGGAGGAGCTGACCCAAAA
189348 GGCGGAGGAGCTGACCCAAA
1 GGCGGAGGAGCTGACCCAAA
189368 GGGCACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.40, T:0.05
Consensus pattern (21 bp):
GGCGGAGGAGCTGACCCAAAA
Left flanking sequence: Indices 188806 -- 189305
CTCAATCTGAGATCTTATGTTGGTTCAATACGTCCACCTACGAGACTTACCTTTGGCTCTCGGCC
CGGTAGGTGTATTATTATACATTGTCAAAAACGAACGTTCATTAATTTCTTTCTTAAATTTTTTT
TTATCCTATTAATTTCTTGTTTAGTTCTTGCTGTTGTCTCTTGCCTGAGTTTACTTCTTGGATTT
GGATGGAGTTTTTCATTTATTCTTTCTAAAATCGCCTTCATGATACTAGGCTCGGGGCTCCATGT
AGTATTTAGGCGCTTGGGATGGGCTTTCCCTGCCTTGCTTACATCGTGCTCCATGTATATGGTCG
GAGCATCCGGGGATGCCCCCTTCGACTTGAATAATCCACCGGAGACGGATGCTGCTGCTTCCGGG
GATGCGCCTTTCGACTTGAATAATCCACCGGCACCGGATGCTGCTGCTTCCGGGGAAAGAAATCC
TCCCGTGGAGGACCTGGTCCGCCAGGCCAGGATCAAGTTCGAAAG
Right flanking sequence: Indices 189368 -- 189867
GGGCACAAATCCTCCAAAACTACAGCTCCCGGAAGCAGCGGGAGAAAGGGAATCGCCTTTCTCGG
TTATGTATTTTAGCCGAAAAGCGCTTTAAATTGATCAAACGAAAAAACGAGAAATTAAAGAGGCT
TATAATAGACAACCTTTTTAAGTAATTGTTTTTTCGTTTTTAGTTCCTTGATCCATTCCGTGGCG
CGAAATCCGTCATTGGCGAAACAATTATTTGGTTATGCTATTTTGGGCTTTGCTCTAACCGAAGC
TATCGCATTGTTTGCCCTAATGATGGCCTTTTTGATTTCATTCGTATTCCGATTCCGGCTTTCTT
TTTTTCATTTTTGTTTTAAAAAGAGAGGGGCCAAAGTAAGACAGTGAAAGAGTGTAACTTCCGCT
TTCGCGTACTGAGAGGCAGGCCCTTGTATCATGGTTAGTTTTTTGCTTGCTTCAATGGTAAGGGG
AAGGGGAGAGGTGAGGAGGGCCCCCTTCAAGCGGACTACTTTACT
Found at i:240908 original size:24 final size:24
Alignment explanation
Indices: 240880--240986 Score: 91
Period size: 21 Copynumber: 4.7 Consensus size: 24
240870 ACAAAAAAGA
240880 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
**
240904 TTTGTCTAAGTTGCTTCGTTTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* * *
240928 TTTGTCCAAGT---TGCGTCTCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
* **
240949 TTTGTCCAAGTTGCTTC---TCTT
1 TTTGTCTAAGTCACTTCGTTTCTT
*
240970 TTTGTCTAACTCACTTC
1 TTTGTCTAAGTCACTTC
240987 CTTTTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
21 36 0.51
24 34 0.49
ACGTcount: A:0.11, C:0.22, G:0.14, T:0.52
Consensus pattern (24 bp):
TTTGTCTAAGTCACTTCGTTTCTT
Left flanking sequence: Indices 240380 -- 240879
GTTTCGGCTTTAGATTCGAGAGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAAC
GCTTAGAGAGCGCTCCCCCTCTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTG
GAGCCCTAGTGGGGCTTCTCTTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATT
CAAAGGGATCAAATAGGAAACGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCA
ACATTTCTCGAATTTTAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAA
CCGAGAGATTCATGAATCGGGATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAAT
TTCCAGGAACATTTCGTTTCTGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 240987 -- 241486
CTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCATTTATGAATTG
AAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTT
GAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAAATTCTTGATCA
ATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCAT
ACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGA
TCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATA
AAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTC
CCTTTTTCTATGGAAAAGGCCCGTATCAATAATTATGATTTTACG
Found at i:240950 original size:21 final size:21
Alignment explanation
Indices: 240900--240975 Score: 98
Period size: 21 Copynumber: 3.5 Consensus size: 21
240890 TCACTTCGTT
* *
240900 TCTTTTTGTCTAAGTTGCTTCGTT
1 TCTTTTTGTCCAAGTTG---CGTC
240924 TCTTTTTGTCCAAGTTGCGTC
1 TCTTTTTGTCCAAGTTGCGTC
*
240945 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTGCGTC
240966 TCTTTTTGTC
1 TCTTTTTGTC
240976 TAACTCACTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.67
24 16 0.33
ACGTcount: A:0.08, C:0.21, G:0.16, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTGCGTC
Left flanking sequence: Indices 240400 -- 240899
AGTTGGGATTGAGCTTTCTTTTCAGTAAAGCCTCGCATTACTAACGCTTAGAGAGCGCTCCCCCT
CTCTGACTGGTAATACACTCGGAATAAATCAGGTGAGGCGAGTTGGAGCCCTAGTGGGGCTTCTC
TTCATTCCCCAATGTAGGATGGATCGCAGCTTCGAATATGGAATTCAAAGGGATCAAATAGGAAA
CGATACTTTGAATCATAGAACTATAAGGAAATATACGATCAACCAACATTTCTCGAATTTTAAAA
AGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTCTTTCTCGAACCGAGAGATTCATGAATCGG
GATCCTGATGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCGTTTC
TGAGCAGAAGAGTCGTTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATT
GGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCGTT
Right flanking sequence: Indices 240976 -- 241475
TAACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGAATATCCCCAGTAATAGGTCCGAGATCCGCA
TTTATGAATTGAAAGGTCCGAATGATCAACTCTACAATCCGTTGTTAGAATCAATAGGTCTTCAA
ATCGTTCATTTGAAAAAATGGAAAGCCTTCTTATTGGATGATCATGATACTTTCCAAAAATCGAA
ATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTG
ACTCATTCCATACTAGAAATAATCACGGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATG
ATATCCCACGATCAAAACAATTGGCTGAATCCCGTAAAACCATTTCATAGAAGTTCATTGATATC
TTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTA
ACAAAAGATTCCCTTTTTCTATGGAAAAGGCCCGTATCAATAATT
Found at i:245853 original size:33 final size:33
Alignment explanation
Indices: 245811--245930 Score: 231
Period size: 33 Copynumber: 3.6 Consensus size: 33
245801 GAGACGTTCC
245811 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
245844 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
245877 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
1 CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
*
245910 CCTCTCCCTTTGGTCGAGCAA
1 CCTCTCCCGTTGGTCGAGCAA
245931 GTAAACTCCC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (33 bp):
CCTCTCCCGTTGGTCGAGCAACGCAATTAAATA
Left flanking sequence: Indices 245311 -- 245810
CTACACCTCGTTTCACCCTCCGAAGCATATAGATCTACCCGATCGATCAAGACTCGAACCGAACT
CGCTCATCCTTTTTGGACCCTTCGCCCGCTTAGAAGTGGATTCGAACCACTGACACAAGGATTTT
CAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAGTCTGTTTTCTTCATCGA
ATAGCGCCCTACACTTTCTTCTTAAGTCAGAATAAAGAGAAAATGGAAGTTTCAGTTAAGGGCCC
TTTTCGCTTTTTAAGCTTTCTTCTCTTATGATTTTTAATAAGAAGAAGAATTTTAGATAAGGAAA
TGACTGTAAGAAGAATCTTATTTCTAATTGAATTACAGTAATATTAATCTATGAAAGAGCTTGCT
CGCAGCTTATGGTTGGCCTTTCCTTCTCTTATGATTTAAAAGCAGAGTCAAAGGGAATAAAGAGA
ATGATAATGAAATGACTGTAAGAATCTTCATTAAAGAGACGTTCC
Right flanking sequence: Indices 245931 -- 246430
GTAAACTCCCTTGAACCTAGCCCTCGGGGATCGGCTCTTTCTCTTCGAATTCTTTTCTAATTCAA
TTACTGTAAGTTTATTCAATTCAATAAGCTCTTTTTAAGCCTCCGGTCTCGCAATTAAATAAGAC
CTTTGGCTTCTCTTTTGCTTGCTTTTCTTCTTCTTTTTCTCTTTTCATAAATGTGCGCATATATA
GGCCTATATCCCCTTTCTTTAAGAAAGGTTTCCAAACCTATTCACTCCCTACACCTTTTAACTAA
AGAACTCGTTAGCATGTGAGAGGGATGCAATTGCTTATGCGGCTGCATCTCTTAGCTCAAAGTGT
GCGTCAACCCCTTCTGGCAGTGGCATAAAGTGCCAGCCTCCGCTTCCTCAGCTTGCTAAAAGACA
GCTTCCGCGGAAGATTCGTTCCTTAAGAACATGCATAGCATTGATTTGAAACAAAGTGCAGTTAA
AGGCTATTAAATATGGCTTAAAGCTTAGTTAATAAGAAAAAGATC
Found at i:251512 original size:12 final size:12
Alignment explanation
Indices: 251495--251520 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
251485 AGAACAACTC
251495 CTGTACAGCCTT
1 CTGTACAGCCTT
251507 CTGTACAGCCTT
1 CTGTACAGCCTT
251519 CT
1 CT
251521 CCTTATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (12 bp):
CTGTACAGCCTT
Left flanking sequence: Indices 250995 -- 251494
ATCGAACTAAGATGGATCGGGCTGTTGGCTCAGAGAAGGTTTGCTCGGGGAAGGAATAACAAGAA
GTTTCTAAGGTAATGCCAATTCACTGACTTGGAACAAGTAAGGAAAAAACAGGCTCTTTCTAAGG
AGGTGGTTATAGAAAGAGATCAGAGTAGAGGTAGTAAAGCTAAGAGCTAGAAAGTAGCAACCCGT
AAAAGCTAGCCAAAAGGCATATGAGGGAGGGGGTTTGCTCGGCTCCGCTCGGAGAGGGAATCCAT
TCCAAAACCAAGGTTGGAGGTTAGGCCTAGAGCAACAAAGCAGATGGTTCGACAACTGATGATGA
GACAACGGACGACCGACCACTTATTGTGATGTATCCCTCCCCTTTGGTATGTCCTCTTCTGTAAA
GGTCAGCGCATGTTTGGTCGTAATCTGTTCGACCAGACCACGTCTTGCAGCTCTTCTGGCGTCAG
GGTTGCGGGAACCTGTGCTTCTTGGTTGAAATTGAAGAACAACTC
Right flanking sequence: Indices 251521 -- 252020
CCTTATGCTTTGGAGACGTTCTCAGCAACTCCAAGATAGATATGTGGGCTGCTAACTTACTGAGA
TGACCGAGAAGATCATACTCCGGCTGTGTGGCTACCTTTTCCGCTTGATCGGCAACCCTTTCTTC
TGGATTCTTGGGTCAGGTCGTGCATAGATCCTTCCCGTCTTGCTGACAGGATTGATTTCGTGACC
AGCTTTTGGCGATTACAGGTGCAATCGTAGCTTCCTTCGGTTCTGGAGGTTGCTTTCTCACGGCA
AACCTCTCGACCTTACTCTCTTGAGTAAGCAAGTCAACTACCTTTAGAGATGGGAGACGACTAAC
TAAGCTAATCATTATGTCCCTTTCTTCTTATTCCTCCCCAACCCTCGGATTGCTTCTCTCACTTT
AAAGACGTTAGCAAGAAGAGCTCTGATTCAACATAGAGCCTGGTCTATTGCTTTTCGTCTGGTAT
GAATGAATTCCTAAGGTTAGTCGATTTCTTCACATTCTTAATAGC
Found at i:263081 original size:42 final size:42
Alignment explanation
Indices: 263022--263105 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
263012 CCAAAAAAGA
263022 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
263064 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
1 GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
263106 ATAGTAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (42 bp):
GCTGTCAATGCATTCCTACCCTCTTACCTCTTTGTGTAGATC
Left flanking sequence: Indices 262522 -- 263021
AGTGGTCTAATCCTCTCCAATTTCGTAAGGAAGTATGAAAAGTGGTCCCCTAGCCTTTATCTTAT
TCTTCGCCTAAAAATGCTTTTTTCTATCAGCACTTCAAGCAGTCTCTCTTCGTCCAGTCTTTCTA
TTCTTGTCAATCTTGGAAGTCGTGTAAGCAAACCATTGGTCCATTACCAAAGCAGTTCAATCCGT
AGAGGAGAATTGGCTTCTAGGAGAATGAGCTTCACTTTCTTTAGCACTTGACTTACCTTCTAATT
CCATATCGGAGAATGGCCTTCTAGGCTTCTTTTTTGAGTAGAGCGAGGGAAGAGTTTACCGGGTA
TGGAACCATCTATCTCCATAGCCTTTAGTCCGGGGCGACTTGCCCTTCTTTCCTTTATTTGTTGG
CTCATTCGAAGCAAGGAATTTGCTTTCTTCTAAGGAATTTGCTTTTAGTAGCACTTCCAATCTTT
CTCTCAGTTAATTACGTACGTATCCTATTCTATTTCCAAAAAAGA
Right flanking sequence: Indices 263106 -- 263605
ATAGTAGGATAAAGAAGAGTGTTCTTTGGTATACCTTCAAGCATCCTCACTTGTTCTTTGGTATA
CCTTCAAGCATCCGAAGGACTTTCATTTCCCCCGTACAAGCAAGAGTTGGCTGGTAAAAAGGTAG
TTCCCGCTGTTTTGTCAGCGGATCTTACGATCTCTCATAGAAAGGTAAAGCAGTCTTAAAGCTTG
TTTCAACTTTCTATAAATTGCTGCTTTTGCTTCTAGCTAGTTCAGTGGATAAGATGGCTGCGCTC
CAGCTCACTCCTGACTCTTAAAAAGGGAGGATTCACGGGTTTCAATAGATAATATCGTAAGTAAG
AAAGAACGTTTTCACTAATTACTTTCATAGAGAGAGACCCTCCCCACCCCAGTATAATGTCCTCT
CGAAAATCGGATACCTTTTCGTTTTCATTTCTCCCATTTCTTGCGTCTGTCTCGAGGATCTGAAA
GAGCTCGAACGAATGTGAGAGGAGCGAAAAGCGTTTTTCGTTTTT
Found at i:266061 original size:18 final size:18
Alignment explanation
Indices: 266021--266063 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
266011 CAGAACCTAC
266021 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
266040 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
266057 CATAGTC
1 CATAGTC
266064 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 265521 -- 266020
CCTTGAGTCATCAAAGCCTTTCTGACTTGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAA
AAGGTAGTTTCTACTTGCTTACTTGTTAGAGTAAGGCGAAACTCTCGTCGTAGTTTGGCGATCTA
AGGTTTGAAGATCTTAGCCCTTAAAGGCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGA
CTGATCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGC
TGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCATCCTTACTT
GTTCAAGTAAGTGAATTGGCATTACCTTACTCATTCAAGTAAGCAAGTAGTCGAGTTCCTTCGCC
TTACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGAGCTTGAGCTGATGTCAGCTCAAGGGGCC
TTTAGTCTTTTGATTAGAGTAGAGGTTTCAGCAAGCAGAACCTAC
Right flanking sequence: Indices 266064 -- 266563
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAA
CACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTT
TGAATGGAAGCCCCAGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGT
CGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGT
GAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACG
Found at i:267445 original size:32 final size:32
Alignment explanation
Indices: 267408--267556 Score: 289
Period size: 32 Copynumber: 4.6 Consensus size: 32
267398 ACGCTCCGCT
267408 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267440 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267472 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267504 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
1 CCATACTTGTTCCAAGTAAGTGAATTGCATTA
267536 CCATACTTGTATCCAAGTAAG
1 CCATACTTGT-TCCAAGTAAG
267557 CAAATAGGAA
Statistics
Matches: 116, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 106 0.91
33 10 0.09
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (32 bp):
CCATACTTGTTCCAAGTAAGTGAATTGCATTA
Left flanking sequence: Indices 266908 -- 267407
GGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAG
GGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGG
TTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGG
GTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTAT
GGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAG
AACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACTA
CTTTCACTTTCCATAACCAAAATGAAAGAAAGTCAACGCTCCGCT
Right flanking sequence: Indices 267557 -- 268056
CAAATAGGAATTACCATACTCTATCTTCTAAGTGAATTGGCATTACCTGCAATTGCGGTCAGTCT
CGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGCAATTACTACCACTTCTACCCCGGCC
AAGCAACCAAAGCCGGGGACCCAGGTGAGAATAGTGAAAGAGAGAGAAGAAGCGGGGTAGAGTAA
TTGGAATAACTCATCAGGTTCATGCCCTGAAAATTGCAGGTTCGATTCCTGCCCCCGCCTAAGAA
TAAGAACTGATTTTTCATTTTAGGTATAGATGGTACTGGACAAGCTCTTAGGGAATAATCTCTTT
CTTATTTCCGGACTTTTTCCAAGAAAATGGGTCATCCATGAATTCCTTCATTGAGTCACTAGACG
GGAGAGAGTGAGTTGACCGAGGGTCATTGATGGAACAAGGTAGCCGAAGGGAAACTTTTGGCTGG
ATCGAATCTGCCTCGTTATTTCGTAAAAAAGTGAGTCTGTCCTAC
Found at i:277293 original size:16 final size:17
Alignment explanation
Indices: 277261--277293 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
277251 AAGAGAGGGT
*
277261 GAAATAAATGCATTCTG
1 GAAATAAATGAATTCTG
277278 GAAATAAA-GAATTCTG
1 GAAATAAATGAATTCTG
277294 CTTCCCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (17 bp):
GAAATAAATGAATTCTG
Left flanking sequence: Indices 276761 -- 277260
CAGTATTGTTTGCATCATTAAATGAAGTATATTATACCTATGGGCTGCCAACAGAGGCAATTAGC
CTCTTTGTTGATGACTAGGATAGAGAAATCTATAGTTATAGATCCTCATCCTGGATTAATTGTCT
GTTCACATACCTATCGTGAACCTTTCCCTTCTTTTTCTTCCATTGACTTTCTCATAACTTGTGTT
ATGGACCTTCTTTTAGAGTATGCTTATCCACGCTTGGGAAAAGATTCATACGCTAAATTCATAAT
CATTGTGAGTATGAAGGTCTCAGATAAAGATGATATTGGATTTTCTCTTGGAAGTGCAATCGTTT
TGACTCTGGAAGATGGGAGTCTCATTCCTAAGGGCAATGTATATTCAAGCATTCAGAGTTTGGTA
CTCTCCCATGCTGATAAGTATGAAAACTTCAGAGTGACTGCTGTCACCCTCAAAATCTTTATTGA
GGGGAAAGTCTAAAATGTGTCCTCTCTCTCATTAGAAGAGAGGGT
Right flanking sequence: Indices 277294 -- 277793
CTTCCCTCTTTTCTTTAAAGATGTCGAGCATATAAATCCTCGCCCTGTAGGGCTACGAAATCGAT
CGTATCCAACACGTATCACTTCTCTAAAAAACAGTGCGAAAGGTATGACTCCGTTCTTGGTTGCT
GATACAGAGACAATCCTCTACGATGGGATGGATTTAGATCCTATTTCTCGGGATAAGTTTTTCAT
GGGATTAGATCCAACTCCCTTTGACAAAGATAAAAAAGTAGAAGTTCATTCACCTTTTGCTATAG
GCGTTATGATTGTTCGTCCGTATGTGCCTGTAAATGAGAGTAATATCGATTACTACTACAGTTCT
GATTATCCTGATAAGATCTTCCCAACCCATATGGAAAGAAGTACAAAGTTACTGTCGGACTTTAT
TCGCCGAATAATCTCTATTATTAAGATGAATCCTGAGATTCAGACTGTCTACTTCCACAACTTTT
CTCGCTTCGATGGAATTCTCATTCTGAGGCACCTCGTGCTGCATA
Found at i:290108 original size:39 final size:39
Alignment explanation
Indices: 290053--290128 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
290043 CCCATCCTTC
*
290053 AATATCATGATTGGGTCAACCAGGCCAGATCATGAGTCA
1 AATATCATGATCGGGTCAACCAGGCCAGATCATGAGTCA
*
290092 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGT
1 AATATCATGATCGGGTCAACCAGGCCAGATCATGAGT
290129 GAATAGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCAACCAGGCCAGATCATGAGTCA
Left flanking sequence: Indices 289553 -- 290052
GGTTACTTTAGCCTGTTGTACTGGAGTGCTTCATCGTCAAAAGAACAACAATGGGTTGTAGCATT
TTATATTGATTTGTCTAGAGGATGTAAAAGAGGGCTTTCTCGTCTAAAGGCAGGGGTGAGCTTTC
TCACTATAGAATTCGCACTACGAACGAAAGACCAACGAGGATTCAGGAGGAGAAGGAGTAGGAGC
TAGCTTTCATTGAAGTAGAGGCACGAAGTAGCGAAGAATTTCGATTAAAAGAAAGGGAAAAGTGT
GAAGAACTCAAATTAAAAATCCTTTCCATCCCACGAATCCAAAACTCATTTTTGAAAGCCGGGGT
TACCTCCGGTAACCACGCCACTGATTTCTCCAACGAAAGCAATCGACATGATGATTCCTAGCGAA
AACTCGCGAAAAGGAATCAAGCCGGAAGCTTCGATTGAAGAGATTCAATCTTGCACCATCTTCCA
CTTTTATCGAGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 290129 -- 290628
GAATAGAAAATCGAAAACGTACATAGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTC
TACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAG
GGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCT
AAAAGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTCACTACAT
TTATGCTAAGTCTGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCG
AACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGG
TTGGTCTAGTAATTATAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTAAAAA
ATAGCTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTG
Found at i:292205 original size:32 final size:32
Alignment explanation
Indices: 292164--292264 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
292154 ATGGAATTCT
*
292164 CCTTACTCTAAGGAGTAAGTGAGTCTAAACTA
1 CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
292196 CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
1 CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
292228 CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
1 CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
292260 CCTTA
1 CCTTA
292265 AAGGGAAGCC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (32 bp):
CCTTACTCTAACGAGTAAGTGAGTCTAAACTA
Left flanking sequence: Indices 291664 -- 292163
CGCTGGTTAAAAAACAATCATTTGATTTTGTTTCTTGCTCTCTCTTAGCAGCGGGAAAGGAGTCT
ATCTATCTGCCTAGCTTTGGTAGATTTCCCTCAACGCAATCTAAAGAAATTCTCCAAATCCCTTT
TTGGATAAGTCCGACGACTCAGCAGCAGTGCGGAATTGACTTTCTCGTCCGGTGGATCTGATCTA
TAGTTAGGGGACAATACATACCAAAAGGCTCGAAGAAAGGACGATAAGAAAGCAGAATCAAAAAA
AGGTATGTAATCGCTAAAGCGAAGATTTTGGATTGATTTGAACCTGTAGCCAAGCCAAGGTGAAG
GGTGGGTCTAGGCTTCGGAAGCATAACAGAAATAGCCTAAATCTTCCTCAGAAAGGAGCCAAAAA
GCATAAACTAGGCTAGGCCTTCAGGGCGACTCGCTTAGCATGGTGAGTGAATCAGACCGCAGTGA
CACAGTCGTCCAAAGCTTTTGAACCCGAAAAAAAGATGGAATTCT
Right flanking sequence: Indices 292265 -- 292764
AAGGGAAGCCAATCTTCATAAAAGAAAGACGCCGGCCAGCCTAGCTCATTCTTGGATGAAGAGCC
CCTTTTAGTCTGACTGACATCATTCTTGAATGAAGAAAAGCGAGATCCTGCCACCACACGCGAGG
GTGCACGGAAAGCAAATCTTTCCCTTTTCAGTTGTTACAACGAGGCCGAATGAGACCCGATTCTC
TTCTGTGAATGGAATGTCTTCCCCCATCCCTTCGTTTACTAACTGTAACTGAATGCCACGCCCTA
GCGAACCTCAGAGGAAGGAAAAACCACCGAAAGGGATAGAAGAGCACGCATTCGACTAGCTTCCT
GAGTCTTGCAACTCAGCTCCTTCGTAACCAGAGTCTTGCAACTCAGCTCCTTCGTAACCAGAGTC
TTGCAACTCAGCTCCTTCGTAACCTGACTGACGCAACTCAGCTCCTTCGTACCTTGTGATAAGGT
TGAAACTGGTCTTGAAGCATAGGCTAGGCAAGGAAGCTCTCCTAC
Found at i:292626 original size:30 final size:30
Alignment explanation
Indices: 292590--292705 Score: 187
Period size: 30 Copynumber: 3.9 Consensus size: 30
292580 CTAGCTTCCT
292590 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
292620 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
*
292650 GAGTCTTGCAACTCAGCTCCTTCGTAACCT
1 GAGTCTTGCAACTCAGCTCCTTCGTAACCA
* ***
292680 GACTGACGCAACTCAGCTCCTTCGTA
1 GAGTCTTGCAACTCAGCTCCTTCGTA
292706 CCTTGTGATA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.22, C:0.34, G:0.17, T:0.27
Consensus pattern (30 bp):
GAGTCTTGCAACTCAGCTCCTTCGTAACCA
Left flanking sequence: Indices 292090 -- 292589
AGCATGGTGAGTGAATCAGACCGCAGTGACACAGTCGTCCAAAGCTTTTGAACCCGAAAAAAAGA
TGGAATTCTCCTTACTCTAAGGAGTAAGTGAGTCTAAACTACCTTACTCTAACGAGTAAGTGAGT
CTAAACTACCTTACTCTAACGAGTAAGTGAGTCTAAACTACCTTAAAGGGAAGCCAATCTTCATA
AAAGAAAGACGCCGGCCAGCCTAGCTCATTCTTGGATGAAGAGCCCCTTTTAGTCTGACTGACAT
CATTCTTGAATGAAGAAAAGCGAGATCCTGCCACCACACGCGAGGGTGCACGGAAAGCAAATCTT
TCCCTTTTCAGTTGTTACAACGAGGCCGAATGAGACCCGATTCTCTTCTGTGAATGGAATGTCTT
CCCCCATCCCTTCGTTTACTAACTGTAACTGAATGCCACGCCCTAGCGAACCTCAGAGGAAGGAA
AAACCACCGAAAGGGATAGAAGAGCACGCATTCGACTAGCTTCCT
Right flanking sequence: Indices 292706 -- 293205
CCTTGTGATAAGGTTGAAACTGGTCTTGAAGCATAGGCTAGGCAAGGAAGCTCTCCTACAACTCG
AGAATAGTCGGGAAAGGGCATAGAAGGGCTTTTAACGCTTAAGATGGGCAATAGATAGGTTATGT
AATCGCTCAAGCTTATTCAAGCTTTTTGGAAGGTAGTTTACTTGCTTACTCAAGAGAGTAAGGAA
TGTAGCTACTTCCTGTCTTGGTGTATGTCAAAGAAGTGGCAGTGTCAGCAGTTGAAAAAGAATCC
ATGGGGCTGGGTGAAGCCCATTAGGCGACCCTGAGTGGAATACCCGTCCTTAGCTCGTTAACTCC
GCTGTTCTCCCCATAGTCTTTTAAAGCGATGCCTTCTCTTCCTAAGCTTGGTTCATCTACTCTTC
TTTCTATGATGATCACTATCAATTCTCCTCGTACTGTACGTCAGTCCGTTCTTTTTCGCTTTCCG
TCGGGCAAGTCTCAGTCTTTTATTGGGGGTTGGTCAGAGTGCTGG
Found at i:323378 original size:18 final size:18
Alignment explanation
Indices: 323352--323388 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
323342 TCGTGAGCCA
323352 TACCCATAGCTCTCTCAC
1 TACCCATAGCTCTCTCAC
* *
323370 TACCGATAGTTCTCTCAC
1 TACCCATAGCTCTCTCAC
323388 T
1 T
323389 CCTTCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.38, G:0.08, T:0.32
Consensus pattern (18 bp):
TACCCATAGCTCTCTCAC
Left flanking sequence: Indices 322852 -- 323351
GAGTGAATGCAGCCAGCTTGAGATCTCACTTCTAAAGCTTTCATTTTTCTTCTTAGCCGTCGGGT
TCCACACCAAGATCAAATAAGGGACCACTAGTTGCATTTCTCATAGACTAAGGTTGGACCACTGC
CGGAGAGAAAGGCTGACCCTCTCAAAAAACCCTTAGCACAATAAGAGGTGCGGGGGATGGCGATC
CAACTCCTACCTGGCTTAGACGGAACAGACAGAGATCCTTTCAAGTCAAGCCCTCCTCACTCAAC
AAGGGGAATGACTAGAATCCTGCGGGGGTTAGTAAAAGACTGGGCCAACGGGGCTCCACCTCAAG
GAAGAGAGATCAATCCAATCGTTTCTTACATCGGTCTTAGAAAGCAAAGCCCGGGGTTTCTAAAC
CCTTTGAGTCCTACTCTGAGATGAGAAGTCGAAAGACAGAAAGAGAATTGCCTCTTATTCGTACT
CGCTCGCCTATGAACGAGGCAGGTGCTATAACCGTTCGTGAGCCA
Right flanking sequence: Indices 323389 -- 323888
CCTTCTAGTAAGGGAAAGTTCTGATAAGGAAAGCAATCATAAAAGCATGTCCACACTAAGAAAAG
CGTACTCCTAGACTAGTATCTCCGTGTATTCCCTATCGAGAACAAGAAAGAAACTATTAAGACAC
TAGAAAGAACTCGCTCTTACCGCCGGACGGATACGAACGCATACGAAATCGATCCTATAACAATC
GCCTCCAGGCGACCCCCTCGGAAACCCCCTCCGACTCCTATAATGCAAGTGCAATTGAAAGATTC
TCGTAAGTGACCAGTGAACCTGCTACTTGCGCAGTTGCTAAAACGTGAATCGCATCTCTAAAGTG
AGAAGGATTTGATATTGGGCATTGCCTTCCCTTACTTACTAATGGGAAATCGATCAGTCCAACCT
TTTCTGATTCACGTAGCAAAGAAGCCCTTCTAGGTGCCTATTCTTTGTGCGAGGGTGGTAAGGGG
TGCTTTCCCTGTGCCCATTGCCCCTACTTTTAGTAATTATATGCT
Found at i:326176 original size:14 final size:14
Alignment explanation
Indices: 326157--326183 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
326147 TGCGGCAGGC
326157 ATTATCCGGGAACG
1 ATTATCCGGGAACG
326171 ATTATCCGGGAAC
1 ATTATCCGGGAAC
326184 TTACAGAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (14 bp):
ATTATCCGGGAACG
Left flanking sequence: Indices 325657 -- 326156
CAGAAAGTAGCGACACTGATACCTTAGAACTACCAAGTACCAGGCCTAGACCGGGGAGTCGGAAC
TAATAACAGCTTTTATAAACTCCAAATCCAACTCTTCCAACTCCAAGTTGAACGCAGGAAACTCT
ACCTACAACCCTCAATTCCGGAGGTTGGCAGCTCATCAACTACGAGAAAAATGTGATCGCAATCA
AGCACATAACATTGAATCTCGTGCAAGACATTCTTTAGCTAAGTCTATAGCAGCTGATTCAATAG
CGGATGGTCTTGTTGAAGGCTTTTTTACTTCTACTGAGAGCAAAGTCCTTACTTACCAGACCGGG
CTACTTGAATAGCAGAAAGAAAAAATGTCACGAACCCAACTCCTAGGTCACTAGGAAGAAGAATG
GAGGGAAATAGAAGAGGTCCTGTAAAGAAGCTTTCATTCGATGCTTCTGATTCAACTCCCAGACA
AACAAGGAAGTATGCGCGAAGATAGGGTTAGTCCCTGCGGCAGGC
Right flanking sequence: Indices 326184 -- 326683
TTACAGAAGGTTGGCGTGACACGCCTAAATCCACAACGCTTCAGGCGAAGAGATATATCTTTCCG
CTTTAGCGGCTTGAACCCTTCGATCAAGAGATACCTTAAATCAAATCAACTAAGTAGCTGACCTC
TTAGACGTTCGTGGGTATTCAAATTCATACATAATCTTCTCCGACATGAGATAGAGTGAGAGGGC
CTATTCCATAGAACAAACTCAGCAAAGAAGGATCCGTATTCCACCTCAGATGGTAGAAGGGGCAA
CTCAGCCTTGTCTTTTTCTTTGGGCTAGGAACCCAGGAGAATGTTCAAAGCGATAAGAGAACAGG
TCTTTTCAGAGAAGCTCTTGCCGCTCTTCTGTTAGAGCTCTTTAGTCCCATCCCTACCAAAAAAA
GATCTCCCCTTAAAAGGTACGACTGAAAGGAGTCGTCTCGGTCTTCTCGAAAGGGAATTCTTTGA
CCGGCGGGTGCGAATCGGTAGCTCTAAAACTAGCTCTGGCGAGTT
Found at i:342062 original size:66 final size:66
Alignment explanation
Indices: 341956--342150 Score: 372
Period size: 66 Copynumber: 3.0 Consensus size: 66
341946 GCAAAATCAA
*
341956 TAGGTGCCGGAGCTGCTTTCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
342021 C
66 C
342022 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
342087 C
66 C
*
342088 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGAGCGTCTG
1 TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTG
342151 GATCAGGGAT
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 127 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (66 bp):
TAGGTGCCGGAGCTGCTTCCAATACTTACCAAGCGAATTTGCTAGATGCATCCGGACCGTCTGCA
C
Left flanking sequence: Indices 341456 -- 341955
CTTGATCATTGCATTGAGTGCGTGGTAAATGCTTTTGTTTTGACTGAACCTCCCATTGCTCTCTC
TCCGATAGCATGCAGCTTATAAGGAAGACAGATATCTATAAAGTGTTCAGTGATATGACTTTCCT
ACTGATTGAATCGCTTAAATGAATGAAAGGAAAGGTTGCTTTTAGGAGAAATCTGCCCCCGTAAG
AGGCGTTGCAAGCAAATAGTTTTTTGAAAAGCGGCGAAGCTTGTCTTGTAGAAAATAGAAAAGTT
GTATTGTTATTCGTAGAGGGGTCGCGGAAGAATATTGGGTTCGAGTCCCGAAGGTAGGGGATGAT
TATCGGCTCCTCATAAATCTAAAAAAGGAGCTGGGGCCGGATCACCCTATTCATTTGTTCTAAAA
AAAGAGAATAAAGAGGGGAAGAATCGACAAAGAATGACGAACATAAAATCGTGAATGAAAAAGCG
TTAGGCGAATGATCTACTCTGTTATGTTAGAAGGCGCAAAATCAA
Right flanking sequence: Indices 342151 -- 342650
GATCAGGGATGCCTGAAGTTATTCTTCAGGGAATACCGGTTCCTCCGGGTATCGATCTAGCCTCG
ATCTATTCTTCGCCATTTTTCTTCAGTCCCTCTGTTTGGATCTCCGGTGATATTGAGGATCCTTT
GATTATCTCGAAGCTCAGTAATTTCAATAAATTTTTATTAGTTCTACAGAAGGATTTTTTTCAAG
GGACCATACAAGGCCCCTATATCAAAGCTCTCCAAGGGGTATTGGACCAAACTTCACCCGCTTTA
CTAGCGGGAAAACTGGACTTCCTACTCATTAGAGAGTACAACTCTTGGTATAACGTTTATGCTAA
GAATATGGGTCTCGGTGTGCCCGTACATGATTGGTATGTGAAGAACTTTGGTAAATTTGTCCCTT
CCCCCCTGGAGCCCCTCTTGACTGACAATTTTGGTTTCTTTTTTATTGGCATCCTTCTCATAGTT
GTGTTTTCTATCTCTCTATTATTATGGCGCAGAAAGAGAAAGAAT
Found at i:352220 original size:17 final size:18
Alignment explanation
Indices: 352198--352240 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
352188 ATACCTTTAT
352198 TGCTTTACTTCC-TTT-C
1 TGCTTTACTTCCATTTCC
*
352214 TGACTTTATTTCCATTTCC
1 TG-CTTTACTTCCATTTCC
352233 TGCTTTAC
1 TGCTTTAC
352241 CGGTTGGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.09
17 9 0.41
18 8 0.36
19 3 0.14
ACGTcount: A:0.12, C:0.28, G:0.07, T:0.53
Consensus pattern (18 bp):
TGCTTTACTTCCATTTCC
Left flanking sequence: Indices 351698 -- 352197
GACAGTAGCTTTGAATCGGATGTTAACGAATAGGCTGTGTCCTCTCTGTCCAATCGGTCTAATCC
GATGGCATTCTTTCTTGAAACTAAAATCCTTCCCCTGCCTAAAAAATCTCCCTTTTTTCCCTTTC
ATTCATTCCTCATGCACTGAGAAGTCTCAAAGATGCTTACTTTGTCGGAGGGCCTTTTGCCCGCA
CATTCAAGACTACAGCTTAGCTTACCTGTGATTGCAGGGATATTCTTATCCCAACTCTTTCCTTG
GCTTCGGGTGCACTATGGAAATGAATCGTACCGGGGTGCTTCTTTGTGAAAGGGCGAGCGAATGC
ATTTCGAGGAGCTAATAAAATCCCTGGTAGATCTTTGCTACCTTTATAGCTATGTATATCCCAAT
ATCCTGACTTTTTTCTTCGCCCCTGGCTTTCTAGCCTAAGGCCAATTAGACTGAATTAGTGGTAT
TAGTATGCCTTTCCTGATTCCTTTTTTGCTTTGCTATACCTTTAT
Right flanking sequence: Indices 352241 -- 352740
CGGTTGGAGGAAGAGACTCAGCTGTTTCAGCCCCGTTTGTGAAAGAAGTGAAGTCTACTTCCTTT
TCTCTTTGACGGACACCTTCCCTTTTGAATGTACTCGAAGCAAGATGCCCACAATCAGATGCTAT
AGGAACGAACTGAACTTCGAATATGTATAGCAAGATCTTCAGTCTGAAAGGTTTCCCCTAATTAC
CCAATCTGACTCAATAGGAACTGCACTTAGACTTTCCTCTATGGCTTCGCATGTCTCTCTAGTGG
ACGGAGGGAGCGAGCTATAATCTAAAGAAAGGAAAGAAGCAACTCACATACTGATGATATGCGCT
AAAAGCCTAAAAAGAGAGCTAGTGTCCTACCTAAGTGAACCCGAAGCGAGAGCACAGGTAGAGCC
AGTTTCTTTTTGTGACCAAGAAGGAGCGGGTAGTGGATTCAGTAGATGTAGAGTCAGTTCGTTCT
CGTCCCAAAAGGAGCATTAGCAGGCACGTATCGATGTGCAAATGA
Done.