##fileformat=VCFv4.2									
"##ALT=<ID=NON_REF,Description=""Represents any possible alternative allele at this location"">"									
"##FILTER=<ID=LowQual,Description=""Low quality"">"									
"##FILTER=<ID=PASS,Description=""All filters passed"">"									
"##FORMAT=<ID=AD,Number=R,Type=Integer,Description=""Allelic depths for the ref and alt alleles in the order listed"">"									
"##FORMAT=<ID=DP,Number=1,Type=Integer,Description=""Approximate read depth (reads with MQ=255 or with bad mates are filtered)"">"									
"##FORMAT=<ID=GQ,Number=1,Type=Integer,Description=""Genotype Quality"">"									
"##FORMAT=<ID=GT,Number=1,Type=String,Description=""Genotype"">"									
"##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description=""Minimum DP observed within the GVCF block"">"									
"##FORMAT=<ID=PGT,Number=1,Type=String,Description=""Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another"">"									
"##FORMAT=<ID=PID,Number=1,Type=String,Description=""Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group"">"									
"##FORMAT=<ID=PL,Number=G,Type=Integer,Description=""Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"">"									
"##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description=""Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)"">"									
"##FORMAT=<ID=SB,Number=4,Type=Integer,Description=""Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."">"									
"##GATKCommandLine=<ID=GenomicsDBImport,CommandLine=""GenomicsDBImport  --genomicsdb-workspace-path GatkRawDBImport --sample-name-map InputGatkRawGVcf.txt --intervals NC_020431.seq  --genomicsdb-segment-size 1048576 --genomicsdb-vcf-buffer-size 16384 --overwrite-existing-genomicsdb-workspace false --batch-size 0 --consolidate false --validate-sample-name-map false --reader-threads 1 --max-num-intervals-to-import-in-parallel 1 --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 0 --cloud-index-prefetch-buffer 0 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --disable-tool-default-read-filters false"",Version=4.0.8.1,Date=""May 9, 2019 4:41:27 PM CST"">"									
"##GATKCommandLine=<ID=SelectVariants,CommandLine=""SelectVariants  --output SNP-1.vcf --select-type-to-include SNP --variant GatkRawSNP-1.vcf --reference /home/mjiang/my_data/salvia/cp/NC_020431-IRb.fasta  --invertSelect false --exclude-non-variants false --exclude-filtered false --preserve-alleles false --remove-unused-alternates false --restrict-alleles-to ALL --keep-original-ac false --keep-original-dp false --mendelian-violation false --invert-mendelian-violation false --mendelian-violation-qual-threshold 0.0 --select-random-fraction 0.0 --remove-fraction-genotypes 0.0 --fully-decode false --max-indel-size 2147483647 --min-indel-size 0 --max-filtered-genotypes 2147483647 --min-filtered-genotypes 0 --max-fraction-filtered-genotypes 1.0 --min-fraction-filtered-genotypes 0.0 --max-nocall-number 2147483647 --max-nocall-fraction 1.0 --set-filtered-gt-to-nocall false --allow-nonoverlapping-command-line-samples false --suppress-reference-path false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --disable-tool-default-read-filters false"",Version=4.0.8.1,Date=""July 19, 2022 1:45:50 PM CST"">"									
"##INFO=<ID=AC,Number=A,Type=Integer,Description=""Allele count in genotypes, for each ALT allele, in the same order as listed"">"									
"##INFO=<ID=AF,Number=A,Type=Float,Description=""Allele Frequency, for each ALT allele, in the same order as listed"">"									
"##INFO=<ID=AN,Number=1,Type=Integer,Description=""Total number of alleles in called genotypes"">"									
"##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description=""Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities"">"									
"##INFO=<ID=DP,Number=1,Type=Integer,Description=""Approximate read depth; some reads may have been filtered"">"									
"##INFO=<ID=DS,Number=0,Type=Flag,Description=""Were any of the samples downsampled?"">"									
"##INFO=<ID=END,Number=1,Type=Integer,Description=""Stop position of the interval"">"									
"##INFO=<ID=ExcessHet,Number=1,Type=Float,Description=""Phred-scaled p-value for exact test of excess heterozygosity"">"									
"##INFO=<ID=FS,Number=1,Type=Float,Description=""Phred-scaled p-value using Fisher's exact test to detect strand bias"">"									
"##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description=""Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"">"									
"##INFO=<ID=MLEAC,Number=A,Type=Integer,Description=""Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed"">"									
"##INFO=<ID=MLEAF,Number=A,Type=Float,Description=""Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed"">"									
"##INFO=<ID=MQ,Number=1,Type=Float,Description=""RMS Mapping Quality"">"									
"##INFO=<ID=MQRankSum,Number=1,Type=Float,Description=""Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities"">"									
"##INFO=<ID=QD,Number=1,Type=Float,Description=""Variant Confidence/Quality by Depth"">"									
"##INFO=<ID=RAW_MQ,Number=1,Type=Float,Description=""Raw data for RMS Mapping Quality"">"									
"##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description=""Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias"">"									
"##INFO=<ID=SOR,Number=1,Type=Float,Description=""Symmetric Odds Ratio of 2x2 contingency table to detect strand bias"">"									
##bcftools_viewCommand=view -S tmp10 GatkRawVcf382/GatkRawSNP382SmCp.id.vcf; Date=Tue Jul 19 13:44:20 2022									
##bcftools_viewVersion=1.9+htslib-1.9									
"##contig=<ID=NC_020431.seq,length=125789,assembly=NC_020431-IRb.fasta>"									
##reference=file:///home/mjiang/my_data/salvia/cp/NC_020431-IRb.fasta									
##source=GenomicsDBImport									
##source=SelectVariants									
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SM1020-1
NC_020431.seq	64	NC_020431.seq__64	G	"A,C"	185655	.	"AC=0,0;AF=0.052,0.013;AN=2;BaseQRankSum=1.01;DP=198872;ExcessHet=0.023;FS=0.635;InbreedingCoeff=0.1233;MLEAC=41,10;MLEAF=0.054,0.013;MQ=60.49;MQRankSum=0;QD=6.27;ReadPosRankSum=2.28;SOR=0.61"	GT:AD:DP:GQ:PL	"0/0:706,0,0:706:0:0,0,22902,0,22902,22902"
NC_020431.seq	89	NC_020431.seq__89	C	A	1926.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-3.166;DP=203282;ExcessHet=3.0446;FS=0;InbreedingCoeff=-0.0053;MLEAC=4;MLEAF=0.005236;MQ=64.73;MQRankSum=0;QD=0.45;ReadPosRankSum=-1.484;SOR=2.801	GT:AD:DP:GQ:PL	"0/0:719,0:719:99:0,120,1800"
NC_020431.seq	101	NC_020431.seq__101	G	"*,A"	13714600	.	"AC=2,0;AF=0.198,0.338;AN=2;BaseQRankSum=1.09;DP=461258;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=151,258;MLEAF=0.198,0.338;MQ=47.24;MQRankSum=0;QD=30.97;ReadPosRankSum=0.42;SOR=0.787"	GT:AD:DP:GQ:PL	"1/1:24,814,0:838:99:29986,1475,0,30058,2461,31045"
NC_020431.seq	116	NC_020431.seq__116	A	C	3566680	.	AC=0;AF=0.194;AN=2;BaseQRankSum=1.41;DP=543612;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=148;MLEAF=0.194;MQ=60;MQRankSum=0;QD=28.2;ReadPosRankSum=1.03;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:896,0:896:99:0,120,1800"
NC_020431.seq	190	NC_020431.seq__190	A	C	115304	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.66;DP=549807;ExcessHet=0.0028;FS=1.684;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.25;ReadPosRankSum=0.061;SOR=1.595	GT:AD:DP:GQ:PL	"0/0:896,0:896:99:0,120,1800"
NC_020431.seq	205	NC_020431.seq__205	T	G	136716	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.856;DP=550739;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=-0.152;QD=29.56;ReadPosRankSum=1.27;SOR=0.775	GT:AD:DP:GQ:PL	"0/0:896,0:896:99:0,120,1800"
NC_020431.seq	222	NC_020431.seq__222	G	A	180490	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.138;DP=552525;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.62;ReadPosRankSum=0.55;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:896,0:896:99:0,120,1800"
NC_020431.seq	226	NC_020431.seq__226	C	A	132041	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.788;DP=552920;ExcessHet=0.0028;FS=3.818;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.26;QD=28.17;ReadPosRankSum=-0.175;SOR=1.539	GT:AD:DP:GQ:PL	"0/0:896,0:896:99:0,120,1800"
NC_020431.seq	231	NC_020431.seq__231	T	G	5081080	.	AC=2;AF=0.123;AN=2;BaseQRankSum=1.45;DP=594043;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=59.95;MQRankSum=-0.219;QD=26.8;ReadPosRankSum=0.406;SOR=0.682	GT:AD:DP:GQ:PL	"1/1:40,1321:1361:99:47612,2673,0"
NC_020431.seq	251	NC_020431.seq__251	A	C	890860	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.918;DP=602880;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=26;ReadPosRankSum=0.477;SOR=0.823	GT:AD:DP:GQ:PL	"0/0:1338,0:1338:99:0,120,1800"
NC_020431.seq	260	NC_020431.seq__260	A	C	227229	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.31;DP=604289;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=59.98;MQRankSum=-0.153;QD=30.02;ReadPosRankSum=-0.243;SOR=0.764	GT:AD:DP:GQ:PL	"0/0:1338,0:1338:99:0,120,1800"
NC_020431.seq	293	NC_020431.seq__293	G	A	150398	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.523;DP=609810;ExcessHet=3.0103;FS=1.134;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=59.84;MQRankSum=-2.343;QD=32.81;ReadPosRankSum=10.78;SOR=1.046	GT:AD:DP:GQ:PL	"0/0:1338,0:1338:99:0,120,1800"
NC_020431.seq	323	NC_020431.seq__323	T	"*,G"	12692500	.	"AC=1,0;AF=0.285,0.002618;AN=2;BaseQRankSum=3.23;DP=729962;ExcessHet=160;FS=0;InbreedingCoeff=-0.3916;MLEAC=218,2;MLEAF=0.285,0.002618;MQ=4.31;MQRankSum=0;QD=26.5;ReadPosRankSum=0.73;SOR=0.652"	GT:AD:DP:GQ:PGT:PID:PL	"0/1:272,1008,0:1280:99:0|1:309_T_TAC:33826,0,8724,34655,11729,46384"
NC_020431.seq	339	NC_020431.seq__339	C	T	1258180	.	AC=0;AF=0.025;AN=2;BaseQRankSum=0.646;DP=698054;ExcessHet=-0;FS=0;InbreedingCoeff=0.921;MLEAC=19;MLEAF=0.025;MQ=60;MQRankSum=5.47;QD=27.51;ReadPosRankSum=1.66;SOR=0.807	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	345	NC_020431.seq__345	G	A	125255	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=3.47;DP=695544;ExcessHet=0.0171;FS=1.179;InbreedingCoeff=0.5695;MLEAC=3;MLEAF=0.003927;MQ=57.84;MQRankSum=-1.706;QD=28.41;ReadPosRankSum=1.2;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	353	NC_020431.seq__353	A	T	46654.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=8.23;DP=695519;ExcessHet=3.0103;FS=5.385;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=52.96;MQRankSum=-11.49;QD=29.11;ReadPosRankSum=-5.863;SOR=1.321	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	370	NC_020431.seq__370	T	C	131237	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.264;DP=695804;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=59.65;MQRankSum=-2.02;QD=28.08;ReadPosRankSum=-1.394;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	386	NC_020431.seq__386	C	A	139749	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.57;DP=697762;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.056;QD=29.37;ReadPosRankSum=-0.839;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	408	NC_020431.seq__408	G	A	163009	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.138;DP=698208;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.027;QD=23.23;ReadPosRankSum=0.126;SOR=0.975	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	437	NC_020431.seq__437	G	A	219.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.392;DP=698467;ExcessHet=3.0103;FS=0.96;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.23;ReadPosRankSum=-0.593;SOR=0.804	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	608	NC_020431.seq__608	T	C	20130	.	AC=0;AF=0.012;AN=2;BaseQRankSum=0.117;DP=706202;ExcessHet=3.2172;FS=0;InbreedingCoeff=-0.0119;MLEAC=9;MLEAF=0.012;MQ=60;MQRankSum=0;QD=1.49;ReadPosRankSum=-0.039;SOR=0.784	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	628	NC_020431.seq__628	A	G	24560.9	.	AC=0;AF=0.014;AN=2;BaseQRankSum=0.12;DP=706902;ExcessHet=3.3273;FS=0.897;InbreedingCoeff=-0.0146;MLEAC=11;MLEAF=0.014;MQ=60;MQRankSum=0;QD=1.57;ReadPosRankSum=-0.209;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	641	NC_020431.seq__641	T	C	25265.9	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.509;DP=707689;ExcessHet=3.3912;FS=0;InbreedingCoeff=-0.016;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=1.48;ReadPosRankSum=-0.272;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	653	NC_020431.seq__653	G	A	23449.2	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.198;DP=708602;ExcessHet=3.4599;FS=0;InbreedingCoeff=-0.0166;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=1.37;ReadPosRankSum=-0.097;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	701	NC_020431.seq__701	G	A	297162	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.104;DP=719589;ExcessHet=0.0892;FS=0;InbreedingCoeff=0.1904;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=0.932;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	749	NC_020431.seq__749	A	G	14074	.	AC=0;AF=0.012;AN=2;BaseQRankSum=-0.488;DP=720719;ExcessHet=3.2172;FS=0;InbreedingCoeff=-0.0119;MLEAC=9;MLEAF=0.012;MQ=60;MQRankSum=0;QD=1;ReadPosRankSum=0.111;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	770	NC_020431.seq__770	G	A	124758	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.073;DP=727997;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.03;ReadPosRankSum=2.89;SOR=0.653	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	806	NC_020431.seq__806	A	G	2559.04	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.52;DP=735440;ExcessHet=5.1033;FS=0;InbreedingCoeff=-0.0214;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=0.4;ReadPosRankSum=2.1;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	827	NC_020431.seq__827	G	A	159904	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.283;DP=736999;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.034;QD=34.26;ReadPosRankSum=1.27;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1087,0:1087:99:0,120,1800"
NC_020431.seq	857	NC_020431.seq__857	A	G	27246.3	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.008;DP=757947;ExcessHet=13.5704;FS=0;InbreedingCoeff=-0.0596;MLEAC=25;MLEAF=0.033;MQ=59.87;MQRankSum=-10.74;QD=0.83;ReadPosRankSum=1.27;SOR=0.831	GT:AD:DP:GQ:PL	"0/0:1613,0:1613:64:0,64,50453"
NC_020431.seq	864	NC_020431.seq__864	G	A	18855.9	.	AC=0;AF=0.025;AN=2;BaseQRankSum=-1.43;DP=756689;ExcessHet=7.8783;FS=0;InbreedingCoeff=-0.0422;MLEAC=19;MLEAF=0.025;MQ=59.85;MQRankSum=-13.37;QD=0.73;ReadPosRankSum=1.44;SOR=0.851	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:99:0,120,1800"
NC_020431.seq	866	NC_020431.seq__866	G	A	17351.5	.	AC=0;AF=0.026;AN=2;BaseQRankSum=-2.17;DP=756946;ExcessHet=7.6646;FS=0;InbreedingCoeff=-0.0417;MLEAC=20;MLEAF=0.026;MQ=59.85;MQRankSum=-13.04;QD=0.65;ReadPosRankSum=1.39;SOR=0.819	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:99:0,120,1800"
NC_020431.seq	870	NC_020431.seq__870	A	T	16102.7	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.564;DP=756731;ExcessHet=6.7902;FS=0;InbreedingCoeff=-0.0373;MLEAC=18;MLEAF=0.024;MQ=60.97;MQRankSum=-13.21;QD=0.68;ReadPosRankSum=1.44;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:99:0,120,1800"
NC_020431.seq	875	NC_020431.seq__875	G	A	17132.4	.	AC=0;AF=0.025;AN=2;BaseQRankSum=-1.335;DP=756412;ExcessHet=7.0055;FS=0;InbreedingCoeff=-0.0386;MLEAC=18;MLEAF=0.024;MQ=63.29;MQRankSum=-13.26;QD=0.71;ReadPosRankSum=1.23;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:99:0,120,1800"
NC_020431.seq	878	NC_020431.seq__878	G	A	16918.7	.	AC=0;AF=0.025;AN=2;BaseQRankSum=-2.643;DP=756419;ExcessHet=7.0055;FS=0;InbreedingCoeff=-0.0389;MLEAC=19;MLEAF=0.025;MQ=63.74;MQRankSum=-13.84;QD=0.69;ReadPosRankSum=0.928;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:99:0,120,1800"
NC_020431.seq	893	NC_020431.seq__893	G	A	17374.9	.	AC=0;AF=0.03;AN=2;BaseQRankSum=-1.525;DP=756151;ExcessHet=9.9378;FS=0;InbreedingCoeff=-0.0495;MLEAC=22;MLEAF=0.029;MQ=59.8;MQRankSum=-14.71;QD=0.59;ReadPosRankSum=-0.423;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1601,0:1601:0:0,0,50340"
NC_020431.seq	905	NC_020431.seq__905	G	A	12438.5	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.215;DP=755751;ExcessHet=7.6404;FS=0;InbreedingCoeff=-0.0407;MLEAC=18;MLEAF=0.024;MQ=60.78;MQRankSum=-15.52;QD=0.54;ReadPosRankSum=0.16;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1575,0:1575:3:0,3,49810"
NC_020431.seq	910	NC_020431.seq__910	T	G	6959.84	.	AC=0;AF=0.017;AN=2;BaseQRankSum=-0.26;DP=754482;ExcessHet=5.002;FS=0;InbreedingCoeff=-0.0275;MLEAC=12;MLEAF=0.016;MQ=64.73;MQRankSum=-17.04;QD=0.38;ReadPosRankSum=0.477;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	920	NC_020431.seq__920	A	C	286394	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.18;DP=753800;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.007;QD=30.67;ReadPosRankSum=1.68;SOR=0.514	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	923	NC_020431.seq__923	A	G	2076.77	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-0.087;DP=753431;ExcessHet=3.1698;FS=0;InbreedingCoeff=-0.0086;MLEAC=5;MLEAF=0.006545;MQ=72.8;MQRankSum=-14.57;QD=0.42;ReadPosRankSum=2.16;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	926	NC_020431.seq__926	C	T	49926.5	.	AC=0;AF=0.033;AN=2;BaseQRankSum=-0.36;DP=781527;ExcessHet=8.4298;FS=0;InbreedingCoeff=-0.0473;MLEAC=26;MLEAF=0.034;MQ=59.82;MQRankSum=-11.24;QD=1.48;ReadPosRankSum=1.64;SOR=0.671	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	928	NC_020431.seq__928	C	A	175.16	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.2;DP=782127;ExcessHet=3.1291;FS=0;InbreedingCoeff=-0.0059;MLEAC=2;MLEAF=0.002618;MQ=59.61;MQRankSum=-15.48;QD=0.11;ReadPosRankSum=3.32;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	944	NC_020431.seq__944	A	C	296549	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.12;DP=782441;ExcessHet=0;FS=0;InbreedingCoeff=0.9993;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.61;ReadPosRankSum=-0.08;SOR=0.551	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	950	NC_020431.seq__950	A	G	654.26	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.52;DP=783276;ExcessHet=3.264;FS=0;InbreedingCoeff=-0.0079;MLEAC=2;MLEAF=0.002618;MQ=59.39;MQRankSum=-19.02;QD=0.41;ReadPosRankSum=0.391;SOR=0.862	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	953	NC_020431.seq__953	C	T	90363.6	.	AC=0;AF=0.048;AN=2;BaseQRankSum=-0.052;DP=782492;ExcessHet=11.365;FS=0;InbreedingCoeff=-0.0633;MLEAC=37;MLEAF=0.048;MQ=59.75;MQRankSum=-14.82;QD=1.41;ReadPosRankSum=-0.25;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	959	NC_020431.seq__959	G	A	603174	.	AC=0;AF=0.062;AN=2;BaseQRankSum=-0.498;DP=786914;ExcessHet=0.0459;FS=0;InbreedingCoeff=0.1632;MLEAC=47;MLEAF=0.062;MQ=59.76;MQRankSum=-14.69;QD=8.05;ReadPosRankSum=-0.699;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	962	NC_020431.seq__962	T	A	92535.8	.	AC=0;AF=0.048;AN=2;BaseQRankSum=1.58;DP=787237;ExcessHet=12.2918;FS=0;InbreedingCoeff=-0.0656;MLEAC=37;MLEAF=0.048;MQ=59.73;MQRankSum=-15.58;QD=1.45;ReadPosRankSum=-0.736;SOR=0.717	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	968	NC_020431.seq__968	G	A	1429.2	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.112;DP=789416;ExcessHet=4.682;FS=0;InbreedingCoeff=-0.02;MLEAC=5;MLEAF=0.006545;MQ=59.39;MQRankSum=-19.75;QD=0.36;ReadPosRankSum=-1.434;SOR=0.829	GT:AD:DP:GQ:PL	"0/0:1547,0:1547:99:0,120,1800"
NC_020431.seq	983	NC_020431.seq__983	G	A	81511.2	.	AC=0;AF=0.046;AN=2;BaseQRankSum=0.435;DP=789181;ExcessHet=15.636;FS=0.923;InbreedingCoeff=-0.0715;MLEAC=35;MLEAF=0.046;MQ=59.67;MQRankSum=-17.02;QD=1.31;ReadPosRankSum=-1.507;SOR=0.81	GT:AD:DP:GQ:PL	"0/0:1595,0:1595:0:0,0,50843"
NC_020431.seq	986	NC_020431.seq__986	G	A	579.57	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.145;DP=791051;ExcessHet=5.7429;FS=2.444;InbreedingCoeff=-0.0242;MLEAC=4;MLEAF=0.005236;MQ=59.36;MQRankSum=-22.11;QD=0.16;ReadPosRankSum=-1.169;SOR=1.178	GT:AD:DP:GQ:PL	"0/0:1584,0:1584:0:0,0,49760"
NC_020431.seq	1013	NC_020431.seq__1013	C	T	37372.5	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.366;DP=789876;ExcessHet=12.1461;FS=1.885;InbreedingCoeff=-0.0527;MLEAC=19;MLEAF=0.025;MQ=60.04;MQRankSum=-15.85;QD=1.41;ReadPosRankSum=0.097;SOR=0.966	GT:AD:DP:GQ:PL	"0/0:1584,0:1584:42:0,42,51412"
NC_020431.seq	1067	NC_020431.seq__1067	A	C	1317550	.	AC=0;AF=0.025;AN=2;BaseQRankSum=1.47;DP=782154;ExcessHet=-0;FS=0;InbreedingCoeff=0.9211;MLEAC=19;MLEAF=0.025;MQ=60;MQRankSum=0;QD=29.2;ReadPosRankSum=0.887;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1094	NC_020431.seq__1094	A	G	4952.04	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=1.07;DP=782400;ExcessHet=3.2659;FS=0.935;InbreedingCoeff=-0.0099;MLEAC=5;MLEAF=0.006545;MQ=67.92;MQRankSum=0;QD=0.67;ReadPosRankSum=2.46;SOR=0.873	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1163	NC_020431.seq__1163	A	G	28.22	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.26;DP=782455;ExcessHet=3.2633;FS=0;InbreedingCoeff=-0.0074;MLEAC=1;MLEAF=0.001309;MQ=83.67;MQRankSum=0;QD=0.02;ReadPosRankSum=1.35;SOR=0.849	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1217	NC_020431.seq__1217	G	A	204368	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-3.507;DP=781429;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.55;ReadPosRankSum=1.06;SOR=0.467	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1289	NC_020431.seq__1289	A	C	3267510	.	AC=0;AF=0.088;AN=2;BaseQRankSum=0.014;DP=808653;ExcessHet=-0;FS=0;InbreedingCoeff=0.9836;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=34.42;ReadPosRankSum=-0.317;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1313	NC_020431.seq__1313	A	C	116384	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.05;DP=809265;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.53;ReadPosRankSum=-1.173;SOR=0.099	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1331	NC_020431.seq__1331	G	A	289315	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.6;DP=811534;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.23;ReadPosRankSum=-0.868;SOR=0.455	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1337	NC_020431.seq__1337	G	A	5073040	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.876;DP=859148;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=0.1;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1470	NC_020431.seq__1470	T	G	1039110	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.033;DP=868445;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=33.47;ReadPosRankSum=1.68;SOR=0.592	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1511	NC_020431.seq__1511	T	G	126546	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.2;DP=869668;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.91;ReadPosRankSum=1.25;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1476,0:1476:99:0,120,1800"
NC_020431.seq	1591	NC_020431.seq__1591	T	C	31101200	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.317;DP=1017513;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=31.31;ReadPosRankSum=-0.034;SOR=0.739	GT:AD:DP:GQ:PL	"1/1:12,1606:1618:99:70382,4396,0"
NC_020431.seq	1616	NC_020431.seq__1616	G	"A,C"	29876700	.	"AC=2,0;AF=0.53,0.002618;AN=2;BaseQRankSum=-0.067;DP=1029665;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=405,2;MLEAF=0.53,0.002618;MQ=60;MQRankSum=0;QD=31.45;ReadPosRankSum=0.13;SOR=0.683"	GT:AD:DP:GQ:PL	"1/1:27,1646,0:1673:99:71157,3900,0,71244,5037,72381"
NC_020431.seq	1652	NC_020431.seq__1652	C	T	82313	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.33;DP=993618;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.27;ReadPosRankSum=1.11;SOR=0.797	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1672	NC_020431.seq__1672	G	A	266739	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-2.098;DP=993687;ExcessHet=0;FS=0;InbreedingCoeff=0.9924;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.57;ReadPosRankSum=-0.724;SOR=0.782	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1718	NC_020431.seq__1718	T	C	67988	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.793;DP=994292;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=0.482;SOR=0.46	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1741	NC_020431.seq__1741	A	G	159461	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.52;DP=994238;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.016;QD=27.76;ReadPosRankSum=-1.672;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1742	NC_020431.seq__1742	T	G	1073150	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-1.644;DP=994534;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.09;ReadPosRankSum=0.113;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1829	NC_020431.seq__1829	C	T	2073600	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.414;DP=1013662;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=26.08;ReadPosRankSum=0.35;SOR=0.771	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	1837	NC_020431.seq__1837	T	A	41864900	.	AC=2;AF=0.89;AN=2;BaseQRankSum=0.598;DP=1126247;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=33.85;ReadPosRankSum=0.135;SOR=0.733	GT:AD:DP:GQ:PL	"1/1:1,1596:1597:99:60469,4789,0"
NC_020431.seq	1872	NC_020431.seq__1872	T	G	1705360	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.204;DP=1116060;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.08;ReadPosRankSum=0.136;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	1932	NC_020431.seq__1932	A	G	27425500	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.132;DP=1109514;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=25.42;ReadPosRankSum=0.106;SOR=0.667	GT:AD:DP:GQ:PL	"1/1:4,1670:1674:99:62838,4858,0"
NC_020431.seq	1994	NC_020431.seq__1994	A	C	255781	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.06;DP=1105566;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=7.3;QD=27.65;ReadPosRankSum=1.74;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1660,0:1660:99:0,120,1800"
NC_020431.seq	2068	NC_020431.seq__2068	G	A	26909000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.159;DP=1109205;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.56;ReadPosRankSum=-0.079;SOR=0.726	GT:AD:DP:GQ:PL	"1/1:7,1676:1683:99:62601,4763,0"
NC_020431.seq	2136	NC_020431.seq__2136	G	T	204471	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.807;DP=1102518;ExcessHet=0.0028;FS=1.658;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.062;QD=33.63;ReadPosRankSum=1.33;SOR=0.522	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	2170	NC_020431.seq__2170	T	A	305777	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.72;DP=1102270;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.55;ReadPosRankSum=0.685;SOR=0.295	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	2188	NC_020431.seq__2188	A	C	48115	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.443;DP=1102052;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.62;ReadPosRankSum=-0.038;SOR=0.629	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	2309	NC_020431.seq__2309	G	A	304752	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.7;DP=1102159;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=0.766;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	2335	NC_020431.seq__2335	T	G	26893000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.6;DP=1124008;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=35.36;ReadPosRankSum=0.358;SOR=0.732	GT:AD:DP:GQ:PL	"1/1:11,1658:1669:99:61717,4674,0"
NC_020431.seq	2345	NC_020431.seq__2345	G	A	183696	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.44;DP=1114116;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.3;ReadPosRankSum=0.783;SOR=0.564	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2406	NC_020431.seq__2406	C	T	312150	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.46;DP=1114648;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=0.285;SOR=0.555	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2407	NC_020431.seq__2407	C	T	116204	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.294;DP=1114557;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=59.35;MQRankSum=0;QD=30.82;ReadPosRankSum=0.801;SOR=0.62	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2440	NC_020431.seq__2440	G	A	1736410	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.491;DP=1116745;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=-0.198;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2518	NC_020431.seq__2518	G	A	164427	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.34;DP=1113478;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.92;ReadPosRankSum=1.71;SOR=0.63	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2530	NC_020431.seq__2530	G	A	113720	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.585;DP=1113309;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=5.31;QD=29.63;ReadPosRankSum=0.174;SOR=0.397	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2561	NC_020431.seq__2561	T	G	669278	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.78;DP=1114088;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0.039;QD=28.76;ReadPosRankSum=0.065;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2567	NC_020431.seq__2567	A	C	5172340	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.732;DP=1116059;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=29.94;ReadPosRankSum=-0.051;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2634	NC_020431.seq__2634	T	C	890858	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.618;DP=1113757;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31.54;ReadPosRankSum=-0.233;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	2646	NC_020431.seq__2646	G	T	30179800	.	AC=2;AF=0.581;AN=2;BaseQRankSum=0.072;DP=1126343;ExcessHet=-0;FS=0;InbreedingCoeff=0.9973;MLEAC=444;MLEAF=0.581;MQ=60;MQRankSum=0;QD=28.86;ReadPosRankSum=0.1;SOR=0.674	GT:AD:DP:GQ:PL	"1/1:5,1652:1657:99:61716,4772,0"
NC_020431.seq	2658	NC_020431.seq__2658	T	G	192948	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.65;DP=1112110;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.061;QD=29.41;ReadPosRankSum=-1.147;SOR=0.567	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2674	NC_020431.seq__2674	A	G	49570	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.416;DP=1111740;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.11;ReadPosRankSum=0.576;SOR=0.189	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2757	NC_020431.seq__2757	C	G	907278	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.319;DP=1112692;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=34.66;ReadPosRankSum=0.245;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2767	NC_020431.seq__2767	C	G	340496	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.268;DP=1112432;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.4;ReadPosRankSum=0.316;SOR=0.575	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2779	NC_020431.seq__2779	T	G	132410	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.703;DP=1112376;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=36.76;ReadPosRankSum=-0.181;SOR=0.493	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2795	NC_020431.seq__2795	T	G	132370	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.55;DP=1112400;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.54;ReadPosRankSum=-0.007;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	2911	NC_020431.seq__2911	T	G	6988930	.	AC=0;AF=0.228;AN=2;BaseQRankSum=1;DP=1119184;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=174;MLEAF=0.228;MQ=60;MQRankSum=0;QD=21.53;ReadPosRankSum=0.269;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	3009	NC_020431.seq__3009	G	A	204984	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.24;DP=1110876;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.87;ReadPosRankSum=1.75;SOR=0.526	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	3042	NC_020431.seq__3042	G	T	307774	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.4;DP=1111371;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.04;ReadPosRankSum=1.21;SOR=0.59	GT:AD:DP:GQ:PL	"0/0:1581,0:1581:99:0,120,1800"
NC_020431.seq	3069	NC_020431.seq__3069	C	T	27489500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.241;DP=1134148;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=27.86;ReadPosRankSum=0.346;SOR=0.608	GT:AD:DP:GQ:PL	"1/1:12,1683:1695:99:63551,4612,0"
NC_020431.seq	3072	NC_020431.seq__3072	A	C	97476	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.11;DP=1087754;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.17;ReadPosRankSum=0.563;SOR=0.317	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3103	NC_020431.seq__3103	T	G	145396	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.14;DP=1087589;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=1.25;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3116	NC_020431.seq__3116	T	G	303868	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.119;DP=1087571;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.57;ReadPosRankSum=0.844;SOR=0.385	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3160	NC_020431.seq__3160	A	C	1746260	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.516;DP=1090338;ExcessHet=-0;FS=0;InbreedingCoeff=0.9997;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.11;ReadPosRankSum=-0.163;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3244	NC_020431.seq__3244	C	A	234957	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.792;DP=1087793;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.048;QD=30.2;ReadPosRankSum=-1.785;SOR=0.792	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3281	NC_020431.seq__3281	C	T	139637	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.47;DP=1087537;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=0.829;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3386	NC_020431.seq__3386	T	C	1364740	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.379;DP=1087420;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.67;ReadPosRankSum=1.06;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3387	NC_020431.seq__3387	T	G	1266280	.	AC=0;AF=0.022;AN=2;BaseQRankSum=0.592;DP=1087448;ExcessHet=0;FS=0;InbreedingCoeff=0.9396;MLEAC=17;MLEAF=0.022;MQ=60;MQRankSum=0.113;QD=29.53;ReadPosRankSum=1.1;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3436	NC_020431.seq__3436	A	C	947602	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.9;DP=1086690;ExcessHet=-0;FS=0;InbreedingCoeff=0.9997;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=32.63;ReadPosRankSum=-0.243;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3448	NC_020431.seq__3448	A	G	638538	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.92;DP=1086439;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.36;ReadPosRankSum=0.857;SOR=0.526	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3544	NC_020431.seq__3544	G	A	153666	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.79;DP=1085227;ExcessHet=0.0028;FS=1.654;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.13;ReadPosRankSum=-0.086;SOR=0.354	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3557	NC_020431.seq__3557	G	A	203027	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.17;DP=1085395;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.97;ReadPosRankSum=1.25;SOR=0.325	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3558	NC_020431.seq__3558	G	A	197711	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.036;DP=1085483;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.31;ReadPosRankSum=0.362;SOR=0.538	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3622	NC_020431.seq__3622	A	C	1178700	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.515;DP=1086621;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=35.21;ReadPosRankSum=0.625;SOR=0.583	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3655	NC_020431.seq__3655	C	T	210558	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.74;DP=1087029;ExcessHet=0;FS=3.032;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=0.47;SOR=0.473	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3663	NC_020431.seq__3663	T	C	145298	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.343;DP=1087276;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.31;ReadPosRankSum=1.36;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3748	NC_020431.seq__3748	T	C	297635	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.789;DP=1086378;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.86;ReadPosRankSum=2.55;SOR=0.604	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3784	NC_020431.seq__3784	A	G	158363	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.607;DP=1087170;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.023;QD=34.65;ReadPosRankSum=-1.042;SOR=0.534	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3787	NC_020431.seq__3787	T	G	1279360	.	AC=0;AF=0.039;AN=2;BaseQRankSum=1.24;DP=1093772;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=32.49;ReadPosRankSum=0.394;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3838	NC_020431.seq__3838	A	C	140278	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.92;DP=1093972;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.282;QD=33.44;ReadPosRankSum=-0.114;SOR=0.76	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3899	NC_020431.seq__3899	C	A	1236540	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.21;DP=1094792;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=29.05;ReadPosRankSum=0.009;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3921	NC_020431.seq__3921	T	C	85412	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.305;DP=1094445;ExcessHet=0.0028;FS=3.032;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.88;ReadPosRankSum=0.81;SOR=0.488	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	3992	NC_020431.seq__3992	A	G	614253	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.056;DP=1095736;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.31;ReadPosRankSum=-1.035;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4004	NC_020431.seq__4004	C	T	206935	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.599;DP=1095305;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.84;ReadPosRankSum=-1.5;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4026	NC_020431.seq__4026	C	T	154789	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.71;DP=1095288;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.8;ReadPosRankSum=1.32;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4028	NC_020431.seq__4028	C	A	1075080	.	AC=0;AF=0.034;AN=2;BaseQRankSum=0.591;DP=1095699;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=29.95;ReadPosRankSum=0.193;SOR=0.653	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4032	NC_020431.seq__4032	T	G	289503	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.684;DP=1093236;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.053;QD=30.22;ReadPosRankSum=1.69;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4044	NC_020431.seq__4044	C	T	1202420	.	AC=0;AF=0.021;AN=2;BaseQRankSum=-0.643;DP=1093432;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=29.85;ReadPosRankSum=-0.423;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	4080	NC_020431.seq__4080	G	A	6717390	.	AC=2;AF=0.123;AN=2;BaseQRankSum=0.048;DP=1104267;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=-0.241;SOR=0.642	GT:AD:DP:GQ:PL	"1/1:37,1683:1720:99:63146,3641,0"
NC_020431.seq	4095	NC_020431.seq__4095	A	C	108647	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.728;DP=1092728;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=-0.149;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4218	NC_020431.seq__4218	T	G	437293	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.66;DP=1093103;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.44;ReadPosRankSum=0.195;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4274	NC_020431.seq__4274	A	G	330930	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1;DP=1092686;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=35.95;ReadPosRankSum=0.874;SOR=0.737	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4312	NC_020431.seq__4312	A	C	186178	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.12;DP=1093025;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.53;ReadPosRankSum=0.223;SOR=0.772	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4330	NC_020431.seq__4330	A	C	634459	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.047;DP=1093323;ExcessHet=0;FS=0;InbreedingCoeff=0.9987;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=36.33;ReadPosRankSum=-0.211;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4346	NC_020431.seq__4346	T	G	313837	.	AC=0;AF=0.016;AN=2;BaseQRankSum=4.6;DP=1093949;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=32.31;ReadPosRankSum=1.15;SOR=0.176	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	4347	NC_020431.seq__4347	A	C	6074500	.	AC=2;AF=0.123;AN=2;BaseQRankSum=1.12;DP=1091542;ExcessHet=-0;FS=0;InbreedingCoeff=0.9993;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=34.29;ReadPosRankSum=0.667;SOR=0.483	GT:AD:DP:GQ:PL	"1/1:34,1584:1618:99:57337,3611,0"
NC_020431.seq	4355	NC_020431.seq__4355	T	C	162673	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.1;DP=1096976;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.05;ReadPosRankSum=1.01;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	4375	NC_020431.seq__4375	G	A	44878000	.	AC=2;AF=0.89;AN=2;BaseQRankSum=0.354;DP=1110078;ExcessHet=-0;FS=0;InbreedingCoeff=0.9992;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=33.3;ReadPosRankSum=-0.115;SOR=0.695	GT:AD:DP:GQ:PL	"1/1:2,1567:1569:99:70469,4776,0"
NC_020431.seq	4377	NC_020431.seq__4377	T	C	26154500	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.856;DP=1115255;ExcessHet=-0;FS=0;InbreedingCoeff=0.9982;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=31.74;ReadPosRankSum=0.567;SOR=0.814	GT:AD:DP:GQ:PL	"1/1:4,1568:1572:99:57211,4637,0"
NC_020431.seq	4405	NC_020431.seq__4405	A	G	95945.2	.	AC=0;AF=0.0075;AN=0;BaseQRankSum=-2.328;DP=1125453;ExcessHet=0.0164;FS=0;InbreedingCoeff=0.6641;MLEAC=2;MLEAF=0.005;MQ=5.23;MQRankSum=0;QD=24.48;ReadPosRankSum=4.92;SOR=0.636	GT:AD:DP:PL	"./.:1667,0:1667:0,0,0"
NC_020431.seq	4415	NC_020431.seq__4415	G	"A,*"	18629700	.	"AC=2,0;AF=0.474,0.06;AN=2;BaseQRankSum=1.07;DP=1083950;ExcessHet=0;FS=0;InbreedingCoeff=0.9928;MLEAC=363,46;MLEAF=0.475,0.06;MQ=57.03;MQRankSum=0;QD=30.19;ReadPosRankSum=1.61;SOR=0.496"	GT:AD:DP:GQ:PL	"1/1:23,1413,0:1436:99:47835,3819,0,47900,4190,48271"
NC_020431.seq	4465	NC_020431.seq__4465	C	T	4908090	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.376;DP=1053726;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=28.66;ReadPosRankSum=0.12;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4516	NC_020431.seq__4516	T	G	2570050	.	AC=0;AF=0.058;AN=2;BaseQRankSum=1.6;DP=1052658;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=25.41;ReadPosRankSum=0.929;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4520	NC_020431.seq__4520	A	C	44684	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.41;DP=1051694;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.5;ReadPosRankSum=2.65;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4580	NC_020431.seq__4580	G	A	939362	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.793;DP=1052899;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=35.19;ReadPosRankSum=-0.18;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4649	NC_020431.seq__4649	A	G	328842	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.752;DP=1051190;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.73;ReadPosRankSum=0.937;SOR=0.498	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4691	NC_020431.seq__4691	G	C	120741	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=7.09;DP=1050880;ExcessHet=0.0594;FS=3.064;InbreedingCoeff=0.4404;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=-0.21;QD=26.72;ReadPosRankSum=-1.329;SOR=2.24	GT:AD:DP:GQ:PL	"0/0:1557,0:1557:99:0,117,1755"
NC_020431.seq	4696	NC_020431.seq__4696	G	"T,A"	14182800	.	"AC=0,0;AF=0.188,0.186;AN=2;BaseQRankSum=-0.273;DP=1046207;ExcessHet=-0;FS=0;InbreedingCoeff=0.9926;MLEAC=144,142;MLEAF=0.188,0.186;MQ=60;MQRankSum=0;QD=24.84;ReadPosRankSum=0.652;SOR=0.554"	GT:AD:DP:GQ:PL	"0/0:1557,0,0:1557:99:0,117,1755,117,1755,1755"
NC_020431.seq	4792	NC_020431.seq__4792	T	C	259323	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.321;DP=1057275;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=35.32;ReadPosRankSum=0.358;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	4864	NC_020431.seq__4864	T	G	311973	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=5.52;DP=1058626;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.62;ReadPosRankSum=0.956;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	4970	NC_020431.seq__4970	T	G	1787440	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.273;DP=1060531;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=32.7;ReadPosRankSum=-0.049;SOR=0.811	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	4998	NC_020431.seq__4998	A	G	279485	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.14;DP=1060270;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=4.23;QD=30.94;ReadPosRankSum=1.77;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5013	NC_020431.seq__5013	G	A	160731	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.352;DP=1060320;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.02;QD=29.96;ReadPosRankSum=-0.248;SOR=0.517	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5144	NC_020431.seq__5144	T	G	61676	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.35;DP=1060197;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.28;ReadPosRankSum=0.739;SOR=0.366	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5168	NC_020431.seq__5168	T	C	158833	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.728;DP=1060444;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.017;QD=30.68;ReadPosRankSum=0.581;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5172	NC_020431.seq__5172	A	C	67702	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.819;DP=1060971;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=-1.354;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5177	NC_020431.seq__5177	C	T	64830	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.651;DP=1061002;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.74;ReadPosRankSum=0.326;SOR=0.39	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5187	NC_020431.seq__5187	A	C	431615	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.404;DP=1061604;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.19;ReadPosRankSum=0.833;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5211	NC_020431.seq__5211	G	A	182685	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.72;DP=1062008;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.034;QD=30.34;ReadPosRankSum=1.99;SOR=0.34	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5323	NC_020431.seq__5323	C	T	1252760	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.852;DP=1063220;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=20.29;ReadPosRankSum=-0.051;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	5328	NC_020431.seq__5328	A	"*,C"	704830	.	"AC=0,0;AF=0.005236,0.005236;AN=2;BaseQRankSum=1.12;DP=1063792;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4,4;MLEAF=0.005236,0.005236;MQ=40.71;MQRankSum=0;QD=30.96;ReadPosRankSum=1.23;SOR=0.644"	GT:AD:DP:GQ:PL	"0/0:1594,0,0:1594:99:0,120,1800,120,1800,1800"
NC_020431.seq	5329	NC_020431.seq__5329	G	"T,*"	41827700	.	"AC=2,0;AF=0.882,0.005236;AN=2;BaseQRankSum=3.02;DP=1144298;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=674,4;MLEAF=0.882,0.005236;MQ=59.74;MQRankSum=0;QD=29.87;ReadPosRankSum=0.771;SOR=0.29"	GT:AD:DP:GQ:PL	"1/1:1,1711,0:1712:99:63854,5098,0,63857,5136,63896"
NC_020431.seq	5341	NC_020431.seq__5341	G	T	187121	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.932;DP=1112117;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.95;ReadPosRankSum=0.651;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1697,0:1697:99:0,120,1800"
NC_020431.seq	5352	NC_020431.seq__5352	C	T	187503	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.23;DP=1112169;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.91;ReadPosRankSum=1.77;SOR=0.653	GT:AD:DP:GQ:PL	"0/0:1697,0:1697:99:0,120,1800"
NC_020431.seq	5367	NC_020431.seq__5367	A	G	5117670	.	AC=0;AF=0.099;AN=2;BaseQRankSum=-0.485;DP=1110440;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=29.89;ReadPosRankSum=0.011;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1697,0:1697:99:0,120,1800"
NC_020431.seq	5369	NC_020431.seq__5369	T	C	879583	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.022;DP=1112564;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=37.07;ReadPosRankSum=0.231;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1697,0:1697:99:0,120,1800"
NC_020431.seq	5370	NC_020431.seq__5370	C	T	668983	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.08;DP=1112848;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.89;ReadPosRankSum=0.542;SOR=0.582	GT:AD:DP:GQ:PL	"0/0:1697,0:1697:99:0,120,1800"
NC_020431.seq	5371	NC_020431.seq__5371	G	A	28719500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.205;DP=1106093;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.43;ReadPosRankSum=0.246;SOR=0.687	GT:AD:DP:GQ:PL	"1/1:9,1680:1689:99:63762,4712,0"
NC_020431.seq	5414	NC_020431.seq__5414	G	A	3304140	.	AC=0;AF=0.089;AN=2;BaseQRankSum=-0.654;DP=1113458;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=32.35;ReadPosRankSum=-0.117;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	5432	NC_020431.seq__5432	A	C	2796110	.	AC=0;AF=0.058;AN=2;BaseQRankSum=1.61;DP=1112374;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=31.82;ReadPosRankSum=0.592;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	5447	NC_020431.seq__5447	G	A	32054700	.	AC=2;AF=0.618;AN=2;BaseQRankSum=-0.492;DP=1102066;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=472;MLEAF=0.618;MQ=60;MQRankSum=0;QD=29.61;ReadPosRankSum=-0.157;SOR=0.679	GT:AD:DP:GQ:PL	"1/1:7,1649:1656:99:60721,4708,0"
NC_020431.seq	5451	NC_020431.seq__5451	T	G	113306	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.667;DP=1086472;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30;ReadPosRankSum=1.09;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1666,0:1666:99:0,120,1800"
NC_020431.seq	5525	NC_020431.seq__5525	T	"*,G"	341639	.	"AC=0,0;AF=0.005236,0.005236;AN=2;BaseQRankSum=1.7;DP=1037967;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4,4;MLEAF=0.005236,0.005236;MQ=31.29;MQRankSum=0;QD=31.78;ReadPosRankSum=0.616;SOR=0.664"	GT:AD:DP:GQ:PL	"0/0:1493,0,0:1493:99:0,120,1800,120,1800,1800"
NC_020431.seq	5546	NC_020431.seq__5546	T	G	1364000	.	AC=0;AF=0.026;AN=2;BaseQRankSum=0.605;DP=1034643;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=31.86;ReadPosRankSum=0.367;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1493,0:1493:99:0,120,1800"
NC_020431.seq	5558	NC_020431.seq__5558	A	C	214519	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.786;DP=1024776;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.18;ReadPosRankSum=-1.557;SOR=0.535	GT:AD:DP:GQ:PL	"0/0:1493,0:1493:99:0,120,1800"
NC_020431.seq	5701	NC_020431.seq__5701	C	T	748482	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-1.349;DP=1024306;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=31.99;ReadPosRankSum=0.645;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1493,0:1493:99:0,120,1800"
NC_020431.seq	5798	NC_020431.seq__5798	C	"A,G"	25177600	.	"AC=2,0;AF=0.531,0.002618;AN=2;BaseQRankSum=0.111;DP=1028277;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406,2;MLEAF=0.531,0.002618;MQ=60;MQRankSum=0;QD=27.54;ReadPosRankSum=0.156;SOR=0.634"	GT:AD:DP:GQ:PL	"1/1:16,1505,0:1521:99:55787,3944,0,55835,4520,56412"
NC_020431.seq	5805	NC_020431.seq__5805	A	C	152323	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.49;DP=1030206;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.39;QD=34.14;ReadPosRankSum=1.07;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1527,0:1527:99:0,120,1800"
NC_020431.seq	5811	NC_020431.seq__5811	C	T	206385	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.081;DP=1029483;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.104;QD=25.4;ReadPosRankSum=-0.891;SOR=0.633	GT:AD:DP:GQ:PL	"0/0:1527,0:1527:99:0,120,1800"
NC_020431.seq	6027	NC_020431.seq__6027	T	C	308492	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.643;DP=980951;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.98;ReadPosRankSum=-0.239;SOR=0.53	GT:AD:DP:GQ:PL	"0/0:1490,0:1490:99:0,120,1800"
NC_020431.seq	6056	NC_020431.seq__6056	G	T	952202	.	AC=0;AF=0.022;AN=2;BaseQRankSum=0.981;DP=967374;ExcessHet=29.9159;FS=0;InbreedingCoeff=0.0002;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=31.53;ReadPosRankSum=0.167;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1503,0:1503:0:0,0,43959"
NC_020431.seq	6057	NC_020431.seq__6057	A	C	969124	.	AC=0;AF=0.022;AN=2;BaseQRankSum=-0.946;DP=967498;ExcessHet=29.3871;FS=0;InbreedingCoeff=0.0017;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=28.93;ReadPosRankSum=0.489;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1503,0:1503:0:0,0,43959"
NC_020431.seq	6063	NC_020431.seq__6063	T	G	270216	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=2.07;DP=938786;ExcessHet=0.185;FS=0;InbreedingCoeff=0.2257;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=-0.17;QD=28.8;ReadPosRankSum=-0.692;SOR=0.849	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	6075	NC_020431.seq__6075	C	T	250134	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.85;DP=933009;ExcessHet=0.0171;FS=0;InbreedingCoeff=0.5695;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=31.66;ReadPosRankSum=-0.931;SOR=0.788	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	6082	NC_020431.seq__6082	T	"G,*"	5318230	.	"AC=2,0;AF=0.123,0.005236;AN=2;BaseQRankSum=1.04;DP=931474;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94,4;MLEAF=0.123,0.005236;MQ=58.97;MQRankSum=0;QD=28.07;ReadPosRankSum=-0.364;SOR=0.652"	GT:AD:DP:GQ:PL	"1/1:25,1400,0:1425:99:51059,3342,0,51134,4201,51993"
NC_020431.seq	6095	NC_020431.seq__6095	C	"*,T"	424904	.	"AC=0,0;AF=0.005236,0.016;AN=2;BaseQRankSum=0.197;DP=926340;ExcessHet=0;FS=0;InbreedingCoeff=0.9792;MLEAC=4,12;MLEAF=0.005236,0.016;MQ=46.78;MQRankSum=0;QD=29.04;ReadPosRankSum=0.597;SOR=0.618"	GT:AD:DP:GQ:PL	"0/0:1434,0,0:1434:99:0,117,1755,117,1755,1755"
NC_020431.seq	6198	NC_020431.seq__6198	T	"*,G"	19338000	.	"AC=2,0;AF=0.518,0.013;AN=2;BaseQRankSum=1.89;DP=946701;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=396,10;MLEAF=0.518,0.013;MQ=7.8;MQRankSum=8.13;QD=31.35;ReadPosRankSum=0.926;SOR=0.621"	GT:AD:DP:GQ:PL	"1/1:12,1389,0:1401:99:51390,3640,0,51426,4178,51965"
NC_020431.seq	6223	NC_020431.seq__6223	G	A	1028660	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.583;DP=916233;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=28.93;ReadPosRankSum=-0.624;SOR=0.541	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6233	NC_020431.seq__6233	A	C	214355	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.234;DP=915765;ExcessHet=0;FS=1.668;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.52;ReadPosRankSum=-0.993;SOR=0.568	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6281	NC_020431.seq__6281	T	G	1388510	.	AC=0;AF=0.03;AN=2;BaseQRankSum=1.47;DP=919085;ExcessHet=-0;FS=0;InbreedingCoeff=0.9552;MLEAC=23;MLEAF=0.03;MQ=60;MQRankSum=0;QD=28.43;ReadPosRankSum=0.934;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6296	NC_020431.seq__6296	C	A	823702	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.159;DP=919239;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.83;ReadPosRankSum=0.343;SOR=0.671	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6333	NC_020431.seq__6333	A	C	279717	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.518;DP=919380;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.359;QD=27.64;ReadPosRankSum=3.47;SOR=0.85	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6341	NC_020431.seq__6341	T	"G,*"	669644	.	"AC=0,0;AF=0.002618,0.016;AN=2;BaseQRankSum=2.43;DP=920002;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=2,12;MLEAF=0.002618,0.016;MQ=32.14;MQRankSum=2.66;QD=31.92;ReadPosRankSum=-0.998;SOR=0.646"	GT:AD:DP:GQ:PL	"0/0:1411,0,0:1411:99:0,120,1800,120,1800,1800"
NC_020431.seq	6365	NC_020431.seq__6365	C	A	91392.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.617;DP=925152;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=-0.091;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1411,0:1411:99:0,120,1800"
NC_020431.seq	6389	NC_020431.seq__6389	T	C	22147900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.61;DP=903785;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=-0.031;QD=33.42;ReadPosRankSum=-0.453;SOR=0.691	GT:AD:DP:GQ:PL	"1/1:11,1205:1216:99:52053,3162,0"
NC_020431.seq	6402	NC_020431.seq__6402	T	G	50908.3	.	AC=0;AF=0.002625;AN=2;BaseQRankSum=1.56;DP=946108;ExcessHet=6.9887;FS=0;InbreedingCoeff=0.0178;MLEAC=2;MLEAF=0.002625;MQ=32.08;MQRankSum=15.32;QD=31.23;ReadPosRankSum=0.177;SOR=0.357	GT:AD:DP:GQ:PL	"0/0:1381,0:1381:0:0,0,39269"
NC_020431.seq	6447	NC_020431.seq__6447	G	A	1147260	.	AC=0;AF=0.021;AN=2;BaseQRankSum=-1.01;DP=941101;ExcessHet=0;FS=0;InbreedingCoeff=0.969;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=26.59;ReadPosRankSum=0.509;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1297,0:1297:99:0,120,1800"
NC_020431.seq	6457	NC_020431.seq__6457	T	G	130311	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.97;DP=939832;ExcessHet=0.0085;FS=1.297;InbreedingCoeff=0.7992;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.54;ReadPosRankSum=2.79;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1297,0:1297:99:0,120,1800"
NC_020431.seq	6564	NC_020431.seq__6564	A	"G,*"	422668	.	"AC=0,0;AF=0.005236,0.002618;AN=2;BaseQRankSum=0.312;DP=942477;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4,2;MLEAF=0.005236,0.002618;MQ=51.88;MQRankSum=0;QD=36.09;ReadPosRankSum=0.62;SOR=0.598"	GT:AD:DP:GQ:PL	"0/0:1297,0,0:1297:99:0,120,1800,120,1800,1800"
NC_020431.seq	6588	NC_020431.seq__6588	A	G	15872700	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.76;DP=1109323;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=17.06;MQRankSum=0;QD=27.76;ReadPosRankSum=1.26;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:19,0:1508:99:0,4498,19926"
NC_020431.seq	6611	NC_020431.seq__6611	T	G	231947	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.558;DP=1052670;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.16;ReadPosRankSum=0.015;SOR=0.415	GT:AD:DP:GQ:PL	"0/0:1663,0:1663:99:0,120,1800"
NC_020431.seq	6612	NC_020431.seq__6612	A	C	147652	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.28;DP=1053243;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.49;QD=34.84;ReadPosRankSum=1.02;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1663,0:1663:99:0,120,1800"
NC_020431.seq	6631	NC_020431.seq__6631	T	G	1099120	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.115;DP=1052938;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=26.67;ReadPosRankSum=-0.712;SOR=0.612	GT:AD:DP:GQ:PL	"0/0:1663,0:1663:99:0,120,1800"
NC_020431.seq	6692	NC_020431.seq__6692	T	C	26691500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.122;DP=1079669;ExcessHet=0;FS=0;InbreedingCoeff=0.9895;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.18;ReadPosRankSum=0.102;SOR=0.761	GT:AD:DP:GQ:PL	"1/1:9,1723:1735:99:63414,4863,0"
NC_020431.seq	6733	NC_020431.seq__6733	G	A	23.84	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.985;DP=1035442;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.002;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.19;ReadPosRankSum=-0.529;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1527,0:1527:99:0,120,1800"
NC_020431.seq	6763	NC_020431.seq__6763	T	C	506415	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.617;DP=1034459;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.36;ReadPosRankSum=-1.195;SOR=0.553	GT:AD:DP:GQ:PL	"0/0:1527,0:1527:99:0,120,1800"
NC_020431.seq	6809	NC_020431.seq__6809	T	A	274833	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1;DP=1034135;ExcessHet=0.0002;FS=2.081;InbreedingCoeff=0.7986;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.73;ReadPosRankSum=2.29;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1527,0:1527:99:0,120,1800"
NC_020431.seq	6879	NC_020431.seq__6879	A	G	26003800	.	AC=2;AF=0.535;AN=2;BaseQRankSum=-0.038;DP=1040934;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=409;MLEAF=0.535;MQ=60;MQRankSum=0;QD=30.45;ReadPosRankSum=0.081;SOR=0.641	GT:AD:DP:GQ:PL	"1/1:7,1544:1551:99:58623,4370,0"
NC_020431.seq	6964	NC_020431.seq__6964	T	G	163328	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.257;DP=1028514;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.3;ReadPosRankSum=-0.282;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1509,0:1509:99:0,120,1800"
NC_020431.seq	6992	NC_020431.seq__6992	T	G	410357	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.08;DP=1028455;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.48;ReadPosRankSum=-0.62;SOR=0.608	GT:AD:DP:GQ:PL	"0/0:1509,0:1509:99:0,120,1800"
NC_020431.seq	7025	NC_020431.seq__7025	A	T	339055	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.26;DP=1028251;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.74;ReadPosRankSum=0.174;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1509,0:1509:99:0,120,1800"
NC_020431.seq	7028	NC_020431.seq__7028	G	A	309723	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.625;DP=1028792;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.069;QD=32.31;ReadPosRankSum=0.1;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1509,0:1509:99:0,120,1800"
NC_020431.seq	7106	NC_020431.seq__7106	G	A	811235	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.146;DP=1020770;ExcessHet=-0;FS=0;InbreedingCoeff=0.946;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=29.87;ReadPosRankSum=0.416;SOR=0.6	GT:AD:DP:GQ:PL	"0/0:1523,0:1523:99:0,120,1800"
NC_020431.seq	7121	NC_020431.seq__7121	C	T	72150.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.85;DP=1019682;ExcessHet=3.0103;FS=0.523;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=16.35;ReadPosRankSum=2.3;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1523,0:1523:99:0,120,1800"
NC_020431.seq	7131	NC_020431.seq__7131	A	G	1662100	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.233;DP=1026205;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.3;ReadPosRankSum=-0.09;SOR=0.598	GT:AD:DP:GQ:PL	"0/0:1523,0:1523:99:0,120,1800"
NC_020431.seq	7159	NC_020431.seq__7159	A	G	24843500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.031;DP=1033836;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=-0.073;SOR=0.667	GT:AD:DP:GQ:PL	"1/1:18,1552:1570:99:57349,3957,0"
NC_020431.seq	7246	NC_020431.seq__7246	A	G	421199	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.912;DP=1032695;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.24;ReadPosRankSum=0.851;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	7261	NC_020431.seq__7261	T	G	170843	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.16;DP=1032965;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.98;ReadPosRankSum=1.38;SOR=0.467	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	7325	NC_020431.seq__7325	A	C	186554	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.1;DP=1027335;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.021;QD=29.25;ReadPosRankSum=0.647;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7357	NC_020431.seq__7357	C	T	329485	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.923;DP=1027461;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.92;ReadPosRankSum=-0.621;SOR=0.616	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7372	NC_020431.seq__7372	C	T	326119	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.12;DP=1027205;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.73;ReadPosRankSum=0.407;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7389	NC_020431.seq__7389	G	C	4967600	.	AC=0;AF=0.186;AN=2;BaseQRankSum=-0.352;DP=1039174;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=28.22;ReadPosRankSum=-0.269;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7420	NC_020431.seq__7420	A	C	295766	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=6.45;DP=1033997;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.007;QD=30.25;ReadPosRankSum=0.763;SOR=0.778	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7503	NC_020431.seq__7503	C	T	726881	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.726;DP=1034046;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.9;ReadPosRankSum=-0.176;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1538,0:1538:99:0,120,1800"
NC_020431.seq	7574	NC_020431.seq__7574	T	G	24940400	.	AC=2;AF=0.531;AN=2;BaseQRankSum=1.77;DP=1047942;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=34.67;ReadPosRankSum=0.262;SOR=0.736	GT:AD:DP:GQ:PL	"1/1:16,1512:1528:99:56797,4005,0"
NC_020431.seq	7584	NC_020431.seq__7584	T	A	82919	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.367;DP=1044600;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=-0.068;QD=32.28;ReadPosRankSum=-0.573;SOR=0.125	GT:AD:DP:GQ:PL	"0/0:1497,0:1497:99:0,120,1800"
NC_020431.seq	7609	NC_020431.seq__7609	A	C	156169	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.531;DP=1044503;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.29;ReadPosRankSum=0.488;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1497,0:1497:99:0,120,1800"
NC_020431.seq	7660	NC_020431.seq__7660	G	A	42718000	.	AC=2;AF=0.89;AN=2;BaseQRankSum=-0.222;DP=1065947;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=30.3;ReadPosRankSum=0.1;SOR=0.747	GT:AD:DP:GQ:PL	"1/1:0,1483:1483:99:66173,4547,0"
NC_020431.seq	7679	NC_020431.seq__7679	T	C	25686600	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.375;DP=1030827;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=37.71;ReadPosRankSum=0.117;SOR=0.765	GT:AD:DP:GQ:PL	"1/1:13,1462:1476:99:54742,3918,0"
NC_020431.seq	7690	NC_020431.seq__7690	C	T	290479	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.82;DP=1008283;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.52;ReadPosRankSum=1.58;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7691	NC_020431.seq__7691	A	C	913112	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.195;DP=1008261;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.32;ReadPosRankSum=0.193;SOR=0.753	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7707	NC_020431.seq__7707	C	T	857763	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.97;DP=1008090;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=35.16;ReadPosRankSum=1.17;SOR=0.801	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7729	NC_020431.seq__7729	T	C	90800.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.66;DP=1007168;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.69;ReadPosRankSum=-0.163;SOR=0.535	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7775	NC_020431.seq__7775	A	C	148666	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.49;DP=1007212;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=29.03;ReadPosRankSum=0.319;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7800	NC_020431.seq__7800	G	A	335370	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.03;DP=1007224;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.009;QD=29.23;ReadPosRankSum=2.98;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7807	NC_020431.seq__7807	T	G	279138	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.423;DP=1007285;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.85;ReadPosRankSum=3.22;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7854	NC_020431.seq__7854	T	G	340424	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.1;DP=1007000;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.062;QD=30.59;ReadPosRankSum=0.615;SOR=0.568	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	7855	NC_020431.seq__7855	G	T	100844	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.93;DP=1006762;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.9;ReadPosRankSum=1.71;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	8085	NC_020431.seq__8085	C	A	174349	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.99;DP=1005632;ExcessHet=0.0425;FS=0;InbreedingCoeff=0.4201;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=-1.281;SOR=0.755	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	8138	NC_020431.seq__8138	C	A	46824	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.14;DP=1005695;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=59.96;MQRankSum=14.18;QD=27.62;ReadPosRankSum=0.073;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	8145	NC_020431.seq__8145	T	G	222100	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=12.87;DP=1005386;ExcessHet=0;FS=5.936;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=59.98;MQRankSum=13.79;QD=31.67;ReadPosRankSum=4.19;SOR=0.486	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	8158	NC_020431.seq__8158	G	"T,*"	327721	.	"AC=0,0;AF=0.002618,0.016;AN=2;BaseQRankSum=3.23;DP=986274;ExcessHet=0;FS=0;InbreedingCoeff=0.9763;MLEAC=2,12;MLEAF=0.002618,0.016;MQ=35.35;MQRankSum=4.41;QD=29.6;ReadPosRankSum=3.46;SOR=0.73"	GT:AD:DP:GQ:PL	"0/0:1549,0,0:1549:99:0,120,1800,120,1800,1800"
NC_020431.seq	8172	NC_020431.seq__8172	A	C	156547	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.87;DP=985913;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.56;QD=25.72;ReadPosRankSum=1.86;SOR=0.43	GT:AD:DP:GQ:PL	"0/0:1549,0:1549:99:0,120,1800"
NC_020431.seq	8186	NC_020431.seq__8186	A	C	4624940	.	AC=0;AF=0.185;AN=2;BaseQRankSum=3.25;DP=990410;ExcessHet=-0;FS=4.325;InbreedingCoeff=0.9913;MLEAC=141;MLEAF=0.185;MQ=59.97;MQRankSum=9.85;QD=34.69;ReadPosRankSum=1.4;SOR=0.155	GT:AD:DP:GQ:PL	"0/0:1549,0:1549:99:0,120,1800"
NC_020431.seq	8201	NC_020431.seq__8201	A	C	204525	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.95;DP=939082;ExcessHet=0.0028;FS=3.401;InbreedingCoeff=0.8493;MLEAC=2;MLEAF=0.002618;MQ=58.15;MQRankSum=6.88;QD=32.48;ReadPosRankSum=1.63;SOR=0.225	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:27:0,27,405"
NC_020431.seq	8339	NC_020431.seq__8339	A	G	488461	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.28;DP=922122;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.37;ReadPosRankSum=2.35;SOR=0.62	GT:AD:DP:GQ:PL	"0/0:1454,0:1454:99:0,120,1800"
NC_020431.seq	8452	NC_020431.seq__8452	G	A	22682700	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.657;DP=934102;ExcessHet=0;FS=0;InbreedingCoeff=0.9987;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=-0.131;SOR=0.677	GT:AD:DP:GQ:PL	"1/1:12,1582:1595:99:58498,4242,0"
NC_020431.seq	8527	NC_020431.seq__8527	A	C	510113	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.705;DP=916791;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=35.4;ReadPosRankSum=0.775;SOR=1.034	GT:AD:DP:GQ:PL	"0/0:1556,0:1556:99:0,120,1800"
NC_020431.seq	8549	NC_020431.seq__8549	T	C	139557	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.273;DP=916425;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=2.9;SOR=0.806	GT:AD:DP:GQ:PL	"0/0:1556,0:1556:99:0,120,1800"
NC_020431.seq	8583	NC_020431.seq__8583	A	C	266132	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.82;DP=847681;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.55;ReadPosRankSum=1.49;SOR=0.979	GT:AD:DP:GQ:PL	"0/0:1295,0:1295:99:0,120,1800"
NC_020431.seq	8631	NC_020431.seq__8631	A	T	1288330	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.372;DP=819367;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.56;ReadPosRankSum=0.104;SOR=0.86	GT:AD:DP:GQ:PL	"0/0:1295,0:1295:99:0,120,1800"
NC_020431.seq	8684	NC_020431.seq__8684	T	G	949318	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.559;DP=809680;ExcessHet=0;FS=0;InbreedingCoeff=0.9723;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=32.87;ReadPosRankSum=0.998;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1295,0:1295:99:0,120,1800"
NC_020431.seq	8700	NC_020431.seq__8700	T	G	113521	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.76;DP=809712;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.62;ReadPosRankSum=0.915;SOR=0.248	GT:AD:DP:GQ:PL	"0/0:1295,0:1295:99:0,120,1800"
NC_020431.seq	8735	NC_020431.seq__8735	T	C	537777	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-1.301;DP=698068;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=18;MLEAF=0.024;MQ=59.98;MQRankSum=-0.27;QD=33.52;ReadPosRankSum=0.246;SOR=0.774	GT:AD:DP:GQ:PL	"0/0:1063,0:1063:99:0,120,1800"
NC_020431.seq	8774	NC_020431.seq__8774	C	T	6616.48	.	AC=0;AF=0.2;AN=0;BaseQRankSum=-0.892;DP=594690;ExcessHet=0.3218;FS=0;MLEAC=2;MLEAF=0.2;MQ=1.08;MQRankSum=0;QD=27.36;ReadPosRankSum=-0.54;SOR=0.525	GT:AD:DP:PL	"./.:842,0:842:0,0,0"
NC_020431.seq	8804	NC_020431.seq__8804	T	G	179954	.	AC=0;AF=0.023;AN=0;BaseQRankSum=0.702;DP=593982;ExcessHet=132.776;FS=0;InbreedingCoeff=-0.2413;MLEAC=89;MLEAF=0.147;MQ=13.83;MQRankSum=0;QD=30.63;ReadPosRankSum=-0.591;SOR=0.997	GT:AD:DP:PL	"./.:829,0:829:0,0,0"
NC_020431.seq	8819	NC_020431.seq__8819	T	C	125147	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.448;DP=723179;ExcessHet=0.0002;FS=0;InbreedingCoeff=0.7962;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.62;ReadPosRankSum=1.57;SOR=0.866	GT:AD:DP:GQ:PL	"0/0:1007,0:1007:99:0,120,1800"
NC_020431.seq	8946	NC_020431.seq__8946	C	T	135417	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.01;DP=722688;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.28;ReadPosRankSum=-1.558;SOR=0.64	GT:AD:DP:GQ:PL	"0/0:950,0:950:99:0,120,1800"
NC_020431.seq	9026	NC_020431.seq__9026	G	A	24400800	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.141;DP=924209;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=34.51;ReadPosRankSum=-0.066;SOR=0.716	GT:AD:DP:GQ:PL	"1/1:11,1505:1516:99:56324,4134,0"
NC_020431.seq	9095	NC_020431.seq__9095	T	C	156333	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.86;DP=922491;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.006;QD=29.49;ReadPosRankSum=-1.296;SOR=0.453	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9098	NC_020431.seq__9098	G	A	198140	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.699;DP=922916;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.119;QD=28.72;ReadPosRankSum=-0.443;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9120	NC_020431.seq__9120	T	G	123342	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.624;DP=924294;ExcessHet=0.0028;FS=2.081;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=21.26;ReadPosRankSum=-1.329;SOR=0.473	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9142	NC_020431.seq__9142	T	G	218875	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.794;DP=924665;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.088;QD=25.19;ReadPosRankSum=-0.457;SOR=0.622	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9229	NC_020431.seq__9229	A	C	1746420	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.05;DP=948572;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=32.55;ReadPosRankSum=0.076;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9258	NC_020431.seq__9258	T	G	1676550	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.78;DP=961047;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=30.16;ReadPosRankSum=0.64;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9285	NC_020431.seq__9285	G	A	206671	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.405;DP=956499;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.01;ReadPosRankSum=-0.552;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9314	NC_020431.seq__9314	G	A	607205	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.129;DP=957405;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=33.45;ReadPosRankSum=-0.433;SOR=0.564	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9529	NC_020431.seq__9529	T	G	46227	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.81;DP=956474;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.5;ReadPosRankSum=-0.124;SOR=0.574	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9596	NC_020431.seq__9596	C	T	298989	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.398;DP=957097;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=34.17;ReadPosRankSum=1.58;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9658	NC_020431.seq__9658	T	C	2024600	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.103;DP=976502;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=30.69;ReadPosRankSum=0.211;SOR=0.769	GT:AD:DP:GQ:PL	"0/0:1530,0:1530:99:0,120,1800"
NC_020431.seq	9688	NC_020431.seq__9688	G	"A,T"	943803	.	"AC=0,0;AF=0.01,0.002618;AN=2;BaseQRankSum=1.06;DP=1089518;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8,2;MLEAF=0.01,0.002618;MQ=60;MQRankSum=0;QD=29.35;ReadPosRankSum=-0.005;SOR=0.7"	GT:AD:DP:GQ:PL	"0/0:1684,0,0:1684:99:0,120,1800,120,1800,1800"
NC_020431.seq	9702	NC_020431.seq__9702	G	T	303317	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.75;DP=1088108;ExcessHet=0;FS=1.668;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.109;QD=31.58;ReadPosRankSum=1.34;SOR=0.529	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9794	NC_020431.seq__9794	A	G	110893	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.099;DP=1087178;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.74;ReadPosRankSum=-0.647;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9835	NC_020431.seq__9835	C	T	332105	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.607;DP=1087308;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.46;ReadPosRankSum=0.059;SOR=0.457	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9853	NC_020431.seq__9853	C	T	1687590	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.121;DP=1091139;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=0.518;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9935	NC_020431.seq__9935	C	T	321798	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.43;DP=1086012;ExcessHet=0;FS=3.099;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.35;ReadPosRankSum=1.17;SOR=0.376	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9949	NC_020431.seq__9949	T	G	170025	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.207;DP=1085135;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.61;ReadPosRankSum=-0.465;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9969	NC_020431.seq__9969	C	A	97647	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.58;DP=1084633;ExcessHet=0.0028;FS=1.42;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.41;ReadPosRankSum=-1.25;SOR=0.398	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	9993	NC_020431.seq__9993	A	G	212331	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.993;DP=1084550;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.4;ReadPosRankSum=-0.578;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	10008	NC_020431.seq__10008	T	C	2703410	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.289;DP=1086790;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=30.2;ReadPosRankSum=-0.109;SOR=0.647	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	10026	NC_020431.seq__10026	T	G	85468	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.5;DP=1078161;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.98;ReadPosRankSum=0.413;SOR=0.741	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	10031	NC_020431.seq__10031	A	C	499540	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.76;DP=1078582;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=0.237;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1684,0:1684:99:0,120,1800"
NC_020431.seq	10036	NC_020431.seq__10036	A	T	1871140	.	AC=2;AF=0.029;AN=2;BaseQRankSum=0.564;DP=1080287;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=25.65;ReadPosRankSum=-0.297;SOR=0.739	GT:AD:DP:GQ:PL	"1/1:40,1624:1664:99:46445,3443,0"
NC_020431.seq	10065	NC_020431.seq__10065	G	A	327399	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.351;DP=1079396;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=24.13;ReadPosRankSum=0.031;SOR=0.47	GT:AD:DP:GQ:PL	"0/0:1702,0:1702:99:0,120,1800"
NC_020431.seq	10100	NC_020431.seq__10100	C	T	6575600	.	AC=2;AF=0.123;AN=2;BaseQRankSum=0.43;DP=1083326;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=28.35;ReadPosRankSum=-0.285;SOR=0.698	GT:AD:DP:GQ:PL	"1/1:37,1663:1702:99:60760,3669,0"
NC_020431.seq	10136	NC_020431.seq__10136	T	G	1674260	.	AC=0;AF=0.065;AN=2;BaseQRankSum=0.691;DP=1066904;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=50;MLEAF=0.065;MQ=60;MQRankSum=0;QD=31.38;ReadPosRankSum=0.545;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	10221	NC_020431.seq__10221	A	G	283310	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.48;DP=1064767;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.52;ReadPosRankSum=2.27;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	10234	NC_020431.seq__10234	T	C	1205890	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.753;DP=1064508;ExcessHet=0;FS=2.107;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.39;ReadPosRankSum=0.13;SOR=0.612	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	10533	NC_020431.seq__10533	T	G	197458	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.112;DP=1062036;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.74;ReadPosRankSum=0.834;SOR=0.459	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	10629	NC_020431.seq__10629	T	G	199975	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.66;DP=1062218;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.04;ReadPosRankSum=-0.727;SOR=0.579	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	10944	NC_020431.seq__10944	T	G	60266	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.378;DP=1061879;ExcessHet=0.0028;FS=3.189;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.12;ReadPosRankSum=1.39;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	11109	NC_020431.seq__11109	A	C	194357	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.44;DP=1061913;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.69;ReadPosRankSum=0.04;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1417,0:1417:99:0,120,1800"
NC_020431.seq	11211	NC_020431.seq__11211	A	G	25648800	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.376;DP=1087822;ExcessHet=0;FS=0;InbreedingCoeff=0.9989;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.88;ReadPosRankSum=-0.002;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:7,1473:1482:99:55442,4171,0"
NC_020431.seq	11265	NC_020431.seq__11265	T	C	49184	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.779;DP=1084447;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.72;ReadPosRankSum=1.31;SOR=0.59	GT:AD:DP:GQ:PL	"0/0:1502,0:1502:99:0,117,1755"
NC_020431.seq	11355	NC_020431.seq__11355	T	G	316456	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.492;DP=1084460;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=23.22;ReadPosRankSum=0.426;SOR=0.616	GT:AD:DP:GQ:PL	"0/0:1502,0:1502:99:0,117,1755"
NC_020431.seq	11611	NC_020431.seq__11611	T	"A,*"	2187180	.	"AC=0,0;AF=0.018,0.044;AN=2;BaseQRankSum=0.202;DP=1092330;ExcessHet=0;FS=0;InbreedingCoeff=0.9492;MLEAC=10,30;MLEAF=0.015,0.044;MQ=17.91;MQRankSum=0.06;QD=30.54;ReadPosRankSum=0.753;SOR=0.781"	GT:AD:DP:GQ:PL	"0/0:1520,0,0:1520:99:0,120,1800,120,1800,1800"
NC_020431.seq	11674	NC_020431.seq__11674	C	T	1121490	.	AC=0;AF=0.039;AN=2;BaseQRankSum=0.369;DP=1038327;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=27.28;ReadPosRankSum=0.519;SOR=0.717	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	11844	NC_020431.seq__11844	T	G	581179	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.11;DP=1040806;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=-0.244;SOR=0.556	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	11872	NC_020431.seq__11872	T	G	178947	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.151;DP=1041011;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.046;QD=33.8;ReadPosRankSum=1.19;SOR=0.463	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	11964	NC_020431.seq__11964	C	T	581942	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.149;DP=1042808;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=26.49;ReadPosRankSum=-0.177;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	11988	NC_020431.seq__11988	T	A	101215	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.02;DP=1043145;ExcessHet=0;FS=0;InbreedingCoeff=0.9993;MLEAC=6;MLEAF=0.007853;MQ=59.99;MQRankSum=0;QD=32.64;ReadPosRankSum=-0.344;SOR=0.618	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	12012	NC_020431.seq__12012	A	C	496594	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.357;DP=1043321;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=28.45;ReadPosRankSum=0.54;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	12028	NC_020431.seq__12028	C	T	1041770	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.419;DP=1046042;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=32.06;ReadPosRankSum=-0.616;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	12049	NC_020431.seq__12049	A	C	312237	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.58;DP=1045461;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.01;ReadPosRankSum=-0.182;SOR=0.563	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	12086	NC_020431.seq__12086	C	T	590982	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.19;DP=1045592;ExcessHet=0;FS=0;InbreedingCoeff=0.9993;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=31.24;ReadPosRankSum=1.83;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1467,0:1467:99:0,120,1800"
NC_020431.seq	12253	NC_020431.seq__12253	T	C	290000	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.129;DP=1077145;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=7.87;QD=28.41;ReadPosRankSum=2.64;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1660,0:1660:99:0,120,1800"
NC_020431.seq	12291	NC_020431.seq__12291	A	T	20341100	.	AC=2;AF=0.697;AN=2;BaseQRankSum=0.493;DP=1133152;ExcessHet=0;FS=0;InbreedingCoeff=0.6872;MLEAC=539;MLEAF=0.77;MQ=56.08;MQRankSum=0;QD=29.88;ReadPosRankSum=0.865;SOR=0.714	GT:AD:DP:GQ:PL	"1/1:16,1488:1504:99:43751,4047,0"
NC_020431.seq	12292	NC_020431.seq__12292	A	T	7087310	.	AC=0;AF=0.241;AN=2;BaseQRankSum=0.697;DP=1144662;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=184;MLEAF=0.241;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=0.862;SOR=0.727	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	12293	NC_020431.seq__12293	A	T	1273940	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.852;DP=1154151;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=30.06;ReadPosRankSum=0.925;SOR=0.78	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	12295	NC_020431.seq__12295	A	T	164455	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.016;DP=1154296;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.96;ReadPosRankSum=2;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	12340	NC_020431.seq__12340	A	C	174137	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.615;DP=1154507;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.52;ReadPosRankSum=-0.878;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	12357	NC_020431.seq__12357	A	G	27564000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-1.037;DP=1159640;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26.53;ReadPosRankSum=-0.104;SOR=0.643	GT:AD:DP:GQ:PL	"1/1:7,1661:1668:99:61443,4749,0"
NC_020431.seq	12363	NC_020431.seq__12363	T	G	2636930	.	AC=0;AF=0.058;AN=2;BaseQRankSum=2.17;DP=1149751;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=31.52;ReadPosRankSum=0.578;SOR=0.542	GT:AD:DP:GQ:PL	"0/0:1625,0:1625:99:0,114,1710"
NC_020431.seq	12404	NC_020431.seq__12404	A	C	356401	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.92;DP=1147564;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.077;QD=30.65;ReadPosRankSum=1.03;SOR=0.724	GT:AD:DP:GQ:PL	"0/0:1625,0:1625:99:0,114,1710"
NC_020431.seq	12429	NC_020431.seq__12429	T	A	433826	.	AC=0;AF=0.4;AN=0;BaseQRankSum=-0.266;DP=1101741;ExcessHet=0.1047;FS=0;MLEAC=4;MLEAF=0.4;MQ=6.08;MQRankSum=0;QD=29.76;ReadPosRankSum=1.74;SOR=0.829	GT:AD:DP:PL	"./.:1537,0:1537:0,0,0"
NC_020431.seq	12460	NC_020431.seq__12460	G	A	874213	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.703;DP=1081622;ExcessHet=0;FS=0;InbreedingCoeff=0.9801;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=32.91;ReadPosRankSum=-0.49;SOR=0.789	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	12488	NC_020431.seq__12488	T	G	3226160	.	AC=0;AF=0.088;AN=2;BaseQRankSum=0.502;DP=1082569;ExcessHet=-0;FS=0;InbreedingCoeff=0.9756;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=28.12;ReadPosRankSum=-0.286;SOR=0.807	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	12705	NC_020431.seq__12705	A	C	631259	.	AC=0;AF=0.01;AN=2;BaseQRankSum=3.81;DP=1080759;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=23.99;ReadPosRankSum=1.17;SOR=0.784	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	12865	NC_020431.seq__12865	T	C	113669	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.046;DP=1080126;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.24;ReadPosRankSum=-0.46;SOR=0.487	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	12891	NC_020431.seq__12891	A	G	1627700	.	AC=0;AF=0.042;AN=2;BaseQRankSum=-0.569;DP=1084216;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=32;MLEAF=0.042;MQ=60;MQRankSum=0;QD=27.31;ReadPosRankSum=0.565;SOR=0.709	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	12961	NC_020431.seq__12961	T	C	253874	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.658;DP=1079908;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.8565;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.195;QD=23.94;ReadPosRankSum=0.795;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1543,0:1543:99:0,120,1800"
NC_020431.seq	13019	NC_020431.seq__13019	A	C	104326	.	AC=0;AF=0.002625;AN=2;BaseQRankSum=0.022;DP=1082172;ExcessHet=0.0029;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002625;MQ=36.04;MQRankSum=0;QD=25.11;ReadPosRankSum=0.668;SOR=0.56	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13036	NC_020431.seq__13036	G	C	271544	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.845;DP=1081460;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.95;ReadPosRankSum=-0.365;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13070	NC_020431.seq__13070	A	C	282412	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.39;DP=1081293;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.27;ReadPosRankSum=-0.412;SOR=0.558	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13080	NC_020431.seq__13080	C	G	369790	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.284;DP=1081329;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=27.65;ReadPosRankSum=-0.256;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13092	NC_020431.seq__13092	A	G	844695	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.778;DP=1080634;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.011;QD=34.85;ReadPosRankSum=0.295;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13117	NC_020431.seq__13117	A	C	188024	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.52;DP=1079623;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.053;QD=27.57;ReadPosRankSum=0.416;SOR=0.592	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13181	NC_020431.seq__13181	G	C	1066150	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.955;DP=1079550;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.16;ReadPosRankSum=-0.165;SOR=0.579	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13276	NC_020431.seq__13276	A	C	1195820	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.18;DP=1079433;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.67;ReadPosRankSum=1.07;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13375	NC_020431.seq__13375	C	T	43505	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.273;DP=1078778;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.46;ReadPosRankSum=0.384;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13546	NC_020431.seq__13546	C	T	209762	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.49;DP=1079222;ExcessHet=0.0028;FS=1.724;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.063;QD=27.76;ReadPosRankSum=0.243;SOR=0.696	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13582	NC_020431.seq__13582	T	G	169917	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.513;DP=1079614;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.029;QD=30.88;ReadPosRankSum=-1.6;SOR=0.561	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13751	NC_020431.seq__13751	G	A	182407	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.216;DP=1080040;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.058;QD=29.58;ReadPosRankSum=0.74;SOR=0.671	GT:AD:DP:GQ:PL	"0/0:1526,0:1526:99:0,120,1800"
NC_020431.seq	13758	NC_020431.seq__13758	T	C	28164400	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.426;DP=1157362;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=0.11;SOR=0.664	GT:AD:DP:GQ:PL	"1/1:20,1797:1817:99:68256,4623,0"
NC_020431.seq	13769	NC_020431.seq__13769	A	C	186922	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.64;DP=1123406;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.019;QD=33.97;ReadPosRankSum=0.283;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13786	NC_020431.seq__13786	A	C	157509	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.136;DP=1123408;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.019;QD=32.3;ReadPosRankSum=1.35;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13863	NC_020431.seq__13863	T	G	193173	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.187;DP=1123582;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.17;ReadPosRankSum=1.5;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13890	NC_020431.seq__13890	C	G	3503590	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.763;DP=1125457;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=30.53;ReadPosRankSum=0.548;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13904	NC_020431.seq__13904	C	T	257237	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.868;DP=1125557;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.015;QD=25.57;ReadPosRankSum=0.974;SOR=0.767	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13927	NC_020431.seq__13927	T	G	155837	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.82;DP=1125445;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.07;ReadPosRankSum=1.68;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13940	NC_020431.seq__13940	T	G	4478150	.	AC=0;AF=0.105;AN=2;BaseQRankSum=1.14;DP=1125422;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=80;MLEAF=0.105;MQ=60;MQRankSum=0;QD=32.59;ReadPosRankSum=0.364;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13950	NC_020431.seq__13950	A	C	214945	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.87;DP=1116829;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.07;QD=33.09;ReadPosRankSum=-0.073;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13980	NC_020431.seq__13980	T	A	8025.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.544;DP=1115296;ExcessHet=3.0103;FS=7.542;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0.438;QD=3.67;ReadPosRankSum=-23.9;SOR=1.412	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	13983	NC_020431.seq__13983	A	T	8156.86	.	AC=0;AF=0.00133;AN=2;BaseQRankSum=3.59;DP=1106873;ExcessHet=3.0103;FS=11.725;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.00133;MQ=17.92;MQRankSum=0;QD=15.25;ReadPosRankSum=-6.758;SOR=1.428	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14064	NC_020431.seq__14064	A	C	237992	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.32;DP=1100104;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.79;ReadPosRankSum=2.05;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14070	NC_020431.seq__14070	G	A	315462	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.725;DP=1100849;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.8879;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.19;ReadPosRankSum=1.59;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14075	NC_020431.seq__14075	C	A	87.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.789;DP=1099958;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0016;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=2.93;ReadPosRankSum=-0.662;SOR=0.846	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14079	NC_020431.seq__14079	A	C	433765	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.513;DP=1100087;ExcessHet=0.0002;FS=0;InbreedingCoeff=0.784;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.11;ReadPosRankSum=0.236;SOR=0.717	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14090	NC_020431.seq__14090	T	C	1158760	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.553;DP=1103514;ExcessHet=0;FS=0;InbreedingCoeff=0.9735;MLEAC=14;MLEAF=0.018;MQ=60.12;MQRankSum=0;QD=28.99;ReadPosRankSum=0.803;SOR=0.709	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14096	NC_020431.seq__14096	A	G	805211	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.176;DP=1103446;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=36.25;ReadPosRankSum=-0.19;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14107	NC_020431.seq__14107	T	G	298.04	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.17;DP=1101077;ExcessHet=3.0445;FS=2.216;InbreedingCoeff=-0.0046;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=3.51;ReadPosRankSum=0.297;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14161	NC_020431.seq__14161	A	C	1762270	.	AC=0;AF=0.05;AN=2;BaseQRankSum=0.53;DP=1100368;ExcessHet=-0;FS=0;InbreedingCoeff=0.9599;MLEAC=38;MLEAF=0.05;MQ=60;MQRankSum=0;QD=30.41;ReadPosRankSum=0.168;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14186	NC_020431.seq__14186	A	T	278.06	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.777;DP=1098842;ExcessHet=3.0444;FS=3.114;InbreedingCoeff=-0.0039;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=6.95;ReadPosRankSum=-1.225;SOR=1.235	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14191	NC_020431.seq__14191	G	A	283.06	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.27;DP=1098850;ExcessHet=3.0444;FS=0;InbreedingCoeff=-0.0039;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=-0.727;SOR=0.737	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14192	NC_020431.seq__14192	G	C	207253	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.059;DP=1099343;ExcessHet=0.0283;FS=0;InbreedingCoeff=0.5694;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.063;QD=27.7;ReadPosRankSum=-0.106;SOR=0.46	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14270	NC_020431.seq__14270	T	G	88687.2	.	AC=0;AF=0.002632;AN=2;BaseQRankSum=0.653;DP=1099505;ExcessHet=0.0597;FS=0;InbreedingCoeff=0.4411;MLEAC=2;MLEAF=0.002632;MQ=58.71;MQRankSum=-0.436;QD=34.49;ReadPosRankSum=-0.645;SOR=0.766	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14321	NC_020431.seq__14321	T	"G,*"	921125	.	"AC=0,0;AF=0.013,0.002618;AN=2;BaseQRankSum=0.072;DP=1097257;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10,2;MLEAF=0.013,0.002618;MQ=57.56;MQRankSum=0;QD=31.92;ReadPosRankSum=-0.057;SOR=0.589"	GT:AD:DP:GQ:PL	"0/0:1634,0,0:1634:99:0,120,1800,120,1800,1800"
NC_020431.seq	14345	NC_020431.seq__14345	T	G	4848290	.	AC=0;AF=0.099;AN=2;BaseQRankSum=1.52;DP=1096958;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=28.49;ReadPosRankSum=0.433;SOR=0.577	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	14353	NC_020431.seq__14353	A	C	25593700	.	AC=2;AF=0.537;AN=2;BaseQRankSum=5.14;DP=1095408;ExcessHet=-0;FS=3.011;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=31.74;ReadPosRankSum=2.22;SOR=0.187	GT:AD:DP:GQ:PL	"1/1:24,1576:1600:99:57187,4282,0"
NC_020431.seq	14409	NC_020431.seq__14409	C	T	54559	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.525;DP=1077288;ExcessHet=0.0028;FS=1.889;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.99;ReadPosRankSum=0.68;SOR=1.198	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14434	NC_020431.seq__14434	C	T	142692	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.948;DP=1077555;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.41;ReadPosRankSum=-0.725;SOR=0.832	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14510	NC_020431.seq__14510	C	T	1080900	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.223;DP=1078018;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=27.59;ReadPosRankSum=0.076;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14555	NC_020431.seq__14555	C	T	1247770	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.339;DP=1078446;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.55;ReadPosRankSum=-0.138;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14819	NC_020431.seq__14819	A	C	356217	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.82;DP=1076725;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.73;ReadPosRankSum=1.34;SOR=0.407	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14870	NC_020431.seq__14870	A	G	2070200	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.28;DP=1100709;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.92;ReadPosRankSum=0.165;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	14893	NC_020431.seq__14893	T	G	300286	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.19;DP=1099968;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.65;ReadPosRankSum=0.584;SOR=0.532	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	15051	NC_020431.seq__15051	C	T	136235	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.24;DP=1099854;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.99;ReadPosRankSum=-0.314;SOR=0.471	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	15182	NC_020431.seq__15182	T	A	47616900	.	AC=2;AF=1;AN=2;BaseQRankSum=2.4;DP=1158398;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=0;QD=32.53;ReadPosRankSum=0.887;SOR=0.274	GT:AD:DP:GQ:PL	"1/1:0,1755:1755:99:77564,5353,0"
NC_020431.seq	15207	NC_020431.seq__15207	T	G	5686620	.	AC=0;AF=0.131;AN=2;BaseQRankSum=0.386;DP=1134986;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=100;MLEAF=0.131;MQ=60;MQRankSum=0;QD=27.76;ReadPosRankSum=0.017;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	15225	NC_020431.seq__15225	T	C	96412.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.187;DP=1137736;ExcessHet=0;FS=2.107;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.68;ReadPosRankSum=0.335;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	15235	NC_020431.seq__15235	C	T	359615	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.408;DP=1136928;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.094;QD=34.56;ReadPosRankSum=0.617;SOR=0.5	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	15261	NC_020431.seq__15261	C	T	209102	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.801;DP=1136906;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.92;ReadPosRankSum=-0.433;SOR=0.443	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	15274	NC_020431.seq__15274	A	G	145216	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.533;DP=1149058;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.7864;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.54;ReadPosRankSum=-1.414;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:1856,0:1856:45:0,45,675"
NC_020431.seq	15278	NC_020431.seq__15278	T	"*,C"	21893300	.	"AC=2,0;AF=0.539,0.002618;AN=2;BaseQRankSum=0.222;DP=1144034;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=412,2;MLEAF=0.539,0.002618;MQ=4.79;MQRankSum=0;QD=31.64;ReadPosRankSum=2.19;SOR=0.721"	GT:AD:DP:GQ:PL	"1/1:12,1725,0:1737:99:54721,4847,0,54757,5191,55101"
NC_020431.seq	15344	NC_020431.seq__15344	G	C	161702	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.98;DP=1094019;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.019;QD=31.23;ReadPosRankSum=-0.26;SOR=0.774	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15351	NC_020431.seq__15351	T	G	303619	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.47;DP=1094113;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=0.113;SOR=0.604	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15366	NC_020431.seq__15366	T	G	361788	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.01;DP=1093625;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.68;ReadPosRankSum=0.023;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15373	NC_020431.seq__15373	G	A	780829	.	AC=0;AF=0.021;AN=2;BaseQRankSum=-0.864;DP=1093497;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=32.56;ReadPosRankSum=0.401;SOR=0.802	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15497	NC_020431.seq__15497	A	C	1142810	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.46;DP=1089830;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.31;ReadPosRankSum=-0.558;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15559	NC_020431.seq__15559	T	G	79137	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.574;DP=1088078;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.24;ReadPosRankSum=-2.212;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15604	NC_020431.seq__15604	G	"C,T"	500912	.	"AC=0,0;AF=0.005236,0.002618;AN=2;BaseQRankSum=0.16;DP=1087929;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4,2;MLEAF=0.005236,0.002618;MQ=60;MQRankSum=0;QD=33;ReadPosRankSum=0.025;SOR=0.754"	GT:AD:DP:GQ:PL	"0/0:1522,0,0:1522:99:0,120,1800,120,1800,1800"
NC_020431.seq	15888	NC_020431.seq__15888	T	C	2578110	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.959;DP=1088770;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=34.68;ReadPosRankSum=0.457;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15936	NC_020431.seq__15936	A	G	336658	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.65;DP=1086107;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.19;ReadPosRankSum=1.02;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	15947	NC_020431.seq__15947	T	G	172410	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.54;DP=1086038;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.6;ReadPosRankSum=0.667;SOR=0.761	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	16115	NC_020431.seq__16115	G	A	503156	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.26;DP=1087823;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=59.99;MQRankSum=7.9;QD=26.38;ReadPosRankSum=0.593;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	16173	NC_020431.seq__16173	T	C	80448	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.033;DP=1087992;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.58;ReadPosRankSum=-0.557;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	16179	NC_020431.seq__16179	G	C	295985	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.916;DP=1088606;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.017;QD=27.33;ReadPosRankSum=2.42;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1522,0:1522:99:0,120,1800"
NC_020431.seq	16183	NC_020431.seq__16183	A	G	26748900	.	AC=2;AF=0.535;AN=2;BaseQRankSum=0.534;DP=1126891;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=408;MLEAF=0.535;MQ=59.82;MQRankSum=0;QD=30.77;ReadPosRankSum=0.247;SOR=0.698	GT:AD:DP:GQ:PL	"1/1:8,1747:1755:99:65925,4960,0"
NC_020431.seq	16191	NC_020431.seq__16191	A	G	710739	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.29;DP=1118613;ExcessHet=-0;FS=0;InbreedingCoeff=0.9998;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=37.16;ReadPosRankSum=0.432;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1724,0:1724:99:0,120,1800"
NC_020431.seq	16330	NC_020431.seq__16330	G	C	5049640	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.368;DP=1118536;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=26.39;ReadPosRankSum=0.433;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1724,0:1724:99:0,120,1800"
NC_020431.seq	16543	NC_020431.seq__16543	A	G	27396700	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.242;DP=1128137;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=31.57;ReadPosRankSum=0.152;SOR=0.66	GT:AD:DP:GQ:PL	"1/1:10,1774:1784:99:67453,5020,0"
NC_020431.seq	16573	NC_020431.seq__16573	A	C	364987	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.19;DP=1109401;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=0.194;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1729,0:1729:99:0,120,1800"
NC_020431.seq	16672	NC_020431.seq__16672	C	T	40745800	.	AC=2;AF=0.89;AN=2;BaseQRankSum=-0.311;DP=1160038;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=0.086;SOR=0.688	GT:AD:DP:GQ:PL	"1/1:0,1743:1743:99:65344,5233,0"
NC_020431.seq	16686	NC_020431.seq__16686	G	A	175255	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.049;DP=1111681;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.53;ReadPosRankSum=-0.718;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	16887	NC_020431.seq__16887	G	A	184863	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.49;DP=1111214;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.02;QD=33.74;ReadPosRankSum=0.877;SOR=0.916	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	16896	NC_020431.seq__16896	C	T	185883	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.35;DP=1111222;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.021;QD=26.69;ReadPosRankSum=0.866;SOR=0.873	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	16964	NC_020431.seq__16964	G	A	232391	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.3;DP=1111115;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.001;QD=28.43;ReadPosRankSum=-0.461;SOR=0.803	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	17044	NC_020431.seq__17044	A	C	111537	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.367;DP=1111048;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.78;ReadPosRankSum=0.495;SOR=0.409	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	17092	NC_020431.seq__17092	T	C	27233500	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.489;DP=1130473;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.23;ReadPosRankSum=-0.076;SOR=0.639	GT:AD:DP:GQ:PL	"1/1:15,1677:1692:99:63383,4536,0"
NC_020431.seq	17114	NC_020431.seq__17114	T	C	163580	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.37;DP=1129189;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.02;QD=24.95;ReadPosRankSum=-1.098;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1639,0:1639:99:0,120,1800"
NC_020431.seq	17134	NC_020431.seq__17134	A	G	221540	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.607;DP=1129150;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.1;ReadPosRankSum=0.511;SOR=0.464	GT:AD:DP:GQ:PL	"0/0:1639,0:1639:99:0,120,1800"
NC_020431.seq	17203	NC_020431.seq__17203	T	G	425179	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.407;DP=1129318;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.005;QD=27.85;ReadPosRankSum=0.615;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1639,0:1639:99:0,120,1800"
NC_020431.seq	17218	NC_020431.seq__17218	G	T	27052300	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.315;DP=1137713;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=32.63;ReadPosRankSum=0.068;SOR=0.675	GT:AD:DP:GQ:PL	"1/1:11,1604:1615:99:60423,4491,0"
NC_020431.seq	17239	NC_020431.seq__17239	T	A	1050250	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.36;DP=1132124;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=0.5;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:1619,0:1619:99:0,120,1800"
NC_020431.seq	17388	NC_020431.seq__17388	G	T	184498	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.48;DP=1132373;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.045;QD=25.69;ReadPosRankSum=-0.046;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:1619,0:1619:99:0,120,1800"
NC_020431.seq	17394	NC_020431.seq__17394	T	G	4646860	.	AC=0;AF=0.076;AN=2;BaseQRankSum=0.887;DP=1139030;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=58;MLEAF=0.076;MQ=60;MQRankSum=0;QD=27.94;ReadPosRankSum=0.885;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1619,0:1619:99:0,120,1800"
NC_020431.seq	17422	NC_020431.seq__17422	G	A	181814	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.435;DP=1138707;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.044;QD=30.39;ReadPosRankSum=-1.173;SOR=0.813	GT:AD:DP:GQ:PL	"0/0:1619,0:1619:99:0,120,1800"
NC_020431.seq	17452	NC_020431.seq__17452	A	C	29689700	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.937;DP=1178415;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=28.86;ReadPosRankSum=0.058;SOR=0.689	GT:AD:DP:GQ:PL	"1/1:8,1771:1779:99:77398,5072,0"
NC_020431.seq	17459	NC_020431.seq__17459	T	G	46466	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.088;DP=1169009;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.43;ReadPosRankSum=0.444;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1805,0:1805:99:0,120,1800"
NC_020431.seq	17474	NC_020431.seq__17474	T	G	6873770	.	AC=2;AF=0.123;AN=2;BaseQRankSum=0.47;DP=1167194;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=0.276;SOR=0.717	GT:AD:DP:GQ:PL	"1/1:47,1730:1777:99:63523,3480,0"
NC_020431.seq	17479	NC_020431.seq__17479	T	G	468856	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.224;DP=1164488;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=58.94;MQRankSum=0;QD=27.84;ReadPosRankSum=0.133;SOR=0.553	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17498	NC_020431.seq__17498	A	C	573464	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.649;DP=1163869;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=26.4;ReadPosRankSum=-0.16;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17503	NC_020431.seq__17503	G	A	131897	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.92;DP=1163752;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.56;ReadPosRankSum=0.102;SOR=0.753	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17512	NC_020431.seq__17512	T	G	131720	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.957;DP=1163757;ExcessHet=0;FS=2.107;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=37.92;ReadPosRankSum=-0.191;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17614	NC_020431.seq__17614	A	G	317362	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.79;DP=1164048;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.033;QD=32.64;ReadPosRankSum=1.18;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17636	NC_020431.seq__17636	G	A	267526	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.55;DP=1163167;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.188;QD=30.3;ReadPosRankSum=1.16;SOR=0.523	GT:AD:DP:GQ:PL	"0/0:1777,0:1777:99:0,120,1800"
NC_020431.seq	17651	NC_020431.seq__17651	G	A	28558100	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.51;DP=1164783;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.93;ReadPosRankSum=0.106;SOR=0.646	GT:AD:DP:GQ:PL	"1/1:9,1830:1839:99:68985,5151,0"
NC_020431.seq	17656	NC_020431.seq__17656	T	C	185491	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.56;DP=1126728;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.31;ReadPosRankSum=-0.146;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	17738	NC_020431.seq__17738	T	G	286320	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=0.841;DP=1125988;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=33.76;ReadPosRankSum=1.88;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	17759	NC_020431.seq__17759	A	C	10196800	.	AC=0;AF=0.191;AN=2;BaseQRankSum=0.663;DP=1125952;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=146;MLEAF=0.191;MQ=60;MQRankSum=0;QD=28.08;ReadPosRankSum=0.238;SOR=0.765	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18044	NC_020431.seq__18044	C	T	167650	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.313;DP=1112447;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.028;QD=30.74;ReadPosRankSum=0.221;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18061	NC_020431.seq__18061	C	T	595316	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.606;DP=1112303;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.22;ReadPosRankSum=0.003;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18090	NC_020431.seq__18090	G	A	238145	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.399;DP=1112077;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.083;QD=34.61;ReadPosRankSum=-0.76;SOR=0.81	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18105	NC_020431.seq__18105	T	G	3272390	.	AC=0;AF=0.088;AN=2;BaseQRankSum=1.66;DP=1111826;ExcessHet=-0;FS=0;InbreedingCoeff=0.9836;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=0.255;SOR=0.742	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18127	NC_020431.seq__18127	G	A	566646	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.663;DP=1108309;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.067;QD=31.58;ReadPosRankSum=-0.28;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18160	NC_020431.seq__18160	C	T	522203	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.332;DP=1108292;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.19;ReadPosRankSum=1;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	18208	NC_020431.seq__18208	G	T	24482300	.	AC=2;AF=0.513;AN=2;BaseQRankSum=0.467;DP=1112311;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=392;MLEAF=0.513;MQ=60;MQRankSum=0;QD=27.74;ReadPosRankSum=0.223;SOR=0.639	GT:AD:DP:GQ:PL	"1/1:13,1724:1737:99:63678,4705,0"
NC_020431.seq	18219	NC_020431.seq__18219	C	A	327978	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.872;DP=1076004;ExcessHet=0;FS=1.687;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.65;ReadPosRankSum=0.317;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18234	NC_020431.seq__18234	T	G	323492	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=5.13;DP=1076012;ExcessHet=0;FS=1.687;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.93;ReadPosRankSum=3.05;SOR=0.556	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18277	NC_020431.seq__18277	T	C	150555	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.858;DP=1075677;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.08;ReadPosRankSum=-1.146;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18310	NC_020431.seq__18310	G	"T,A"	1728700	.	"AC=0,0;AF=0.024,0.007853;AN=2;BaseQRankSum=1.26;DP=1074745;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=18,6;MLEAF=0.024,0.007853;MQ=60;MQRankSum=0;QD=29.02;ReadPosRankSum=-0.054;SOR=0.634"	GT:AD:DP:GQ:PL	"0/0:1623,0,0:1623:99:0,120,1800,120,1800,1800"
NC_020431.seq	18349	NC_020431.seq__18349	G	A	172570	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.06;DP=1073866;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=1.25;QD=31.75;ReadPosRankSum=0.299;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18360	NC_020431.seq__18360	C	T	272526	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.502;DP=1073816;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.87;ReadPosRankSum=0.927;SOR=0.32	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18478	NC_020431.seq__18478	A	G	869353	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.79;DP=1076108;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=26.64;ReadPosRankSum=0.635;SOR=0.733	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18524	NC_020431.seq__18524	C	T	1050630	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.125;DP=1077013;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=1.43;SOR=0.588	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18549	NC_020431.seq__18549	T	G	170821	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.786;DP=1077528;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.83;ReadPosRankSum=-0.015;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18576	NC_020431.seq__18576	C	T	928773	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.545;DP=1079865;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.46;ReadPosRankSum=-0.396;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18594	NC_020431.seq__18594	A	G	193329	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.083;DP=1080670;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.056;QD=28.52;ReadPosRankSum=2.04;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18653	NC_020431.seq__18653	A	C	976177	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.588;DP=1080572;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=25.27;ReadPosRankSum=-0.21;SOR=0.552	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18661	NC_020431.seq__18661	G	A	645641	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-1.237;DP=1081491;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=35.69;ReadPosRankSum=0.432;SOR=0.517	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18722	NC_020431.seq__18722	G	A	3353140	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.038;DP=1090560;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=31.8;ReadPosRankSum=-0.05;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18733	NC_020431.seq__18733	C	A	171163	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.521;DP=1088013;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.24;ReadPosRankSum=-0.593;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18779	NC_020431.seq__18779	T	G	2048230	.	AC=0;AF=0.034;AN=2;BaseQRankSum=1.95;DP=1092229;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=33.76;ReadPosRankSum=0.086;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18818	NC_020431.seq__18818	G	A	312464	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.418;DP=1091545;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.91;ReadPosRankSum=0.609;SOR=0.723	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	18937	NC_020431.seq__18937	A	C	2717390	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.416;DP=1099630;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=28.2;ReadPosRankSum=0.329;SOR=0.702	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	19083	NC_020431.seq__19083	G	T	38677500	.	AC=2;AF=0.83;AN=2;BaseQRankSum=0.519;DP=1170456;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=634;MLEAF=0.83;MQ=60;MQRankSum=0;QD=27.28;ReadPosRankSum=0.269;SOR=0.702	GT:AD:DP:GQ:PL	"1/1:5,1686:1691:99:64428,4873,0"
NC_020431.seq	19093	NC_020431.seq__19093	T	C	348426	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2;DP=1148974;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=24.86;ReadPosRankSum=0.161;SOR=0.266	GT:AD:DP:GQ:PL	"0/0:1666,0:1666:99:0,120,1800"
NC_020431.seq	19111	NC_020431.seq__19111	G	A	94699	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.176;DP=1149902;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.54;ReadPosRankSum=-0.417;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1666,0:1666:99:0,120,1800"
NC_020431.seq	19174	NC_020431.seq__19174	T	C	28131400	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.108;DP=1167525;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=32.37;ReadPosRankSum=0.154;SOR=0.657	GT:AD:DP:GQ:PL	"1/1:10,1670:1680:99:61999,4648,0"
NC_020431.seq	19190	NC_020431.seq__19190	G	A	427222	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.415;DP=1113580;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.004;QD=26.21;ReadPosRankSum=0.33;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19210	NC_020431.seq__19210	T	G	125573	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.975;DP=1112871;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.49;ReadPosRankSum=1.18;SOR=0.335	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19233	NC_020431.seq__19233	C	T	197527	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.103;DP=1112694;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.161;QD=33.74;ReadPosRankSum=1.38;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19271	NC_020431.seq__19271	A	C	82105	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.26;DP=1112563;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=0.243;SOR=0.633	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19281	NC_020431.seq__19281	G	C	1808430	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.21;DP=1113529;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=0.243;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19384	NC_020431.seq__19384	T	"G,C"	290776	.	"AC=0,0;AF=0.002618,0.002618;AN=2;BaseQRankSum=-0.843;DP=1109042;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=2,2;MLEAF=0.002618,0.002618;MQ=60;MQRankSum=0;QD=26.31;ReadPosRankSum=0.93;SOR=0.524"	GT:AD:DP:GQ:PL	"0/0:1598,0,0:1598:99:0,120,1800,120,1800,1800"
NC_020431.seq	19426	NC_020431.seq__19426	C	T	1646880	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.3;DP=1109043;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.81;ReadPosRankSum=0.343;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19438	NC_020431.seq__19438	T	C	1131350	.	AC=0;AF=0.021;AN=2;BaseQRankSum=-0.281;DP=1108039;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=31.3;ReadPosRankSum=0.625;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19489	NC_020431.seq__19489	C	T	4987500	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.095;DP=1110529;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=32.07;ReadPosRankSum=-0.306;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19637	NC_020431.seq__19637	A	C	200873	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.03;DP=1105463;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.051;QD=27.15;ReadPosRankSum=0.073;SOR=0.795	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19714	NC_020431.seq__19714	G	A	397141	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.81;DP=1106006;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.042;QD=33.92;ReadPosRankSum=0.164;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	19731	NC_020431.seq__19731	T	C	106559	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.2;DP=1105309;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.56;ReadPosRankSum=-0.538;SOR=0.666	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20113	NC_020431.seq__20113	A	C	299597	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.1;DP=1105544;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.57;ReadPosRankSum=-0.812;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20185	NC_020431.seq__20185	T	G	203890	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.67;DP=1105491;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.062;QD=31.61;ReadPosRankSum=0.79;SOR=0.629	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20434	NC_020431.seq__20434	G	A	2692710	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.585;DP=1110841;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=28.66;ReadPosRankSum=0.4;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20497	NC_020431.seq__20497	C	T	149120	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.734;DP=1105484;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.32;ReadPosRankSum=-0.064;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20565	NC_020431.seq__20565	C	T	187999	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-3.453;DP=1105714;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.06;QD=34.27;ReadPosRankSum=1.91;SOR=0.812	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20637	NC_020431.seq__20637	A	C	234004	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.57;DP=1105546;ExcessHet=0.0028;FS=2.094;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.056;QD=25.81;ReadPosRankSum=0.519;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20657	NC_020431.seq__20657	C	T	887169	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.07;DP=1107539;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.82;ReadPosRankSum=-0.31;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20671	NC_020431.seq__20671	T	C	2734700	.	AC=0;AF=0.045;AN=2;BaseQRankSum=0.456;DP=1109010;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=34;MLEAF=0.045;MQ=60;MQRankSum=0;QD=28.52;ReadPosRankSum=0.052;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20723	NC_020431.seq__20723	G	A	344770	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.229;DP=1105428;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.43;ReadPosRankSum=1.13;SOR=0.511	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20797	NC_020431.seq__20797	A	C	1681730	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.8;DP=1107275;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=32;ReadPosRankSum=-0.014;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20852	NC_020431.seq__20852	T	G	1771040	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.747;DP=1108816;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=27.64;ReadPosRankSum=0.021;SOR=0.5	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20919	NC_020431.seq__20919	T	C	404882	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.575;DP=1105880;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.78;ReadPosRankSum=1.04;SOR=0.558	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20930	NC_020431.seq__20930	A	C	325286	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.1;DP=1105894;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.09;QD=35.2;ReadPosRankSum=0.488;SOR=0.518	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	20969	NC_020431.seq__20969	G	T	8225070	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.469;DP=1114506;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=30.26;ReadPosRankSum=0.01;SOR=0.627	GT:AD:DP:GQ:PL	"1/1:26,1643:1669:99:61753,4070,0"
NC_020431.seq	21149	NC_020431.seq__21149	C	T	1035470	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.269;DP=1111437;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.64;ReadPosRankSum=0.227;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1619,0:1619:99:0,120,1800"
NC_020431.seq	21257	NC_020431.seq__21257	C	A	8418540	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.524;DP=1123367;ExcessHet=-0;FS=0;InbreedingCoeff=0.9994;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=34.25;ReadPosRankSum=0.141;SOR=0.706	GT:AD:DP:GQ:PL	"1/1:27,1618:1645:99:60632,3987,0"
NC_020431.seq	21290	NC_020431.seq__21290	G	A	297061	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.37;DP=1113522;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.06;QD=30.9;ReadPosRankSum=2.71;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1602,0:1602:99:0,120,1800"
NC_020431.seq	21425	NC_020431.seq__21425	T	C	301740	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.83;DP=1113859;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.75;ReadPosRankSum=0.351;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1602,0:1602:99:0,120,1800"
NC_020431.seq	21605	NC_020431.seq__21605	G	T	44731300	.	AC=2;AF=0.992;AN=2;BaseQRankSum=2.9;DP=1147736;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=758;MLEAF=0.992;MQ=60;MQRankSum=0;QD=35.59;ReadPosRankSum=0.721;SOR=0.28	GT:AD:DP:GQ:PL	"1/1:0,1591:1591:99:59670,4773,0"
NC_020431.seq	21610	NC_020431.seq__21610	A	T	144266	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.129;DP=1090848;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.01;ReadPosRankSum=-0.93;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1589,0:1589:99:0,120,1800"
NC_020431.seq	21686	NC_020431.seq__21686	C	T	2508760	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.433;DP=1091124;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=27.73;ReadPosRankSum=0.256;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1589,0:1589:99:0,120,1800"
NC_020431.seq	22013	NC_020431.seq__22013	C	T	495.1	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.024;DP=1090094;ExcessHet=3.0274;FS=0;InbreedingCoeff=-0.0035;MLEAC=1;MLEAF=0.001309;MQ=65.5;MQRankSum=0;QD=0.14;ReadPosRankSum=-2.207;SOR=0.894	GT:AD:DP:GQ:PL	"0/0:1589,0:1589:99:0,120,1800"
NC_020431.seq	22025	NC_020431.seq__22025	T	G	8121830	.	AC=2;AF=0.168;AN=2;BaseQRankSum=1.78;DP=1099505;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=0.031;SOR=0.652	GT:AD:DP:GQ:PL	"1/1:41,1676:1717:99:62083,3427,0"
NC_020431.seq	22031	NC_020431.seq__22031	G	C	28322400	.	AC=2;AF=0.548;AN=2;BaseQRankSum=0.745;DP=1122877;ExcessHet=-0;FS=0;InbreedingCoeff=0.9466;MLEAC=420;MLEAF=0.55;MQ=60;MQRankSum=0;QD=33.04;ReadPosRankSum=-0.047;SOR=0.733	GT:AD:DP:GQ:PL	"1/1:5,1731:1736:99:77290,5069,0"
NC_020431.seq	22051	NC_020431.seq__22051	G	A	162655	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.819;DP=1128467;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.764;QD=29.14;ReadPosRankSum=-0.144;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	22061	NC_020431.seq__22061	A	G	26054500	.	AC=2;AF=0.507;AN=2;BaseQRankSum=-0.094;DP=1128363;ExcessHet=0;FS=0;InbreedingCoeff=0.8923;MLEAC=387;MLEAF=0.507;MQ=60;MQRankSum=0;QD=30.57;ReadPosRankSum=-0.282;SOR=0.648	GT:AD:DP:GQ:PL	"1/1:11,1737:1748:99:64521,4799,0"
NC_020431.seq	22139	NC_020431.seq__22139	A	C	44865.8	.	AC=0;AF=0.033;AN=2;BaseQRankSum=-0.097;DP=1121064;ExcessHet=5.2218;FS=0;InbreedingCoeff=-0.0355;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=1.18;ReadPosRankSum=0.237;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22148	NC_020431.seq__22148	C	T	47527.8	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.156;DP=1121200;ExcessHet=5.376;FS=0;InbreedingCoeff=-0.036;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=1.32;ReadPosRankSum=0.108;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22157	NC_020431.seq__22157	A	G	44914.6	.	AC=0;AF=0.03;AN=2;BaseQRankSum=0.847;DP=1121700;ExcessHet=5.3697;FS=0;InbreedingCoeff=-0.0353;MLEAC=23;MLEAF=0.03;MQ=60;MQRankSum=0;QD=1.32;ReadPosRankSum=0.082;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22211	NC_020431.seq__22211	A	G	42125.1	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.188;DP=1120940;ExcessHet=5.061;FS=0;InbreedingCoeff=-0.0345;MLEAC=24;MLEAF=0.031;MQ=62;MQRankSum=0;QD=1.2;ReadPosRankSum=-0.169;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22225	NC_020431.seq__22225	T	G	40945.9	.	AC=0;AF=0.03;AN=2;BaseQRankSum=-0.571;DP=1120958;ExcessHet=4.9065;FS=0;InbreedingCoeff=-0.0331;MLEAC=23;MLEAF=0.03;MQ=60;MQRankSum=0;QD=1.24;ReadPosRankSum=0.168;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22267	NC_020431.seq__22267	C	T	1097900	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-1.478;DP=1121589;ExcessHet=0;FS=0;InbreedingCoeff=0.9937;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=-0.271;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22319	NC_020431.seq__22319	G	A	48734.4	.	AC=0;AF=0.033;AN=2;BaseQRankSum=0.043;DP=1123641;ExcessHet=5.2218;FS=0;InbreedingCoeff=-0.0359;MLEAC=25;MLEAF=0.033;MQ=60;MQRankSum=0;QD=1.09;ReadPosRankSum=-1.94;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1574,0:1574:99:0,120,1800"
NC_020431.seq	22321	NC_020431.seq__22321	C	A	29194300	.	AC=2;AF=0.618;AN=2;BaseQRankSum=1.86;DP=1150414;ExcessHet=-0;FS=0;InbreedingCoeff=0.8302;MLEAC=472;MLEAF=0.618;MQ=60;MQRankSum=0;QD=29.5;ReadPosRankSum=0.381;SOR=0.667	GT:AD:DP:GQ:PL	"1/1:5,1711:1716:99:62667,4962,0"
NC_020431.seq	22339	NC_020431.seq__22339	G	A	47902.1	.	AC=0;AF=0.031;AN=2;BaseQRankSum=-0.124;DP=1129609;ExcessHet=4.9116;FS=0;InbreedingCoeff=-0.0338;MLEAC=24;MLEAF=0.031;MQ=62.03;MQRankSum=0;QD=1.17;ReadPosRankSum=-1.576;SOR=0.709	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22418	NC_020431.seq__22418	A	C	60053	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.56;DP=1128703;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.15;ReadPosRankSum=-0.847;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22439	NC_020431.seq__22439	C	"*,T"	315975	.	"AC=0,0;AF=0.031,0.005236;AN=2;BaseQRankSum=0.804;DP=1132066;ExcessHet=0.2069;FS=0;InbreedingCoeff=0.1102;MLEAC=24,4;MLEAF=0.031,0.005236;MQ=26.02;MQRankSum=0.076;QD=6.28;ReadPosRankSum=-0.084;SOR=0.673"	GT:AD:DP:GQ:PL	"0/0:1677,0,0:1677:99:0,120,1800,120,1800,1800"
NC_020431.seq	22460	NC_020431.seq__22460	T	"G,A"	1051800	.	"AC=0,0;AF=0.024,0.002618;AN=2;BaseQRankSum=1.32;DP=1132273;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18,2;MLEAF=0.024,0.002618;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=0.358;SOR=0.665"	GT:AD:DP:GQ:PL	"0/0:1677,0,0:1677:99:0,120,1800,120,1800,1800"
NC_020431.seq	22463	NC_020431.seq__22463	G	A	42198	.	AC=0;AF=0.034;AN=2;BaseQRankSum=0.262;DP=1130019;ExcessHet=5.2277;FS=0;InbreedingCoeff=-0.0366;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=0.97;ReadPosRankSum=0.126;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22488	NC_020431.seq__22488	T	A	31978.5	.	AC=0;AF=0.033;AN=2;BaseQRankSum=-0.266;DP=1131001;ExcessHet=5.2218;FS=0;InbreedingCoeff=-0.0361;MLEAC=25;MLEAF=0.033;MQ=60.46;MQRankSum=0;QD=0.69;ReadPosRankSum=-1.925;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22507	NC_020431.seq__22507	G	A	23561.7	.	AC=0;AF=0.026;AN=2;BaseQRankSum=1.48;DP=1131476;ExcessHet=5.684;FS=0;InbreedingCoeff=-0.0347;MLEAC=20;MLEAF=0.026;MQ=62.03;MQRankSum=0;QD=0.62;ReadPosRankSum=-3.427;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22524	NC_020431.seq__22524	A	C	786339	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.99;DP=1131825;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=27.94;ReadPosRankSum=1.17;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22546	NC_020431.seq__22546	C	T	11471	.	AC=0;AF=0.012;AN=2;BaseQRankSum=1.72;DP=1126661;ExcessHet=3.6092;FS=0;InbreedingCoeff=-0.0157;MLEAC=8;MLEAF=0.01;MQ=59.93;MQRankSum=-11.11;QD=0.86;ReadPosRankSum=-4.395;SOR=0.727	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22560	NC_020431.seq__22560	A	C	884700	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.231;DP=1127364;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.02;ReadPosRankSum=-0.144;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22573	NC_020431.seq__22573	A	C	2053330	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.301;DP=1129357;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=25.75;ReadPosRankSum=0.594;SOR=0.79	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22585	NC_020431.seq__22585	G	T	4945.12	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=3.53;DP=1128153;ExcessHet=3.6867;FS=0;InbreedingCoeff=-0.0139;MLEAC=5;MLEAF=0.006545;MQ=59.92;MQRankSum=-11.51;QD=0.8;ReadPosRankSum=-2.215;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22592	NC_020431.seq__22592	A	C	3790.05	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=2.52;DP=1127660;ExcessHet=3.6029;FS=0;InbreedingCoeff=-0.0133;MLEAC=5;MLEAF=0.006545;MQ=59.92;MQRankSum=-12.09;QD=0.62;ReadPosRankSum=-1.825;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22607	NC_020431.seq__22607	G	A	888139	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.041;DP=1124848;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=32.31;ReadPosRankSum=0.867;SOR=0.561	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22736	NC_020431.seq__22736	T	C	287.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.86;DP=1124523;ExcessHet=3.0103;FS=1.024;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.19;ReadPosRankSum=0.858;SOR=0.792	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22744	NC_020431.seq__22744	T	G	727994	.	AC=0;AF=0.013;AN=2;BaseQRankSum=2.68;DP=1124571;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.43;ReadPosRankSum=0.299;SOR=0.624	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	22771	NC_020431.seq__22771	A	G	33949400	.	AC=2;AF=0.649;AN=2;BaseQRankSum=-0.251;DP=1151548;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=496;MLEAF=0.649;MQ=60;MQRankSum=0;QD=25.76;ReadPosRankSum=0.203;SOR=0.746	GT:AD:DP:GQ:PL	"1/1:3,1750:1755:99:66646,5154,0"
NC_020431.seq	22830	NC_020431.seq__22830	T	G	555002	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.151;DP=1109625;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.09;ReadPosRankSum=-0.211;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	22869	NC_020431.seq__22869	T	G	10034200	.	AC=0;AF=0.188;AN=2;BaseQRankSum=0.668;DP=1117433;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=144;MLEAF=0.188;MQ=60;MQRankSum=0;QD=33.1;ReadPosRankSum=0.371;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	22920	NC_020431.seq__22920	G	A	117804	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.834;DP=1096887;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.58;ReadPosRankSum=0.261;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	22960	NC_020431.seq__22960	G	A	118375	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.41;DP=1096857;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=6;QD=29.04;ReadPosRankSum=-0.133;SOR=0.508	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23194	NC_020431.seq__23194	T	G	620368	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.69;DP=1097682;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=-0.28;SOR=0.758	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23264	NC_020431.seq__23264	A	G	1727880	.	AC=0;AF=0.035;AN=2;BaseQRankSum=0.082;DP=1098606;ExcessHet=-0;FS=0;InbreedingCoeff=0.9616;MLEAC=27;MLEAF=0.035;MQ=60;MQRankSum=0;QD=29.98;ReadPosRankSum=2.12;SOR=0.537	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23312	NC_020431.seq__23312	A	G	2790.14	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.042;DP=1096553;ExcessHet=3.692;FS=0;InbreedingCoeff=-0.0164;MLEAC=8;MLEAF=0.01;MQ=71.28;MQRankSum=0;QD=0.36;ReadPosRankSum=0.236;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23353	NC_020431.seq__23353	C	T	222596	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.02;DP=1094376;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.084;QD=28.63;ReadPosRankSum=-1.601;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23435	NC_020431.seq__23435	C	T	143724	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.033;DP=1093642;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0.006;QD=32.59;ReadPosRankSum=-0.358;SOR=0.749	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23436	NC_020431.seq__23436	C	T	170966	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.926;DP=1093628;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=28.01;ReadPosRankSum=-0.109;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23497	NC_020431.seq__23497	G	T	3679.89	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.383;DP=1094929;ExcessHet=5.4628;FS=0;InbreedingCoeff=-0.0283;MLEAC=12;MLEAF=0.016;MQ=63.06;MQRankSum=0;QD=0.25;ReadPosRankSum=0.08;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23509	NC_020431.seq__23509	A	C	58252	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.84;DP=1095014;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.02;ReadPosRankSum=0.034;SOR=0.431	GT:AD:DP:GQ:PL	"0/0:1541,0:1541:99:0,120,1800"
NC_020431.seq	23518	NC_020431.seq__23518	A	G	26144200	.	AC=2;AF=0.573;AN=2;BaseQRankSum=-0.191;DP=1102815;ExcessHet=-0;FS=0;InbreedingCoeff=0.7667;MLEAC=456;MLEAF=0.597;MQ=60.05;MQRankSum=0;QD=31.97;ReadPosRankSum=-0.113;SOR=0.699	GT:AD:DP:GQ:PL	"1/1:2,1559:1561:99:59497,4604,0"
NC_020431.seq	23629	NC_020431.seq__23629	T	G	1332660	.	AC=0;AF=0.026;AN=2;BaseQRankSum=1.07;DP=1074486;ExcessHet=-0;FS=0;InbreedingCoeff=0.9749;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=25.69;ReadPosRankSum=0.028;SOR=0.842	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23663	NC_020431.seq__23663	T	G	136977	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.69;DP=1074180;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7993;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=1.03;SOR=0.783	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23799	NC_020431.seq__23799	T	C	986991	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.161;DP=1076139;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.31;ReadPosRankSum=-0.419;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23865	NC_020431.seq__23865	T	G	418549	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.79;DP=1075036;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.003;QD=29.97;ReadPosRankSum=0.683;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23891	NC_020431.seq__23891	G	A	574760	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-1.55;DP=1075923;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.73;ReadPosRankSum=1.11;SOR=0.564	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23902	NC_020431.seq__23902	A	C	1241680	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.539;DP=1077939;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=29.83;ReadPosRankSum=0.49;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23954	NC_020431.seq__23954	G	A	237675	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.398;DP=1076286;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.068;QD=30.16;ReadPosRankSum=0.609;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23980	NC_020431.seq__23980	A	C	199996	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.58;DP=1076207;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.059;QD=31.57;ReadPosRankSum=1.17;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	23989	NC_020431.seq__23989	T	C	4886.36	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=1.01;DP=1076454;ExcessHet=3.0675;FS=0.93;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=0.64;ReadPosRankSum=0.058;SOR=0.782	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24033	NC_020431.seq__24033	C	T	826414	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.671;DP=1076734;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.22;ReadPosRankSum=-0.098;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24090	NC_020431.seq__24090	T	G	305192	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.14;DP=1076849;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.21;ReadPosRankSum=0.925;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24193	NC_020431.seq__24193	G	A	271961	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.82;DP=1076698;ExcessHet=0.0171;FS=0;InbreedingCoeff=0.5695;MLEAC=3;MLEAF=0.003927;MQ=59.99;MQRankSum=7.24;QD=33.56;ReadPosRankSum=-0.13;SOR=0.729	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24335	NC_020431.seq__24335	C	T	45614	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.791;DP=1076731;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.33;ReadPosRankSum=0.005;SOR=0.261	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24388	NC_020431.seq__24388	C	T	159194	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.789;DP=1077103;ExcessHet=0.0028;FS=1.792;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.018;QD=33.6;ReadPosRankSum=-1.323;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	24406	NC_020431.seq__24406	T	C	28912400	.	AC=2;AF=0.579;AN=2;BaseQRankSum=-0.067;DP=1105229;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=442;MLEAF=0.579;MQ=60;MQRankSum=0;QD=33.88;ReadPosRankSum=0.684;SOR=0.717	GT:AD:DP:GQ:PL	"1/1:6,1635:1641:99:61330,4692,0"
NC_020431.seq	24408	NC_020431.seq__24408	G	A	187.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.95;DP=1062734;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.08;ReadPosRankSum=0.018;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24431	NC_020431.seq__24431	T	G	119167	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.102;DP=1063149;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.38;ReadPosRankSum=1.37;SOR=0.582	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24466	NC_020431.seq__24466	C	A	3891.17	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.079;DP=1062606;ExcessHet=3.0446;FS=0;InbreedingCoeff=-0.0053;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=0.67;ReadPosRankSum=-0.626;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24504	NC_020431.seq__24504	A	"C,*"	939223	.	"AC=0,0;AF=0.016,0.005236;AN=2;BaseQRankSum=1.61;DP=1064915;ExcessHet=0;FS=0;InbreedingCoeff=0.7446;MLEAC=12,4;MLEAF=0.016,0.005236;MQ=53.14;MQRankSum=0;QD=30.13;ReadPosRankSum=0.347;SOR=0.758"	GT:AD:DP:GQ:PL	"0/0:1517,0,0:1517:99:0,120,1800,120,1800,1800"
NC_020431.seq	24565	NC_020431.seq__24565	G	A	261507	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.27;DP=1061203;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.05;ReadPosRankSum=0.322;SOR=0.79	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24654	NC_020431.seq__24654	C	"G,A"	169111	.	"AC=0,0;AF=0.002618,0.001309;AN=2;BaseQRankSum=0.474;DP=1060022;ExcessHet=0.0086;FS=0;InbreedingCoeff=0.5986;MLEAC=2,1;MLEAF=0.002618,0.001309;MQ=60;MQRankSum=0;QD=27.28;ReadPosRankSum=1.64;SOR=0.654"	GT:AD:DP:GQ:PL	"0/0:1517,0,0:1517:99:0,120,1800,120,1800,1800"
NC_020431.seq	24785	NC_020431.seq__24785	T	G	353277	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.35;DP=1060583;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.31;ReadPosRankSum=1.04;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24804	NC_020431.seq__24804	G	C	101083	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.73;DP=1060182;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.15;ReadPosRankSum=-0.592;SOR=0.609	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24805	NC_020431.seq__24805	C	A	119796	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.5;DP=1060176;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.41;ReadPosRankSum=-0.12;SOR=0.296	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24822	NC_020431.seq__24822	G	T	454.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.59;DP=1059784;ExcessHet=3.0103;FS=1.03;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.3;ReadPosRankSum=-0.086;SOR=0.992	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24852	NC_020431.seq__24852	C	T	2529770	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.249;DP=1061109;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=32.66;ReadPosRankSum=-0.568;SOR=0.709	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24911	NC_020431.seq__24911	A	G	5556.36	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-0.652;DP=1056408;ExcessHet=3.0675;FS=0;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=0.73;ReadPosRankSum=1.06;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24924	NC_020431.seq__24924	T	C	155047	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.35;DP=1056758;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.31;ReadPosRankSum=-0.893;SOR=0.794	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24948	NC_020431.seq__24948	T	C	175433	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.3;DP=1056966;ExcessHet=0;FS=0;InbreedingCoeff=0.956;MLEAC=7;MLEAF=0.009162;MQ=60;MQRankSum=0;QD=29.81;ReadPosRankSum=1.1;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	24956	NC_020431.seq__24956	A	G	4920.36	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.336;DP=1056729;ExcessHet=3.0675;FS=0;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=0.65;ReadPosRankSum=-0.005;SOR=0.64	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25256	NC_020431.seq__25256	T	G	1747480	.	AC=0;AF=0.05;AN=2;BaseQRankSum=1.96;DP=1059014;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=38;MLEAF=0.05;MQ=60;MQRankSum=0;QD=26.08;ReadPosRankSum=0.45;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25295	NC_020431.seq__25295	G	A	233624	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.45;DP=1055649;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.053;QD=31.86;ReadPosRankSum=-0.078;SOR=0.543	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25299	NC_020431.seq__25299	C	T	334447	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.346;DP=1055997;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.03;ReadPosRankSum=0.346;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25349	NC_020431.seq__25349	T	A	266118	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.07;DP=1056465;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.008;QD=32.19;ReadPosRankSum=0.064;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25444	NC_020431.seq__25444	G	A	7003.35	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.579;DP=1056891;ExcessHet=3.0962;FS=2.025;InbreedingCoeff=-0.0079;MLEAC=6;MLEAF=0.007853;MQ=59.99;MQRankSum=0;QD=0.77;ReadPosRankSum=0.13;SOR=0.809	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25628	NC_020431.seq__25628	T	C	279372	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=0.275;DP=1056902;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=33.02;ReadPosRankSum=-0.1;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25648	NC_020431.seq__25648	A	C	348215	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.6;DP=1056929;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.55;ReadPosRankSum=0.725;SOR=0.51	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25684	NC_020431.seq__25684	A	G	5946.36	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-1.087;DP=1057375;ExcessHet=3.0675;FS=2.025;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=0.77;ReadPosRankSum=-0.13;SOR=0.875	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25766	NC_020431.seq__25766	T	G	306402	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.6;DP=1056495;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.03;ReadPosRankSum=1.06;SOR=0.588	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25819	NC_020431.seq__25819	A	G	107586	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.702;DP=1056383;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.38;ReadPosRankSum=0.047;SOR=0.406	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	25826	NC_020431.seq__25826	A	C	189.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.687;DP=1056346;ExcessHet=3.0103;FS=0.989;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.12;ReadPosRankSum=-0.147;SOR=0.948	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26038	NC_020431.seq__26038	A	G	170722	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.866;DP=1056480;ExcessHet=0.0028;FS=3.587;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.02;ReadPosRankSum=1.37;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26184	NC_020431.seq__26184	T	G	2105210	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.36;DP=1062352;ExcessHet=-0;FS=0;InbreedingCoeff=0.9997;MLEAC=28;MLEAF=0.037;MQ=59.99;MQRankSum=0;QD=25.26;ReadPosRankSum=0.245;SOR=0.729	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26253	NC_020431.seq__26253	C	A	412929	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.35;DP=1063087;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.37;ReadPosRankSum=-0.034;SOR=0.592	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26267	NC_020431.seq__26267	T	G	205386	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.09;DP=1063339;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.062;QD=24.32;ReadPosRankSum=-0.35;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26404	NC_020431.seq__26404	C	T	2150060	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.9;DP=1065182;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=0.926;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26514	NC_020431.seq__26514	G	T	213493	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.124;DP=1064548;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.06;QD=33.91;ReadPosRankSum=1.67;SOR=0.818	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26604	NC_020431.seq__26604	C	T	1178540	.	AC=0;AF=0.041;AN=2;BaseQRankSum=0.456;DP=1068487;ExcessHet=-0;FS=0;InbreedingCoeff=0.9664;MLEAC=31;MLEAF=0.041;MQ=60;MQRankSum=0;QD=31.09;ReadPosRankSum=-0.042;SOR=0.647	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26605	NC_020431.seq__26605	G	A	296256	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-1.115;DP=1067889;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.23;ReadPosRankSum=-0.027;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1517,0:1517:99:0,120,1800"
NC_020431.seq	26645	NC_020431.seq__26645	C	T	28156500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.502;DP=1163268;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.27;ReadPosRankSum=-0.056;SOR=0.712	GT:AD:DP:GQ:PL	"1/1:31,1789:1820:99:66279,4185,0"
NC_020431.seq	26702	NC_020431.seq__26702	A	C	291521	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.16;DP=1136994;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.69;ReadPosRankSum=0.636;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	26730	NC_020431.seq__26730	A	C	154808	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.843;DP=1137350;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.79;ReadPosRankSum=-0.117;SOR=0.773	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	26735	NC_020431.seq__26735	C	T	363464	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.17;DP=1137164;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.024;QD=29.52;ReadPosRankSum=0.728;SOR=0.573	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	26843	NC_020431.seq__26843	C	T	174180	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.475;DP=1137084;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.035;QD=33.69;ReadPosRankSum=-1.991;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	26942	NC_020431.seq__26942	A	C	28339900	.	AC=2;AF=0.537;AN=2;BaseQRankSum=1.1;DP=1158234;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=31.13;ReadPosRankSum=0.294;SOR=0.626	GT:AD:DP:GQ:PL	"1/1:20,1902:1922:99:71027,5040,0"
NC_020431.seq	27000	NC_020431.seq__27000	T	G	27285300	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.85;DP=1155439;ExcessHet=0;FS=3.054;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.99;ReadPosRankSum=0.294;SOR=0.611	GT:AD:DP:GQ:PL	"1/1:28,1911:1939:99:69580,4885,0"
NC_020431.seq	27005	NC_020431.seq__27005	C	A	177444	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.81;DP=1105592;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.046;QD=23.83;ReadPosRankSum=0.85;SOR=0.552	GT:AD:DP:GQ:PL	"0/0:1781,0:1781:99:0,120,1800"
NC_020431.seq	27028	NC_020431.seq__27028	A	C	186882	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=0.937;DP=1105428;ExcessHet=0.0085;FS=1.43;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=-0.094;QD=33.84;ReadPosRankSum=2.28;SOR=0.587	GT:AD:DP:GQ:PL	"0/0:1781,0:1781:99:0,120,1800"
NC_020431.seq	27045	NC_020431.seq__27045	T	A	200102	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.908;DP=1104524;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.038;QD=31.76;ReadPosRankSum=0.821;SOR=0.488	GT:AD:DP:GQ:PL	"0/0:1781,0:1781:99:0,120,1800"
NC_020431.seq	27047	NC_020431.seq__27047	T	G	199963	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.098;DP=1104535;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.05;ReadPosRankSum=0.675;SOR=0.452	GT:AD:DP:GQ:PL	"0/0:1781,0:1781:99:0,120,1800"
NC_020431.seq	27127	NC_020431.seq__27127	G	A	1643830	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.669;DP=1045400;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=27.09;ReadPosRankSum=1.26;SOR=0.564	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27186	NC_020431.seq__27186	A	C	1574070	.	AC=0;AF=0.039;AN=2;BaseQRankSum=-0.246;DP=1035611;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=27.6;ReadPosRankSum=0.1;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27189	NC_020431.seq__27189	A	C	960016	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.46;DP=1034885;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.86;ReadPosRankSum=-0.22;SOR=0.551	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27263	NC_020431.seq__27263	G	A	199154	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.393;DP=1033744;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.048;QD=34.94;ReadPosRankSum=-0.076;SOR=0.68	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27320	NC_020431.seq__27320	T	G	92727	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.638;DP=1033747;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=12.39;QD=27.24;ReadPosRankSum=-1.064;SOR=0.334	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27327	NC_020431.seq__27327	A	C	302688	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.71;DP=1034074;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=10.6;QD=26.64;ReadPosRankSum=0.206;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27335	NC_020431.seq__27335	C	G	175365	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.36;DP=1034415;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.66;ReadPosRankSum=-0.731;SOR=0.775	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27369	NC_020431.seq__27369	G	A	378625	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-1.315;DP=1035790;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=59.95;MQRankSum=18.35;QD=30.53;ReadPosRankSum=-0.496;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27371	NC_020431.seq__27371	T	G	186521	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.97;DP=1037460;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=6.64;QD=31.92;ReadPosRankSum=1.66;SOR=0.379	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27384	NC_020431.seq__27384	A	C	336560	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.22;DP=1037080;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.64;ReadPosRankSum=0.313;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27389	NC_020431.seq__27389	A	C	309520	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.334;DP=1037394;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.96;ReadPosRankSum=0.392;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27419	NC_020431.seq__27419	T	C	163558	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.491;DP=1037341;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.021;QD=22.17;ReadPosRankSum=0.232;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27424	NC_020431.seq__27424	G	A	306631	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.51;DP=1037188;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.8882;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.07;QD=33.23;ReadPosRankSum=1.69;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27461	NC_020431.seq__27461	A	G	299499	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.89;DP=1037399;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=6;QD=26.85;ReadPosRankSum=1.4;SOR=0.785	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27525	NC_020431.seq__27525	C	T	96808	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.19;DP=1037558;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.67;ReadPosRankSum=1.17;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1685,0:1685:99:0,117,1755"
NC_020431.seq	27643	NC_020431.seq__27643	G	T	157285	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.715;DP=1097495;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.016;QD=29.18;ReadPosRankSum=0.08;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27663	NC_020431.seq__27663	G	A	1093850	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.66;DP=1097308;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.92;ReadPosRankSum=0.67;SOR=0.727	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27665	NC_020431.seq__27665	G	A	321319	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.423;DP=1096345;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.69;ReadPosRankSum=0.77;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27687	NC_020431.seq__27687	C	T	163813	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.68;DP=1096387;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.12;ReadPosRankSum=0.981;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27729	NC_020431.seq__27729	T	A	283671	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.5;DP=1084077;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=57.07;MQRankSum=0.041;QD=29.16;ReadPosRankSum=0.74;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27736	NC_020431.seq__27736	T	G	160392	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.25;DP=1083184;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.13;ReadPosRankSum=1.9;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27784	NC_020431.seq__27784	T	G	48260	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.67;DP=1079078;ExcessHet=0.0028;FS=2.221;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.79;ReadPosRankSum=1.29;SOR=0.57	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27808	NC_020431.seq__27808	G	T	170691	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.361;DP=1078926;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.1;ReadPosRankSum=0.423;SOR=0.629	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27960	NC_020431.seq__27960	A	C	2569730	.	AC=0;AF=0.092;AN=2;BaseQRankSum=0.682;DP=1078381;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=70;MLEAF=0.092;MQ=60;MQRankSum=0;QD=27.78;ReadPosRankSum=0.029;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	27961	NC_020431.seq__27961	G	A	764770	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.94;DP=1067898;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.27;ReadPosRankSum=1.13;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	28031	NC_020431.seq__28031	G	A	160725	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.171;DP=1067693;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.82;ReadPosRankSum=-0.801;SOR=0.25	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	28098	NC_020431.seq__28098	G	C	947592	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.36;DP=1068165;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=24.67;ReadPosRankSum=-0.099;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1533,0:1533:99:0,120,1800"
NC_020431.seq	28194	NC_020431.seq__28194	A	C	26902000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.883;DP=1077534;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=27.37;ReadPosRankSum=0.559;SOR=0.692	GT:AD:DP:GQ:PL	"1/1:8,1670:1678:99:62543,4690,0"
NC_020431.seq	28219	NC_020431.seq__28219	G	A	30611800	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.273;DP=1080336;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=27.53;ReadPosRankSum=0.225;SOR=0.591	GT:AD:DP:GQ:PL	"1/1:7,1711:1718:99:74507,4955,0"
NC_020431.seq	28237	NC_020431.seq__28237	C	A	1198850	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.517;DP=1079410;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=26.08;ReadPosRankSum=-0.348;SOR=0.758	GT:AD:DP:GQ:PL	"0/0:1721,0:1721:99:0,120,1800"
NC_020431.seq	28328	NC_020431.seq__28328	T	G	170668	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.011;DP=1079725;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.031;QD=31.84;ReadPosRankSum=-0.671;SOR=0.625	GT:AD:DP:GQ:PL	"0/0:1721,0:1721:99:0,120,1800"
NC_020431.seq	28388	NC_020431.seq__28388	A	C	1145350	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.341;DP=1080636;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.15;ReadPosRankSum=0.136;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1721,0:1721:99:0,120,1800"
NC_020431.seq	28408	NC_020431.seq__28408	T	C	28141000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.406;DP=1104705;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.45;ReadPosRankSum=-0.097;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:10,1786:1796:99:67328,5021,0"
NC_020431.seq	28433	NC_020431.seq__28433	A	C	206075	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.65;DP=1096258;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.061;QD=25.43;ReadPosRankSum=-0.412;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1758,0:1758:99:0,120,1800"
NC_020431.seq	28481	NC_020431.seq__28481	G	A	27237500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.155;DP=1089741;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.02;ReadPosRankSum=0.069;SOR=0.714	GT:AD:DP:GQ:PL	"1/1:6,1706:1712:99:63805,4907,0"
NC_020431.seq	28548	NC_020431.seq__28548	C	A	26832600	.	AC=2;AF=0.537;AN=2;BaseQRankSum=1.78;DP=1096488;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26.97;ReadPosRankSum=0.19;SOR=0.513	GT:AD:DP:GQ:PL	"1/1:8,1688:1696:99:62666,4746,0"
NC_020431.seq	28630	NC_020431.seq__28630	T	G	336752	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.96;DP=1008502;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=0.934;SOR=0.757	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28641	NC_020431.seq__28641	T	G	947006	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.26;DP=1007587;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.23;ReadPosRankSum=0.481;SOR=0.572	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28642	NC_020431.seq__28642	A	C	1158100	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.83;DP=1004233;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=0.105;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28651	NC_020431.seq__28651	G	A	2637780	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.251;DP=999926;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=31.54;ReadPosRankSum=-0.143;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28691	NC_020431.seq__28691	A	C	882440	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.09;DP=991442;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=9.38;QD=32.2;ReadPosRankSum=0.607;SOR=0.583	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28748	NC_020431.seq__28748	G	T	3481770	.	AC=0;AF=0.079;AN=2;BaseQRankSum=0.926;DP=986277;ExcessHet=-0;FS=0;InbreedingCoeff=0.9552;MLEAC=60;MLEAF=0.079;MQ=60;MQRankSum=0;QD=26.26;ReadPosRankSum=1.56;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28749	NC_020431.seq__28749	A	T	3684260	.	AC=0;AF=0.079;AN=2;BaseQRankSum=0.708;DP=985788;ExcessHet=-0;FS=0;InbreedingCoeff=0.9552;MLEAC=60;MLEAF=0.079;MQ=60;MQRankSum=0;QD=26.92;ReadPosRankSum=1.67;SOR=0.625	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28750	NC_020431.seq__28750	A	C	3591060	.	AC=0;AF=0.079;AN=2;BaseQRankSum=1.24;DP=985731;ExcessHet=-0;FS=0;InbreedingCoeff=0.9552;MLEAC=60;MLEAF=0.079;MQ=60;MQRankSum=0;QD=25.6;ReadPosRankSum=1.49;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28753	NC_020431.seq__28753	A	T	542960	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.838;DP=975784;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.066;QD=29.45;ReadPosRankSum=-1.296;SOR=0.557	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28780	NC_020431.seq__28780	G	A	1042820	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.666;DP=973663;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=0.636;SOR=0.859	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28880	NC_020431.seq__28880	G	A	1827650	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.242;DP=969646;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.89;ReadPosRankSum=0.131;SOR=0.735	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28888	NC_020431.seq__28888	G	A	102256	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.186;DP=966493;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.05;ReadPosRankSum=0.98;SOR=0.57	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28895	NC_020431.seq__28895	A	C	237447	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.85;DP=966410;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=36.46;ReadPosRankSum=-0.132;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28916	NC_020431.seq__28916	A	G	969978	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-2.168;DP=965631;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.6;ReadPosRankSum=1.14;SOR=0.616	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28961	NC_020431.seq__28961	G	T	11231400	.	AC=0;AF=0.245;AN=2;BaseQRankSum=0.863;DP=964303;ExcessHet=-0;FS=0;InbreedingCoeff=0.9929;MLEAC=187;MLEAF=0.245;MQ=59.99;MQRankSum=0;QD=31.55;ReadPosRankSum=0.363;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28962	NC_020431.seq__28962	A	C	10799100	.	AC=0;AF=0.253;AN=2;BaseQRankSum=1.41;DP=964187;ExcessHet=-0;FS=0;InbreedingCoeff=0.9931;MLEAC=193;MLEAF=0.253;MQ=59.99;MQRankSum=0;QD=35.85;ReadPosRankSum=0.708;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	28993	NC_020431.seq__28993	T	A	115	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.96;DP=963292;ExcessHet=3.016;FS=1.108;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=59.71;MQRankSum=-10.45;QD=0.08;ReadPosRankSum=-0.471;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29005	NC_020431.seq__29005	C	A	182.99	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.998;DP=963305;ExcessHet=3.016;FS=1.126;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=59.81;MQRankSum=-11.03;QD=0.13;ReadPosRankSum=0.179;SOR=0.565	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29006	NC_020431.seq__29006	T	G	1308320	.	AC=0;AF=0.034;AN=2;BaseQRankSum=1.12;DP=964346;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=0.445;SOR=0.522	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29038	NC_020431.seq__29038	A	G	5810.67	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.71;DP=965498;ExcessHet=3.268;FS=0;InbreedingCoeff=-0.0119;MLEAC=8;MLEAF=0.01;MQ=59.91;MQRankSum=-10.83;QD=0.67;ReadPosRankSum=1.45;SOR=0.809	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29044	NC_020431.seq__29044	G	A	5849.87	.	AC=0;AF=0.012;AN=2;BaseQRankSum=2.27;DP=966032;ExcessHet=3.3256;FS=1.019;InbreedingCoeff=-0.0132;MLEAC=8;MLEAF=0.01;MQ=59.92;MQRankSum=-10.12;QD=0.59;ReadPosRankSum=2.07;SOR=0.849	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29046	NC_020431.seq__29046	C	T	7525.67	.	AC=0;AF=0.017;AN=2;BaseQRankSum=2.41;DP=966076;ExcessHet=3.4611;FS=2.359;InbreedingCoeff=-0.0172;MLEAC=12;MLEAF=0.016;MQ=59.93;MQRankSum=-10.14;QD=0.49;ReadPosRankSum=2;SOR=1.034	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29058	NC_020431.seq__29058	T	G	9941.05	.	AC=0;AF=0.014;AN=2;BaseQRankSum=2.8;DP=966503;ExcessHet=3.3902;FS=1.028;InbreedingCoeff=-0.0153;MLEAC=11;MLEAF=0.014;MQ=63.65;MQRankSum=-7.822;QD=0.71;ReadPosRankSum=0.71;SOR=1.035	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29060	NC_020431.seq__29060	C	T	9587.91	.	AC=0;AF=0.014;AN=2;BaseQRankSum=2.11;DP=966262;ExcessHet=3.3273;FS=2.195;InbreedingCoeff=-0.0146;MLEAC=11;MLEAF=0.014;MQ=62.54;MQRankSum=-7.702;QD=0.68;ReadPosRankSum=0.756;SOR=1.069	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29073	NC_020431.seq__29073	T	G	954.92	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.49;DP=965774;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=59.98;MQRankSum=-8.574;QD=0.39;ReadPosRankSum=-0.633;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29097	NC_020431.seq__29097	T	G	398557	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.947;DP=965828;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.83;ReadPosRankSum=0.371;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29305	NC_020431.seq__29305	G	A	1360720	.	AC=0;AF=0.026;AN=2;BaseQRankSum=1.51;DP=975177;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=31.31;ReadPosRankSum=0.138;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29308	NC_020431.seq__29308	T	G	517906	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.926;DP=976278;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.51;ReadPosRankSum=0.454;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29320	NC_020431.seq__29320	G	A	413942	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.59;DP=976156;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.1;ReadPosRankSum=0.608;SOR=0.512	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29353	NC_020431.seq__29353	T	C	72270	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.795;DP=976516;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.97;ReadPosRankSum=-0.976;SOR=0.453	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29449	NC_020431.seq__29449	A	C	425710	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.988;DP=976554;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.004;QD=31.61;ReadPosRankSum=-0.049;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29456	NC_020431.seq__29456	T	G	166717	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.136;DP=977792;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.4;ReadPosRankSum=-0.099;SOR=0.758	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29472	NC_020431.seq__29472	T	G	1379130	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.729;DP=980427;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.42;ReadPosRankSum=-0.632;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1489,0:1489:99:0,120,1800"
NC_020431.seq	29483	NC_020431.seq__29483	G	T	7478610	.	AC=2;AF=0.147;AN=2;BaseQRankSum=0.503;DP=1012010;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=112;MLEAF=0.147;MQ=60;MQRankSum=0;QD=26.29;ReadPosRankSum=0.185;SOR=0.742	GT:AD:DP:GQ:PL	"1/1:35,1709:1744:99:62212,3841,0"
NC_020431.seq	29490	NC_020431.seq__29490	A	C	170828	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.694;DP=1011387;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.037;QD=34.12;ReadPosRankSum=-1.278;SOR=0.834	GT:AD:DP:GQ:PL	"0/0:1720,0:1720:99:0,120,1800"
NC_020431.seq	29491	NC_020431.seq__29491	T	C	219699	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.37;DP=1011253;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.086;QD=33.98;ReadPosRankSum=-0.119;SOR=0.55	GT:AD:DP:GQ:PL	"0/0:1720,0:1720:99:0,120,1800"
NC_020431.seq	29572	NC_020431.seq__29572	T	C	26235700	.	AC=2;AF=0.531;AN=2;BaseQRankSum=-0.091;DP=1080948;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=0.001;SOR=0.681	GT:AD:DP:GQ:PL	"1/1:9,1693:1702:99:63332,4769,0"
NC_020431.seq	29600	NC_020431.seq__29600	G	A	1085320	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.124;DP=1064690;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.09;ReadPosRankSum=0.026;SOR=0.742	GT:AD:DP:GQ:PL	"0/0:1706,0:1706:99:0,120,1800"
NC_020431.seq	29673	NC_020431.seq__29673	G	A	167944	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.352;DP=1065086;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-1.049;QD=27.61;ReadPosRankSum=0.551;SOR=0.538	GT:AD:DP:GQ:PL	"0/0:1565,0:1565:99:0,120,1800"
NC_020431.seq	29676	NC_020431.seq__29676	A	G	302320	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.02;DP=1064766;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.08;ReadPosRankSum=0.507;SOR=0.399	GT:AD:DP:GQ:PL	"0/0:1565,0:1565:99:0,120,1800"
NC_020431.seq	29686	NC_020431.seq__29686	T	G	1628870	.	AC=0;AF=0.037;AN=2;BaseQRankSum=2.17;DP=1065235;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.86;ReadPosRankSum=-0.275;SOR=0.545	GT:AD:DP:GQ:PL	"0/0:1565,0:1565:99:0,120,1800"
NC_020431.seq	29737	NC_020431.seq__29737	T	G	3331690	.	AC=0;AF=0.088;AN=2;BaseQRankSum=1.15;DP=1065751;ExcessHet=-0;FS=0;InbreedingCoeff=0.9836;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=29.6;ReadPosRankSum=-0.076;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1565,0:1565:99:0,120,1800"
NC_020431.seq	29849	NC_020431.seq__29849	A	C	842196	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.61;DP=1059711;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=0.03;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1565,0:1565:99:0,120,1800"
NC_020431.seq	29855	NC_020431.seq__29855	G	T	25494600	.	AC=2;AF=0.531;AN=2;BaseQRankSum=0.509;DP=1056799;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=28.83;ReadPosRankSum=0;SOR=0.642	GT:AD:DP:GQ:PL	"1/1:11,1555:1566:99:58972,4291,0"
NC_020431.seq	29887	NC_020431.seq__29887	T	G	4815500	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.987;DP=1034946;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=32.62;ReadPosRankSum=0.194;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	29906	NC_020431.seq__29906	T	G	665165	.	AC=0;AF=0.013;AN=2;BaseQRankSum=2.28;DP=1032095;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=26.26;ReadPosRankSum=0.05;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30065	NC_020431.seq__30065	C	T	268477	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.46;DP=1029930;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.75;ReadPosRankSum=-0.362;SOR=0.724	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30207	NC_020431.seq__30207	A	C	9570880	.	AC=0;AF=0.194;AN=2;BaseQRankSum=1.01;DP=1041932;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=148;MLEAF=0.194;MQ=60;MQRankSum=0;QD=31.82;ReadPosRankSum=0.229;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30245	NC_020431.seq__30245	C	T	3279120	.	AC=0;AF=0.089;AN=2;BaseQRankSum=-0.403;DP=1049210;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=28.27;ReadPosRankSum=-0.138;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30259	NC_020431.seq__30259	T	G	527096	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.252;DP=1049654;ExcessHet=0;FS=2.133;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.81;ReadPosRankSum=0.537;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30278	NC_020431.seq__30278	G	T	939760	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.684;DP=1051913;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=0.703;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1492,0:1492:99:0,120,1800"
NC_020431.seq	30338	NC_020431.seq__30338	G	T	27695000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=1.54;DP=1107132;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=0.101;SOR=0.554	GT:AD:DP:GQ:PL	"1/1:20,1729:1749:99:64315,4500,0"
NC_020431.seq	30371	NC_020431.seq__30371	T	A	354087	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.47;DP=1023090;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.086;QD=28.47;ReadPosRankSum=1.73;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30421	NC_020431.seq__30421	T	C	300214	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.33;DP=1022620;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.41;ReadPosRankSum=0.02;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30436	NC_020431.seq__30436	T	G	180422	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.629;DP=1022183;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.049;QD=30.4;ReadPosRankSum=0.083;SOR=0.52	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30563	NC_020431.seq__30563	T	G	44748	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.449;DP=1021907;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=9.58;QD=30.33;ReadPosRankSum=0.487;SOR=0.227	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30574	NC_020431.seq__30574	C	G	5022510	.	AC=0;AF=0.186;AN=2;BaseQRankSum=0.036;DP=1038132;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=32.7;ReadPosRankSum=0.062;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30590	NC_020431.seq__30590	A	G	162114	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.01;DP=1030308;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.011;QD=30.5;ReadPosRankSum=0.805;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30618	NC_020431.seq__30618	A	C	521825	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.96;DP=1029273;ExcessHet=0;FS=3.144;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=30.14;ReadPosRankSum=-0.526;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30694	NC_020431.seq__30694	A	C	236074	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.94;DP=1026267;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.03;ReadPosRankSum=0.445;SOR=0.74	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30790	NC_020431.seq__30790	A	T	199292	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.42;DP=1026687;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=32.41;ReadPosRankSum=-0.274;SOR=0.499	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30810	NC_020431.seq__30810	G	A	300278	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.14;DP=1027019;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.9;ReadPosRankSum=1.87;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30835	NC_020431.seq__30835	A	G	3548610	.	AC=0;AF=0.094;AN=2;BaseQRankSum=0.262;DP=1033836;ExcessHet=-0;FS=0;InbreedingCoeff=0.9995;MLEAC=72;MLEAF=0.094;MQ=60;MQRankSum=0;QD=33.23;ReadPosRankSum=-0.067;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30852	NC_020431.seq__30852	C	T	1196010	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.03;DP=1035085;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=36.91;ReadPosRankSum=-0.517;SOR=0.575	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30893	NC_020431.seq__30893	A	C	656511	.	AC=0;AF=0.021;AN=2;BaseQRankSum=2.89;DP=1036178;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=32.92;ReadPosRankSum=0.972;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30914	NC_020431.seq__30914	T	G	178760	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.52;DP=1036131;ExcessHet=0.0028;FS=1.618;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.37;ReadPosRankSum=0.031;SOR=0.524	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30938	NC_020431.seq__30938	A	C	216268	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.71;DP=1036480;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.093;QD=36.09;ReadPosRankSum=1.09;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	30982	NC_020431.seq__30982	C	A	177503	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.89;DP=1037526;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.22;ReadPosRankSum=-0.52;SOR=0.5	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31077	NC_020431.seq__31077	A	C	144204	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.203;DP=1037969;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.2;ReadPosRankSum=0.552;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31120	NC_020431.seq__31120	A	C	1228180	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.304;DP=1043351;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0.108;QD=26.72;ReadPosRankSum=0.856;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31125	NC_020431.seq__31125	G	T	180520	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.08;DP=1042775;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.041;QD=33.7;ReadPosRankSum=0.864;SOR=0.734	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31152	NC_020431.seq__31152	C	T	150098	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.331;DP=1043087;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=16.14;QD=32.78;ReadPosRankSum=0.09;SOR=0.602	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31162	NC_020431.seq__31162	T	G	209714	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.2;DP=1043045;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=7.48;QD=30.64;ReadPosRankSum=0.863;SOR=0.55	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31179	NC_020431.seq__31179	A	C	215294	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.585;DP=1044179;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.005;QD=35.32;ReadPosRankSum=-0.169;SOR=0.772	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31209	NC_020431.seq__31209	T	G	214235	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.173;DP=1044866;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.06;QD=33.1;ReadPosRankSum=-1.752;SOR=0.804	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31228	NC_020431.seq__31228	A	C	175302	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.245;DP=1044666;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.47;ReadPosRankSum=1.36;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31233	NC_020431.seq__31233	A	C	369321	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.32;DP=1046388;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.02;QD=34.22;ReadPosRankSum=0.283;SOR=0.581	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31236	NC_020431.seq__31236	C	T	110913	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.89;DP=1046245;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.32;ReadPosRankSum=1.42;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31267	NC_020431.seq__31267	G	A	109003	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.928;DP=1046227;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.68;ReadPosRankSum=0.736;SOR=0.8	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31332	NC_020431.seq__31332	A	G	202107	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.26;DP=1046354;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.035;QD=32.13;ReadPosRankSum=-0.39;SOR=0.549	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31337	NC_020431.seq__31337	A	C	200472	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.35;DP=1046383;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.65;ReadPosRankSum=-0.445;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31392	NC_020431.seq__31392	C	T	1033850	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.009;DP=1051133;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=-0.956;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31468	NC_020431.seq__31468	T	G	775229	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.11;DP=1054764;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.99;ReadPosRankSum=1.62;SOR=0.587	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31484	NC_020431.seq__31484	C	G	49803	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.12;DP=1052366;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.04;ReadPosRankSum=1.92;SOR=0.166	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31489	NC_020431.seq__31489	A	C	240782	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.26;DP=1053751;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=0.927;SOR=0.702	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31605	NC_020431.seq__31605	G	A	115453	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.212;DP=1052456;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.55;ReadPosRankSum=-0.541;SOR=0.505	GT:AD:DP:GQ:PL	"0/0:1446,0:1446:99:0,120,1800"
NC_020431.seq	31678	NC_020431.seq__31678	T	G	28612200	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.354;DP=1156166;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=28.88;ReadPosRankSum=-0.468;SOR=0.731	GT:AD:DP:GQ:PL	"1/1:27,1928:1955:99:70807,4812,0"
NC_020431.seq	31682	NC_020431.seq__31682	T	C	316137	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.73;DP=1127747;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=27.51;ReadPosRankSum=0.105;SOR=0.348	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31685	NC_020431.seq__31685	A	C	319594	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.08;DP=1127635;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=0.347;SOR=0.343	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31687	NC_020431.seq__31687	A	C	304295	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.21;DP=1127638;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.17;ReadPosRankSum=0.202;SOR=0.36	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31696	NC_020431.seq__31696	T	G	124739	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.641;DP=1127688;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.01;ReadPosRankSum=1.14;SOR=0.139	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31712	NC_020431.seq__31712	A	G	779673	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.75;DP=1127316;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=34.57;ReadPosRankSum=1.46;SOR=0.59	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31714	NC_020431.seq__31714	T	G	894373	.	AC=0;AF=0.013;AN=2;BaseQRankSum=2.64;DP=1127239;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=32.83;ReadPosRankSum=1.31;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31733	NC_020431.seq__31733	A	C	3611510	.	AC=0;AF=0.09;AN=2;BaseQRankSum=0.521;DP=1125945;ExcessHet=-0;FS=0;InbreedingCoeff=0.984;MLEAC=69;MLEAF=0.09;MQ=60;MQRankSum=0;QD=27.63;ReadPosRankSum=0.554;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31768	NC_020431.seq__31768	T	G	1707140	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.819;DP=1131419;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.92;ReadPosRankSum=-0.08;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31784	NC_020431.seq__31784	A	T	997040	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.299;DP=1124986;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=1.51;SOR=0.813	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31785	NC_020431.seq__31785	G	A	1046060	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.495;DP=1125139;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=23.71;ReadPosRankSum=1.71;SOR=0.858	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31786	NC_020431.seq__31786	A	T	1047060	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.33;DP=1124930;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=-0.063;QD=28.46;ReadPosRankSum=1.08;SOR=0.849	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31794	NC_020431.seq__31794	A	C	1699200	.	AC=0;AF=0.03;AN=2;BaseQRankSum=1.48;DP=1135115;ExcessHet=-0;FS=0;InbreedingCoeff=0.9552;MLEAC=23;MLEAF=0.03;MQ=60;MQRankSum=0;QD=30.39;ReadPosRankSum=0.234;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31810	NC_020431.seq__31810	G	A	89609	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.61;DP=1129830;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.46;ReadPosRankSum=0.281;SOR=0.454	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:99:0,120,1800"
NC_020431.seq	31836	NC_020431.seq__31836	G	T	27227000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.88;DP=1145207;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=33.51;ReadPosRankSum=-0.064;SOR=0.423	GT:AD:DP:GQ:PL	"1/1:17,1802:1819:99:63845,4770,0"
NC_020431.seq	31854	NC_020431.seq__31854	A	G	905000	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.92;DP=1145912;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.86;ReadPosRankSum=-0.248;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1814,0:1814:99:0,120,1800"
NC_020431.seq	31857	NC_020431.seq__31857	G	A	31691200	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.085;DP=1142237;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.45;ReadPosRankSum=0.042;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:14,1822:1836:99:79883,5061,0"
NC_020431.seq	31915	NC_020431.seq__31915	C	T	1119470	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.866;DP=1063867;ExcessHet=0;FS=0;InbreedingCoeff=0.9989;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.81;ReadPosRankSum=-0.093;SOR=0.609	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	31952	NC_020431.seq__31952	A	G	202780	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.8;DP=1060484;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.29;ReadPosRankSum=1.69;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	31958	NC_020431.seq__31958	A	C	194592	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.84;DP=1059855;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.049;QD=30.17;ReadPosRankSum=-0.093;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	31963	NC_020431.seq__31963	C	T	63038	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.694;DP=1059434;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.95;ReadPosRankSum=1.09;SOR=0.587	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	31969	NC_020431.seq__31969	A	C	241085	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.26;DP=1059690;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-3.895;QD=31.26;ReadPosRankSum=1.41;SOR=0.903	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	31979	NC_020431.seq__31979	T	C	121975	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.36;DP=1059320;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.92;ReadPosRankSum=0.137;SOR=0.451	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	32053	NC_020431.seq__32053	A	C	126815	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.17;DP=1058888;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.59;ReadPosRankSum=1.04;SOR=0.441	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	32393	NC_020431.seq__32393	T	G	283394	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.71;DP=1058581;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.02;ReadPosRankSum=-0.06;SOR=0.442	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	32741	NC_020431.seq__32741	A	G	157712	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.38;DP=1058845;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.016;QD=34.43;ReadPosRankSum=3.41;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	32986	NC_020431.seq__32986	C	T	428467	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.662;DP=1061268;ExcessHet=0;FS=0;InbreedingCoeff=0.5942;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=33.4;ReadPosRankSum=-0.195;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	32987	NC_020431.seq__32987	C	T	40580.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.924;DP=1059585;ExcessHet=3.0103;FS=1.913;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=30.67;ReadPosRankSum=1.64;SOR=0.534	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	33157	NC_020431.seq__33157	A	C	2114.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.637;DP=1059797;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=2.2;ReadPosRankSum=0.812;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1494,0:1494:99:0,120,1800"
NC_020431.seq	33276	NC_020431.seq__33276	A	C	163028	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.609;DP=1062928;ExcessHet=0.0028;FS=1.413;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.84;ReadPosRankSum=1.16;SOR=0.405	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	33312	NC_020431.seq__33312	A	C	1146110	.	AC=0;AF=0.018;AN=2;BaseQRankSum=3.41;DP=1065203;ExcessHet=0;FS=2.523;InbreedingCoeff=0.7089;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=34.41;ReadPosRankSum=-0.045;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	33354	NC_020431.seq__33354	G	C	2677.14	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=-0.302;DP=1063353;ExcessHet=3.3207;FS=1.006;InbreedingCoeff=-0.0096;MLEAC=3;MLEAF=0.003927;MQ=68.07;MQRankSum=0;QD=0.35;ReadPosRankSum=-1.212;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	33358	NC_020431.seq__33358	G	A	166284	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.39;DP=1062972;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9968;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.17;QD=32.1;ReadPosRankSum=0.225;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	33420	NC_020431.seq__33420	A	C	21062.8	.	AC=1;AF=0.013;AN=2;BaseQRankSum=-0.337;DP=1064349;ExcessHet=3.9831;FS=0;InbreedingCoeff=-0.0193;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=0.88;ReadPosRankSum=-0.511;SOR=0.604	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1661,148:1809:99:0|1:33420_A_C:1160,0,72875"
NC_020431.seq	33425	NC_020431.seq__33425	T	G	21018.7	.	AC=1;AF=0.014;AN=2;BaseQRankSum=-0.491;DP=1063353;ExcessHet=3.788;FS=0;InbreedingCoeff=-0.0187;MLEAC=11;MLEAF=0.014;MQ=60;MQRankSum=0;QD=0.8;ReadPosRankSum=-0.084;SOR=0.597	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1654,148:1802:99:0|1:33420_A_C:1144,0,73132"
NC_020431.seq	33531	NC_020431.seq__33531	A	C	1011490	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.32;DP=1063891;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.71;ReadPosRankSum=-0.514;SOR=0.65	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33733	NC_020431.seq__33733	C	A	1757.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.738;DP=1063243;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.76;ReadPosRankSum=-0.543;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33734	NC_020431.seq__33734	C	A	1757.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.05;DP=1063246;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.76;ReadPosRankSum=-0.429;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33780	NC_020431.seq__33780	A	G	119331	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.819;DP=1063743;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.94;ReadPosRankSum=-0.761;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33828	NC_020431.seq__33828	A	G	2227550	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.18;DP=1068199;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=0.238;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33888	NC_020431.seq__33888	C	T	627032	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.246;DP=1064703;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=27.16;ReadPosRankSum=0.667;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1780,0:1780:99:0,120,1800"
NC_020431.seq	33907	NC_020431.seq__33907	A	C	1861120	.	AC=1;AF=0.022;AN=2;BaseQRankSum=8;DP=1070575;ExcessHet=0;FS=0;InbreedingCoeff=0.699;MLEAC=17;MLEAF=0.022;MQ=60;MQRankSum=0;QD=33.73;ReadPosRankSum=0.237;SOR=0.685	GT:AD:DP:GQ:PL	"0/1:183,1721:1904:99:58765,0,1039"
NC_020431.seq	34143	NC_020431.seq__34143	T	C	100.84	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.03;DP=1066375;ExcessHet=3.0273;FS=3.999;InbreedingCoeff=-0.0027;MLEAC=1;MLEAF=0.001309;MQ=59.77;MQRankSum=-14.49;QD=0.12;ReadPosRankSum=2.28;SOR=1.107	GT:AD:DP:GQ:PL	"0/0:1710,0:1710:99:0,120,1800"
NC_020431.seq	34146	NC_020431.seq__34146	A	G	85.84	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.38;DP=1066381;ExcessHet=3.016;FS=5.689;InbreedingCoeff=-0.002;MLEAC=1;MLEAF=0.001309;MQ=59.77;MQRankSum=-13.91;QD=0.1;ReadPosRankSum=2.36;SOR=1.279	GT:AD:DP:GQ:PL	"0/0:1710,0:1710:99:0,120,1800"
NC_020431.seq	34152	NC_020431.seq__34152	G	"T,C"	29050400	.	"AC=2,0;AF=0.581,0.001309;AN=2;BaseQRankSum=0.732;DP=1104227;ExcessHet=0;FS=0;InbreedingCoeff=0.9686;MLEAC=451,1;MLEAF=0.59,0.001309;MQ=60.02;MQRankSum=-0.126;QD=29.09;ReadPosRankSum=0.185;SOR=0.656"	GT:AD:DP:GQ:PL	"1/1:3,1656,0:1659:99:62641,4858,0,62650,4975,62767"
NC_020431.seq	34545	NC_020431.seq__34545	T	G	271988	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.55;DP=1053879;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.003;QD=29.97;ReadPosRankSum=1.9;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1673,0:1673:99:0,120,1800"
NC_020431.seq	34648	NC_020431.seq__34648	T	G	52525	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.324;DP=1053573;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.77;ReadPosRankSum=0.006;SOR=0.867	GT:AD:DP:GQ:PL	"0/0:1673,0:1673:99:0,120,1800"
NC_020431.seq	34672	NC_020431.seq__34672	T	G	147949	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.39;DP=1053574;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.65;ReadPosRankSum=-0.349;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1673,0:1673:99:0,120,1800"
NC_020431.seq	34722	NC_020431.seq__34722	T	G	328130	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.376;DP=1055695;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=27.12;ReadPosRankSum=0.273;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1673,0:1673:99:0,120,1800"
NC_020431.seq	34775	NC_020431.seq__34775	T	G	1931020	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.97;DP=1057198;ExcessHet=-0;FS=2.232;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=30.07;ReadPosRankSum=0.929;SOR=0.841	GT:AD:DP:GQ:PL	"0/0:1673,0:1673:99:0,120,1800"
NC_020431.seq	34790	NC_020431.seq__34790	T	C	40377200	.	AC=2;AF=0.89;AN=2;BaseQRankSum=-0.454;DP=1127487;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=27.87;ReadPosRankSum=0.097;SOR=0.663	GT:AD:DP:GQ:PL	"1/1:0,1730:1732:99:64363,5189,0"
NC_020431.seq	34797	NC_020431.seq__34797	A	G	764691	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.566;DP=1045939;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.15;ReadPosRankSum=0.052;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	34806	NC_020431.seq__34806	A	C	162220	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.902;DP=1040682;ExcessHet=0.0028;FS=1.772;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.024;QD=32.36;ReadPosRankSum=0.013;SOR=0.82	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	34810	NC_020431.seq__34810	T	G	579298	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.488;DP=1040298;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.004;QD=31.2;ReadPosRankSum=1.89;SOR=0.796	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	34811	NC_020431.seq__34811	G	T	109785	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.42;DP=1038119;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=8.25;QD=33.27;ReadPosRankSum=1.42;SOR=0.551	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	34896	NC_020431.seq__34896	G	A	5521.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.42;DP=1038013;ExcessHet=3.0103;FS=0.893;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.25;ReadPosRankSum=-1.355;SOR=0.845	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35165	NC_020431.seq__35165	T	G	298891	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.76;DP=1034068;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.6;ReadPosRankSum=1.64;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35261	NC_020431.seq__35261	C	T	1040610	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.972;DP=1034486;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.15;ReadPosRankSum=-0.661;SOR=0.723	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35306	NC_020431.seq__35306	C	T	288939	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.042;DP=1033167;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.13;ReadPosRankSum=0.335;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35338	NC_020431.seq__35338	G	A	349236	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.12;DP=1032582;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=2.12;SOR=0.74	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35430	NC_020431.seq__35430	T	C	190243	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.88;DP=1032082;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.049;QD=32.15;ReadPosRankSum=-0.62;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	35489	NC_020431.seq__35489	A	C	25352500	.	AC=2;AF=0.531;AN=2;BaseQRankSum=1.63;DP=1059366;ExcessHet=0;FS=2.121;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=26.25;ReadPosRankSum=7.9;SOR=0.546	GT:AD:DP:GQ:PL	"1/1:4,1790:1794:99:67462,5232,0"
NC_020431.seq	35495	NC_020431.seq__35495	T	G	154888	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.18;DP=996925;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.009;QD=28.52;ReadPosRankSum=10.24;SOR=0.555	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35506	NC_020431.seq__35506	G	A	410535	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=3.55;DP=996706;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=35.65;ReadPosRankSum=13.39;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35522	NC_020431.seq__35522	T	A	534682	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-1.025;DP=994999;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=33;ReadPosRankSum=0.274;SOR=0.758	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35533	NC_020431.seq__35533	C	T	226487	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.002;DP=993666;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.127;QD=23.8;ReadPosRankSum=0.346;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35706	NC_020431.seq__35706	G	A	182167	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.714;DP=992557;ExcessHet=0.0028;FS=1.696;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.42;ReadPosRankSum=-1.15;SOR=0.63	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35707	NC_020431.seq__35707	A	T	182254	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.31;DP=992561;ExcessHet=0.0028;FS=1.706;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.95;ReadPosRankSum=-0.973;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35764	NC_020431.seq__35764	C	T	149327	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.558;DP=992278;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.77;ReadPosRankSum=0.507;SOR=0.739	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35793	NC_020431.seq__35793	T	"*,G"	8751390	.	"AC=0,0;AF=0.258,0.01;AN=2;BaseQRankSum=3.23;DP=988904;ExcessHet=0;FS=0;InbreedingCoeff=0.9666;MLEAC=197,8;MLEAF=0.258,0.01;MQ=14.65;MQRankSum=0;QD=33.9;ReadPosRankSum=0.859;SOR=0.67"	GT:AD:DP:GQ:PL	"0/0:1579,0,0:1579:99:0,120,1800,120,1800,1800"
NC_020431.seq	35794	NC_020431.seq__35794	C	A	1686330	.	AC=0;AF=0.06;AN=2;BaseQRankSum=0.381;DP=975536;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=34;MLEAF=0.06;MQ=22.79;MQRankSum=0;QD=30.07;ReadPosRankSum=-0.187;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35800	NC_020431.seq__35800	T	G	257484	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.91;DP=976714;ExcessHet=0.0584;FS=0;InbreedingCoeff=0.3083;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.69;ReadPosRankSum=1.81;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	35804	NC_020431.seq__35804	G	A	22939700	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.426;DP=993527;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=-0.068;SOR=0.698	GT:AD:DP:GQ:PL	"1/1:6,1619:1625:99:61437,4685,0"
NC_020431.seq	35809	NC_020431.seq__35809	T	A	294575	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.702;DP=956332;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.81;ReadPosRankSum=0.928;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	35862	NC_020431.seq__35862	C	T	209061	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.858;DP=955463;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.82;QD=27.66;ReadPosRankSum=2.76;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	35872	NC_020431.seq__35872	T	C	150088	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.367;DP=956047;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.76;ReadPosRankSum=0.517;SOR=0.3	GT:AD:DP:GQ:PL	"0/0:1577,0:1577:99:0,120,1800"
NC_020431.seq	35897	NC_020431.seq__35897	A	"C,*"	203215	.	"AC=0,0;AF=0.013,0.018;AN=2;BaseQRankSum=0.8;DP=956497;ExcessHet=0;FS=0;InbreedingCoeff=0.7177;MLEAC=9,13;MLEAF=0.013,0.018;MQ=8.2;MQRankSum=0;QD=25.9;ReadPosRankSum=0.905;SOR=0.786"	GT:AD:DP:GQ:PL	"0/0:1609,0,0:1609:99:0,120,1800,120,1800,1800"
NC_020431.seq	35904	NC_020431.seq__35904	G	"A,*"	162001	.	"AC=0,0;AF=0.005249,0.002625;AN=2;BaseQRankSum=5.61;DP=957378;ExcessHet=0;FS=2.003;InbreedingCoeff=0.8917;MLEAC=4,2;MLEAF=0.005249,0.002625;MQ=48.48;MQRankSum=0;QD=31.13;ReadPosRankSum=4.77;SOR=0.366"	GT:AD:DP:GQ:PL	"0/0:1609,0,0:1609:99:0,120,1800,120,1800,1800"
NC_020431.seq	35907	NC_020431.seq__35907	T	"C,*"	644149	.	"AC=0,0;AF=0.018,0.002618;AN=2;BaseQRankSum=0.229;DP=952532;ExcessHet=0;FS=0;InbreedingCoeff=0.884;MLEAC=14,2;MLEAF=0.018,0.002618;MQ=57.2;MQRankSum=0;QD=28.37;ReadPosRankSum=0.139;SOR=0.898"	GT:AD:DP:GQ:PL	"0/0:1609,0,0:1609:99:0,120,1800,120,1800,1800"
NC_020431.seq	35909	NC_020431.seq__35909	C	"T,*"	1007690	.	"AC=0,0;AF=0.021,0.002618;AN=2;BaseQRankSum=-0.518;DP=953334;ExcessHet=0;FS=0;InbreedingCoeff=0.9246;MLEAC=16,2;MLEAF=0.021,0.002618;MQ=58.23;MQRankSum=0;QD=33.47;ReadPosRankSum=0.504;SOR=0.419"	GT:AD:DP:GQ:PL	"0/0:1609,0,0:1609:99:0,120,1800,120,1800,1800"
NC_020431.seq	35933	NC_020431.seq__35933	C	"T,*"	187944	.	"AC=0,0;AF=0.002618,0.002618;AN=2;BaseQRankSum=-0.176;DP=958145;ExcessHet=0;FS=0;InbreedingCoeff=0.9408;MLEAC=2,2;MLEAF=0.002618,0.002618;MQ=50.95;MQRankSum=-0.137;QD=30.21;ReadPosRankSum=-0.177;SOR=0.476"	GT:AD:DP:GQ:PL	"0/0:1609,0,0:1609:99:0,120,1800,120,1800,1800"
NC_020431.seq	35948	NC_020431.seq__35948	A	"*,T"	3936340	.	"AC=0,0;AF=0.406,0.084;AN=0;BaseQRankSum=-2.294;DP=940706;ExcessHet=-0;FS=0;InbreedingCoeff=0.7233;MLEAC=125,22;MLEAF=0.437,0.077;MQ=12.76;MQRankSum=0;QD=26.62;ReadPosRankSum=0.758;SOR=0.731"	GT:AD:DP:PL	"./.:1681,0,0:1681:0,0,0,0,0,0"
NC_020431.seq	35949	NC_020431.seq__35949	A	"*,T"	3457020	.	"AC=0,0;AF=0.06,0.091;AN=2;BaseQRankSum=-0.826;DP=916134;ExcessHet=-0;FS=0;InbreedingCoeff=0.965;MLEAC=46,67;MLEAF=0.06,0.088;MQ=47.75;MQRankSum=0;QD=28.72;ReadPosRankSum=-2.895;SOR=0.719"	GT:AD:DP:GQ:PL	"0/0:1585,0,0:1585:99:0,120,1800,120,1800,1800"
NC_020431.seq	35953	NC_020431.seq__35953	A	T	49984.4	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.14;DP=927283;ExcessHet=0.0085;FS=3.426;InbreedingCoeff=0.7992;MLEAC=2;MLEAF=0.002618;MQ=47.99;MQRankSum=0;QD=32.63;ReadPosRankSum=-3.259;SOR=0.205	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36152	NC_020431.seq__36152	G	C	291309	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.559;DP=914500;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.28;ReadPosRankSum=0.883;SOR=0.708	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36155	NC_020431.seq__36155	C	A	1960730	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.899;DP=926193;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=-0.044;SOR=0.862	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36163	NC_020431.seq__36163	A	C	93422.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.29;DP=927840;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=36.4;ReadPosRankSum=1.4;SOR=0.825	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36165	NC_020431.seq__36165	A	C	585399	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.885;DP=930227;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.016;QD=29.63;ReadPosRankSum=0.05;SOR=0.841	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36193	NC_020431.seq__36193	C	T	1657780	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.013;DP=944008;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=0.427;SOR=0.83	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36268	NC_020431.seq__36268	A	G	9830300	.	AC=0;AF=0.188;AN=2;BaseQRankSum=0.418;DP=1006734;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=144;MLEAF=0.188;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=0.146;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1585,0:1585:99:0,120,1800"
NC_020431.seq	36283	NC_020431.seq__36283	C	T	31606600	.	AC=2;AF=0.579;AN=2;BaseQRankSum=0.086;DP=1110031;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=442;MLEAF=0.579;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=0.114;SOR=0.598	GT:AD:DP:GQ:PL	"1/1:7,1745:1752:99:66216,5007,0"
NC_020431.seq	36305	NC_020431.seq__36305	A	C	178307	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.645;DP=1092043;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=-0.508;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1746,0:1746:99:0,120,1800"
NC_020431.seq	36354	NC_020431.seq__36354	C	T	352653	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.59;DP=1091529;ExcessHet=0;FS=1.8;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.111;QD=36.84;ReadPosRankSum=0.131;SOR=0.799	GT:AD:DP:GQ:PL	"0/0:1746,0:1746:99:0,120,1800"
NC_020431.seq	36433	NC_020431.seq__36433	A	T	27229300	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.327;DP=1096904;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.65;ReadPosRankSum=-0.007;SOR=0.693	GT:AD:DP:GQ:PL	"1/1:6,1837:1843:99:69602,5286,0"
NC_020431.seq	36906	NC_020431.seq__36906	A	G	28481700	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.284;DP=1132611;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=32.47;ReadPosRankSum=-0.033;SOR=0.702	GT:AD:DP:GQ:PL	"1/1:8,1928:1936:99:72581,5480,0"
NC_020431.seq	37140	NC_020431.seq__37140	T	C	1214870	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.403;DP=1059353;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=35.67;ReadPosRankSum=0.227;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	37191	NC_020431.seq__37191	T	G	225178	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.33;DP=1055269;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.012;QD=31.7;ReadPosRankSum=0.995;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	37419	NC_020431.seq__37419	C	T	297168	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.185;DP=1054971;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=29.77;ReadPosRankSum=-0.588;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	37809	NC_020431.seq__37809	A	G	166140	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.317;DP=1054673;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.63;ReadPosRankSum=1.83;SOR=0.382	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	37893	NC_020431.seq__37893	T	G	218682	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.829;DP=1054990;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.081;QD=31.87;ReadPosRankSum=5.4;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	37967	NC_020431.seq__37967	G	T	157370	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.224;DP=1054701;ExcessHet=0.0028;FS=2.63;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.015;QD=34.29;ReadPosRankSum=-2.531;SOR=0.435	GT:AD:DP:GQ:PL	"0/0:1719,0:1719:99:0,120,1800"
NC_020431.seq	38097	NC_020431.seq__38097	C	T	130719	.	AC=1;AF=0.124;AN=2;BaseQRankSum=-0.759;DP=1092826;ExcessHet=39.9309;FS=0;InbreedingCoeff=-0.1527;MLEAC=95;MLEAF=0.124;MQ=60.97;MQRankSum=0;QD=0.81;ReadPosRankSum=0.005;SOR=0.799	GT:AD:DP:GQ:PL	"0/1:1682,161:1843:99:419,0,58637"
NC_020431.seq	38142	NC_020431.seq__38142	T	C	289443	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.303;DP=1086313;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=8.7;QD=26.47;ReadPosRankSum=1.67;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1810,0:1810:99:0,120,1800"
NC_020431.seq	38154	NC_020431.seq__38154	C	"T,*"	138638	.	"AC=1,0;AF=0.118,0.007853;AN=2;BaseQRankSum=-1.674;DP=1087890;ExcessHet=34.2417;FS=0;InbreedingCoeff=-0.1392;MLEAC=91,6;MLEAF=0.119,0.007853;MQ=59.09;MQRankSum=0;QD=0.84;ReadPosRankSum=0.06;SOR=0.675"	GT:AD:DP:GQ:PL	"0/1:1652,167,0:1819:99:776,0,58123,5741,58623,64363"
NC_020431.seq	38229	NC_020431.seq__38229	T	G	46132.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.65;DP=1072915;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.43;ReadPosRankSum=4.02;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1718,0:1718:99:0,120,1800"
NC_020431.seq	38291	NC_020431.seq__38291	G	A	229270	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.563;DP=1073157;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.032;QD=31.36;ReadPosRankSum=-0.192;SOR=0.499	GT:AD:DP:GQ:PL	"0/0:1718,0:1718:99:0,120,1800"
NC_020431.seq	38349	NC_020431.seq__38349	C	A	118312	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.838;DP=1072919;ExcessHet=0.0028;FS=1.129;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.48;ReadPosRankSum=1.51;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1718,0:1718:99:0,120,1800"
NC_020431.seq	38357	NC_020431.seq__38357	C	T	70818.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.721;DP=1072636;ExcessHet=3.0103;FS=1.843;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=33.44;ReadPosRankSum=-0.419;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:1718,0:1718:99:0,120,1800"
NC_020431.seq	38403	NC_020431.seq__38403	G	A	104585	.	AC=1;AF=0.12;AN=2;BaseQRankSum=0.07;DP=1071505;ExcessHet=32.3822;FS=0.994;InbreedingCoeff=-0.1411;MLEAC=92;MLEAF=0.12;MQ=60;MQRankSum=0;QD=0.7;ReadPosRankSum=0.622;SOR=0.879	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1573,134:1707:99:0|1:38403_G_A:969,0,72998"
NC_020431.seq	38424	NC_020431.seq__38424	A	G	76399.4	.	AC=1;AF=0.103;AN=2;BaseQRankSum=0.386;DP=1070936;ExcessHet=25.9908;FS=1.01;InbreedingCoeff=-0.121;MLEAC=79;MLEAF=0.103;MQ=62.43;MQRankSum=0;QD=0.58;ReadPosRankSum=0.216;SOR=0.686	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1591,140:1731:99:0|1:38403_G_A:912,0,73815"
NC_020431.seq	38998	NC_020431.seq__38998	A	G	26431800	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.012;DP=1071358;ExcessHet=-0;FS=0;InbreedingCoeff=0.9997;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=27.32;ReadPosRankSum=0.024;SOR=0.686	GT:AD:DP:GQ:PL	"1/1:17,1607:1624:99:59883,4209,0"
NC_020431.seq	39292	NC_020431.seq__39292	C	A	25326500	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.767;DP=1033797;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=34.39;ReadPosRankSum=-0.071;SOR=0.723	GT:AD:DP:GQ:PL	"1/1:14,1524:1538:99:58087,4077,0"
NC_020431.seq	39367	NC_020431.seq__39367	C	T	181386	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.75;DP=1026058;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.69;ReadPosRankSum=-0.898;SOR=0.491	GT:AD:DP:GQ:PL	"0/0:1505,0:1505:99:0,120,1800"
NC_020431.seq	39544	NC_020431.seq__39544	A	G	331866	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.75;DP=1026238;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.145;QD=33.89;ReadPosRankSum=-1.464;SOR=0.718	GT:AD:DP:GQ:PL	"0/0:1505,0:1505:99:0,120,1800"
NC_020431.seq	39874	NC_020431.seq__39874	G	T	28249200	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.21;DP=1114790;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=38.06;ReadPosRankSum=0.167;SOR=0.788	GT:AD:DP:GQ:PL	"1/1:8,1614:1622:99:60641,4539,0"
NC_020431.seq	40041	NC_020431.seq__40041	A	C	2198130	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.82;DP=1031534;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=29.81;ReadPosRankSum=0.688;SOR=0.618	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40068	NC_020431.seq__40068	G	A	183716	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.898;DP=1029751;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=24.53;ReadPosRankSum=-0.035;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40081	NC_020431.seq__40081	T	G	183603	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.122;DP=1028870;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.09;ReadPosRankSum=-1.046;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40138	NC_020431.seq__40138	C	T	415338	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.69;DP=1028311;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=29.51;QD=30.98;ReadPosRankSum=2.4;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40192	NC_020431.seq__40192	A	G	861112	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.485;DP=1027170;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=26.79;ReadPosRankSum=0.943;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40201	NC_020431.seq__40201	C	T	2086170	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.149;DP=1025559;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=33.35;ReadPosRankSum=-0.478;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40220	NC_020431.seq__40220	A	G	367156	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.508;DP=1020789;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.082;QD=29.81;ReadPosRankSum=0.741;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40360	NC_020431.seq__40360	G	A	115379	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.737;DP=1018816;ExcessHet=0;FS=2.068;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.05;ReadPosRankSum=0.604;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40392	NC_020431.seq__40392	T	C	402871	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.522;DP=1018524;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.7;ReadPosRankSum=1.25;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40456	NC_020431.seq__40456	C	T	268809	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.74;DP=1018113;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.04;QD=29.24;ReadPosRankSum=2.43;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40542	NC_020431.seq__40542	T	C	23.81	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.916;DP=1018219;ExcessHet=3.0103;FS=6.107;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.32;ReadPosRankSum=-2.257;SOR=2.613	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40609	NC_020431.seq__40609	G	A	255506	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.5;DP=1018627;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.63;ReadPosRankSum=-1.428;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40651	NC_020431.seq__40651	T	G	376892	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.01;DP=1018485;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.36;ReadPosRankSum=0.133;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40660	NC_020431.seq__40660	A	C	296540	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.89;DP=1018299;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.05;ReadPosRankSum=1.47;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40804	NC_020431.seq__40804	G	A	193395	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.215;DP=1018158;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.45;ReadPosRankSum=0.715;SOR=0.519	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	40872	NC_020431.seq__40872	G	A	17566.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.732;DP=1018043;ExcessHet=3.0103;FS=0.559;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.557;SOR=0.756	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41019	NC_020431.seq__41019	G	C	314.33	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.79;DP=1018518;ExcessHet=3.1291;FS=3.709;InbreedingCoeff=-0.0059;MLEAC=2;MLEAF=0.002618;MQ=59.91;MQRankSum=-6.307;QD=0.25;ReadPosRankSum=1.61;SOR=1.031	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41173	NC_020431.seq__41173	G	A	46138	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.871;DP=1017891;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.19;ReadPosRankSum=-0.411;SOR=0.514	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41267	NC_020431.seq__41267	T	C	980430	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.8;DP=1019849;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.1;ReadPosRankSum=-0.382;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41304	NC_020431.seq__41304	C	T	870605	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.59;DP=1020234;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=32.2;ReadPosRankSum=0.125;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41356	NC_020431.seq__41356	G	C	294840	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.13;DP=1020412;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.016;QD=29.01;ReadPosRankSum=1.38;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41498	NC_020431.seq__41498	T	G	398129	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.3;DP=1014018;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.43;ReadPosRankSum=2.34;SOR=0.796	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	41539	NC_020431.seq__41539	A	C	1196730	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.43;DP=992605;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.05;ReadPosRankSum=0.228;SOR=0.628	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,114,1710"
NC_020431.seq	41544	NC_020431.seq__41544	T	G	157339	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.26;DP=990820;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.019;QD=31.49;ReadPosRankSum=1.22;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,114,1710"
NC_020431.seq	41566	NC_020431.seq__41566	T	G	345112	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.931;DP=990288;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.29;ReadPosRankSum=-1.409;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,114,1710"
NC_020431.seq	41594	NC_020431.seq__41594	T	G	359625	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.835;DP=991049;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=4.78;QD=30.33;ReadPosRankSum=-0.189;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,114,1710"
NC_020431.seq	41672	NC_020431.seq__41672	T	G	166291	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.37;DP=968877;ExcessHet=0;FS=1.65;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.39;ReadPosRankSum=0.098;SOR=0.351	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	41703	NC_020431.seq__41703	G	A	79862	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.94;DP=969012;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.43;ReadPosRankSum=0.851;SOR=0.517	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	41746	NC_020431.seq__41746	G	A	300978	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.421;DP=970064;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=20.12;QD=33.25;ReadPosRankSum=-0.073;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	41770	NC_020431.seq__41770	C	A	30130100	.	AC=2;AF=0.618;AN=2;BaseQRankSum=1.12;DP=1071191;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=472;MLEAF=0.618;MQ=60;MQRankSum=0;QD=29.15;ReadPosRankSum=0.154;SOR=0.673	GT:AD:DP:GQ:PL	"1/1:7,1887:1894:99:69814,5459,0"
NC_020431.seq	41787	NC_020431.seq__41787	T	G	299216	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=6.08;DP=1039588;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.841;QD=32.05;ReadPosRankSum=1.86;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41792	NC_020431.seq__41792	T	G	261238	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.52;DP=1039080;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.09;ReadPosRankSum=1.46;SOR=0.82	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41826	NC_020431.seq__41826	A	C	1306610	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.04;DP=1040282;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=26.61;ReadPosRankSum=0.459;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41828	NC_020431.seq__41828	A	C	212893	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.94;DP=1034522;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.08;ReadPosRankSum=-0.126;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41845	NC_020431.seq__41845	A	T	97111.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.11;DP=1031120;ExcessHet=0;FS=2.065;InbreedingCoeff=0.9998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=1.46;SOR=0.316	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41848	NC_020431.seq__41848	G	A	215231	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.373;DP=1031049;ExcessHet=0.0283;FS=2.183;InbreedingCoeff=0.5695;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.078;QD=30.84;ReadPosRankSum=0.994;SOR=0.577	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	41852	NC_020431.seq__41852	C	"*,T"	337604	.	"AC=0,0;AF=0.005236,0.002618;AN=2;BaseQRankSum=-1.38;DP=1030745;ExcessHet=0;FS=1.596;InbreedingCoeff=0.8562;MLEAC=4,2;MLEAF=0.005236,0.002618;MQ=38.79;MQRankSum=0;QD=30.08;ReadPosRankSum=1.41;SOR=0.342"	GT:AD:DP:GQ:PL	"0/0:1590,0,0:1590:99:0,105,1575,105,1575,1575"
NC_020431.seq	41871	NC_020431.seq__41871	T	"*,A"	329795	.	"AC=0,0;AF=0.002618,0.005236;AN=2;BaseQRankSum=2.73;DP=1029053;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=2,4;MLEAF=0.002618,0.005236;MQ=48.72;MQRankSum=0;QD=28.1;ReadPosRankSum=0.5;SOR=0.536"	GT:AD:DP:GQ:PL	"0/0:1590,0,0:1590:99:0,105,1575,105,1575,1575"
NC_020431.seq	41873	NC_020431.seq__41873	T	"*,A"	361745	.	"AC=0,0;AF=0.002618,0.005236;AN=2;BaseQRankSum=0.835;DP=1029003;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=2,4;MLEAF=0.002618,0.005236;MQ=48.65;MQRankSum=0;QD=25.18;ReadPosRankSum=2.69;SOR=0.906"	GT:AD:DP:GQ:PL	"0/0:1590,0,0:1590:99:0,105,1575,105,1575,1575"
NC_020431.seq	41933	NC_020431.seq__41933	A	C	4395500	.	AC=0;AF=0.099;AN=2;BaseQRankSum=1.53;DP=1030594;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=34.59;ReadPosRankSum=0.448;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	42008	NC_020431.seq__42008	G	A	154259	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.242;DP=1032266;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.67;ReadPosRankSum=1.16;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	42039	NC_020431.seq__42039	G	A	147148	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.114;DP=1032056;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=-0.357;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,105,1575"
NC_020431.seq	42161	NC_020431.seq__42161	T	G	1024010	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.277;DP=1025513;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.4;ReadPosRankSum=0.029;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1667,0:1667:99:0,120,1800"
NC_020431.seq	42232	NC_020431.seq__42232	G	A	131641	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.335;DP=988871;ExcessHet=36.1762;FS=0;InbreedingCoeff=-0.0697;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.177;QD=34.97;ReadPosRankSum=-0.708;SOR=0.626	GT:AD:DP:GQ:PL	"0/0:1513,0:1513:99:0,120,1800"
NC_020431.seq	42247	NC_020431.seq__42247	A	C	200195	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.31;DP=955024;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=0.011;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1513,0:1513:99:0,120,1800"
NC_020431.seq	42277	NC_020431.seq__42277	G	T	22429500	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.088;DP=948489;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=29.6;ReadPosRankSum=-0.895;SOR=0.7	GT:AD:DP:GQ:PL	"1/1:5,1478:1483:99:56347,4259,0"
NC_020431.seq	42313	NC_020431.seq__42313	C	T	156433	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.521;DP=946270;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.002;QD=27.91;ReadPosRankSum=1.89;SOR=0.545	GT:AD:DP:GQ:PL	"0/0:1488,0:1488:99:0,120,1800"
NC_020431.seq	42320	NC_020431.seq__42320	G	C	861304	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.799;DP=946317;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.67;ReadPosRankSum=-0.052;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1488,0:1488:99:0,120,1800"
NC_020431.seq	42323	NC_020431.seq__42323	T	G	790124	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.07;DP=946120;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.75;ReadPosRankSum=0.065;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1488,0:1488:99:0,120,1800"
NC_020431.seq	42553	NC_020431.seq__42553	C	T	148075	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.38;DP=947664;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.36;ReadPosRankSum=1.19;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1488,0:1488:99:0,120,1800"
NC_020431.seq	42557	NC_020431.seq__42557	C	T	7165810	.	AC=2;AF=0.147;AN=2;BaseQRankSum=-0.276;DP=978318;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=112;MLEAF=0.147;MQ=60;MQRankSum=0;QD=32.63;ReadPosRankSum=0.286;SOR=0.713	GT:AD:DP:GQ:PL	"1/1:34,1759:1793:99:63833,4034,0"
NC_020431.seq	42617	NC_020431.seq__42617	T	G	1134460	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4;DP=1001329;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=51.96;MQRankSum=0;QD=26.87;ReadPosRankSum=0.729;SOR=0.802	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	42728	NC_020431.seq__42728	T	C	44504300	.	AC=2;AF=0.999;AN=2;BaseQRankSum=-0.291;DP=1171491;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0014;MLEAC=737;MLEAF=0.999;MQ=58.74;MQRankSum=0;QD=29.26;ReadPosRankSum=0.771;SOR=0.616	GT:AD:DP:GQ:PL	"1/1:3,1555:1560:99:69677,4610,0"
NC_020431.seq	42737	NC_020431.seq__42737	T	C	51573400	.	AC=2;AF=1;AN=2;BaseQRankSum=-0.316;DP=1159157;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=0;QD=30.65;ReadPosRankSum=0.701;SOR=0.804	GT:AD:DP:GQ:PL	"1/1:0,1738:1741:99:77845,5309,0"
NC_020431.seq	42908	NC_020431.seq__42908	A	G	5086370	.	AC=0;AF=0.183;AN=2;BaseQRankSum=0.349;DP=1110490;ExcessHet=-0;FS=0;InbreedingCoeff=0.9828;MLEAC=140;MLEAF=0.183;MQ=60;MQRankSum=0;QD=32.36;ReadPosRankSum=0.289;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43020	NC_020431.seq__43020	T	C	313710	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.053;DP=1106578;ExcessHet=0;FS=3.054;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=0.354;SOR=0.542	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43114	NC_020431.seq__43114	T	G	270031	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.31;DP=1106724;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.018;QD=26.82;ReadPosRankSum=-0.157;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43213	NC_020431.seq__43213	G	A	170882	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.042;DP=1106997;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=7.33;QD=29.24;ReadPosRankSum=-1.522;SOR=0.633	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43225	NC_020431.seq__43225	A	G	5380260	.	AC=0;AF=0.102;AN=2;BaseQRankSum=0.188;DP=1117170;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=78;MLEAF=0.102;MQ=60;MQRankSum=0;QD=25.87;ReadPosRankSum=0.161;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43284	NC_020431.seq__43284	G	A	236679	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.04;DP=1112045;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.052;QD=29.49;ReadPosRankSum=-0.199;SOR=0.447	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43291	NC_020431.seq__43291	A	C	1688260	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.23;DP=1114408;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=59.99;MQRankSum=8.11;QD=25.75;ReadPosRankSum=0.671;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43359	NC_020431.seq__43359	A	C	197594	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.969;DP=1114129;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.065;QD=31.68;ReadPosRankSum=0.532;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43411	NC_020431.seq__43411	G	A	1145300	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.801;DP=1115087;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=25.02;ReadPosRankSum=-0.863;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43484	NC_020431.seq__43484	T	C	172240	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-3.468;DP=1114985;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.21;ReadPosRankSum=-0.083;SOR=0.603	GT:AD:DP:GQ:PL	"0/0:1590,0:1590:99:0,120,1800"
NC_020431.seq	43511	NC_020431.seq__43511	A	C	26652900	.	AC=2;AF=0.533;AN=2;BaseQRankSum=0.894;DP=1139885;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=407;MLEAF=0.533;MQ=60;MQRankSum=0;QD=31.71;ReadPosRankSum=0.194;SOR=0.658	GT:AD:DP:GQ:PL	"1/1:12,1656:1668:99:61518,4497,0"
NC_020431.seq	43522	NC_020431.seq__43522	C	A	290609	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.24;DP=1129059;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.014;QD=30.18;ReadPosRankSum=-1.165;SOR=0.567	GT:AD:DP:GQ:PL	"0/0:1646,0:1646:99:0,120,1800"
NC_020431.seq	43816	NC_020431.seq__43816	C	T	351233	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.66;DP=1132312;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=3.88;QD=27.89;ReadPosRankSum=0.603;SOR=0.612	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	43832	NC_020431.seq__43832	T	G	296497	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.85;DP=1132349;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.22;ReadPosRankSum=-0.124;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	43920	NC_020431.seq__43920	A	C	31917.8	.	AC=0;AF=0.002994;AN=2;BaseQRankSum=-0.493;DP=1136960;ExcessHet=0.0097;FS=0;InbreedingCoeff=0.7992;MLEAC=2;MLEAF=0.002994;MQ=4.95;MQRankSum=0;QD=27.73;ReadPosRankSum=1.73;SOR=0.797	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	43955	NC_020431.seq__43955	C	T	427311	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.531;DP=1133173;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.009;QD=32.82;ReadPosRankSum=1.06;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	43971	NC_020431.seq__43971	A	C	103559	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.291;DP=1133204;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.21;ReadPosRankSum=1.73;SOR=0.229	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	43981	NC_020431.seq__43981	A	C	185360	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.5;DP=1133422;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.043;QD=28.08;ReadPosRankSum=1.45;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	44029	NC_020431.seq__44029	G	A	191680	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.754;DP=1133601;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.71;ReadPosRankSum=0.165;SOR=0.438	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	44106	NC_020431.seq__44106	C	T	170899	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.895;DP=1134636;ExcessHet=0.0425;FS=0;InbreedingCoeff=0.4964;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=0.829;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	44195	NC_020431.seq__44195	A	C	208936	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.97;DP=1134551;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.068;QD=24.82;ReadPosRankSum=-0.809;SOR=0.765	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	44196	NC_020431.seq__44196	G	A	297899	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.739;DP=1134639;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.63;ReadPosRankSum=1.06;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1607,0:1607:99:0,120,1800"
NC_020431.seq	44205	NC_020431.seq__44205	A	G	32029200	.	AC=2;AF=0.618;AN=2;BaseQRankSum=-0.036;DP=1154895;ExcessHet=-0;FS=0;InbreedingCoeff=0.9972;MLEAC=472;MLEAF=0.618;MQ=60;MQRankSum=0;QD=30.53;ReadPosRankSum=-0.027;SOR=0.649	GT:AD:DP:GQ:PL	"1/1:7,1704:1711:99:64693,4891,0"
NC_020431.seq	44278	NC_020431.seq__44278	G	C	26872100	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.023;DP=1144645;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=30.53;ReadPosRankSum=0.021;SOR=0.71	GT:AD:DP:GQ:PL	"1/1:16,1640:1659:99:61801,4392,0"
NC_020431.seq	44320	NC_020431.seq__44320	T	G	646679	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.792;DP=1136051;ExcessHet=0;FS=2.107;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=37.34;ReadPosRankSum=0.956;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	44351	NC_020431.seq__44351	T	C	892804	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.369;DP=1134916;ExcessHet=0;FS=3.144;InbreedingCoeff=0.9996;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.76;ReadPosRankSum=-0.537;SOR=0.723	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	44407	NC_020431.seq__44407	C	A	878542	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.06;DP=1135376;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.4;ReadPosRankSum=1.05;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	44419	NC_020431.seq__44419	C	T	26883800	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.055;DP=1148789;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.1;ReadPosRankSum=-0.061;SOR=0.645	GT:AD:DP:GQ:PGT:PID:PL	"1/1:13,1750:1763:99:1|1:44419_C_T:75269,4724,0"
NC_020431.seq	44429	NC_020431.seq__44429	G	T	160012	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.367;DP=1154404;ExcessHet=0.0028;FS=1.65;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.018;QD=31.47;ReadPosRankSum=0.22;SOR=0.378	GT:AD:DP:GQ:PL	"0/0:1762,0:1762:99:0,120,1800"
NC_020431.seq	44452	NC_020431.seq__44452	T	G	241585	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.1;DP=1102553;ExcessHet=0;FS=3.099;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=32.56;ReadPosRankSum=0.372;SOR=0.527	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44521	NC_020431.seq__44521	T	G	171729	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.365;DP=1102505;ExcessHet=0.0028;FS=1.521;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=22.34;ReadPosRankSum=0.903;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44614	NC_020431.seq__44614	T	A	221915	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.329;DP=1102350;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.004;QD=33.61;ReadPosRankSum=0.077;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44744	NC_020431.seq__44744	T	G	1212820	.	AC=0;AF=0.039;AN=2;BaseQRankSum=1.21;DP=1102567;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=0.419;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44782	NC_020431.seq__44782	T	G	653882	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.57;DP=1102261;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=34.31;ReadPosRankSum=-0.234;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44807	NC_020431.seq__44807	C	T	467793	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.73;DP=1102907;ExcessHet=0;FS=0;InbreedingCoeff=0.9987;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.035;QD=30.9;ReadPosRankSum=0.776;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44823	NC_020431.seq__44823	C	T	47786	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.044;DP=1103391;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.85;ReadPosRankSum=-0.482;SOR=0.248	GT:AD:DP:GQ:PL	"0/0:1587,0:1587:99:0,120,1800"
NC_020431.seq	44869	NC_020431.seq__44869	G	A	41732400	.	AC=2;AF=0.89;AN=2;BaseQRankSum=-0.237;DP=1152475;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=31.27;ReadPosRankSum=0.07;SOR=0.632	GT:AD:DP:GQ:PL	"1/1:0,1587:1587:99:71468,4850,0"
NC_020431.seq	44902	NC_020431.seq__44902	A	C	411141	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.4;DP=1116559;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.32;ReadPosRankSum=-0.089;SOR=0.45	GT:AD:DP:GQ:PL	"0/0:1548,0:1548:99:0,120,1800"
NC_020431.seq	44948	NC_020431.seq__44948	T	"A,*"	294255	.	"AC=0,0;AF=0.005236,0.002618;AN=2;BaseQRankSum=1.3;DP=1115667;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4,2;MLEAF=0.005236,0.002618;MQ=33.62;MQRankSum=0;QD=32.32;ReadPosRankSum=0.547;SOR=0.624"	GT:AD:DP:GQ:PL	"0/0:1548,0,0:1548:99:0,120,1800,120,1800,1800"
NC_020431.seq	45055	NC_020431.seq__45055	T	G	2626980	.	AC=0;AF=0.058;AN=2;BaseQRankSum=1.26;DP=1115820;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=29.17;ReadPosRankSum=0.03;SOR=0.628	GT:AD:DP:GQ:PL	"0/0:1548,0:1548:99:0,120,1800"
NC_020431.seq	45059	NC_020431.seq__45059	A	C	950235	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.35;DP=1114708;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.1;ReadPosRankSum=0.829;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1548,0:1548:99:0,120,1800"
NC_020431.seq	45165	NC_020431.seq__45165	T	C	26449900	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.016;DP=1123939;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=33.16;ReadPosRankSum=0.177;SOR=0.652	GT:AD:DP:GQ:PL	"1/1:16,1637:1655:99:62107,4346,0"
NC_020431.seq	45230	NC_020431.seq__45230	T	G	199041	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.2;DP=1108474;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.055;QD=35.26;ReadPosRankSum=-0.297;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45356	NC_020431.seq__45356	T	C	1275.54	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.949;DP=1109680;ExcessHet=3.2156;FS=0;InbreedingCoeff=-0.0098;MLEAC=5;MLEAF=0.006545;MQ=59.93;MQRankSum=-9.783;QD=0.24;ReadPosRankSum=-0.022;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45368	NC_020431.seq__45368	C	T	47953	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.67;DP=1109811;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=59.96;MQRankSum=15.23;QD=33.77;ReadPosRankSum=2.82;SOR=0.702	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45371	NC_020431.seq__45371	C	T	868.63	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-1.072;DP=1109618;ExcessHet=3.0962;FS=0;InbreedingCoeff=-0.0077;MLEAC=5;MLEAF=0.006545;MQ=59.98;MQRankSum=-8.928;QD=0.16;ReadPosRankSum=-1.147;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45390	NC_020431.seq__45390	T	C	352.15	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.188;DP=1109543;ExcessHet=3.0953;FS=2.406;InbreedingCoeff=-0.0059;MLEAC=2;MLEAF=0.002618;MQ=95.48;MQRankSum=-8.389;QD=0.28;ReadPosRankSum=-1.085;SOR=1.135	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45391	NC_020431.seq__45391	G	A	158869	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.205;DP=1108923;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=59.98;MQRankSum=13.36;QD=34.32;ReadPosRankSum=1.2;SOR=0.529	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45394	NC_020431.seq__45394	C	T	114794	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.819;DP=1108873;ExcessHet=0;FS=2.93;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=59.96;MQRankSum=12.55;QD=33.56;ReadPosRankSum=0.018;SOR=0.329	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45501	NC_020431.seq__45501	C	T	273680	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.959;DP=1108960;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.87;ReadPosRankSum=1.85;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45542	NC_020431.seq__45542	T	C	684125	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.815;DP=1110018;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=34.35;ReadPosRankSum=-0.153;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45560	NC_020431.seq__45560	A	G	368825	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.53;DP=1109725;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.084;QD=29.2;ReadPosRankSum=-1.3;SOR=0.495	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45571	NC_020431.seq__45571	T	G	255208	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.96;DP=1109731;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.04;ReadPosRankSum=0.609;SOR=0.749	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	45676	NC_020431.seq__45676	G	T	157688	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.695;DP=1086452;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.67;ReadPosRankSum=1.91;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1635,0:1635:99:0,120,1800"
NC_020431.seq	45680	NC_020431.seq__45680	C	T	1223360	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.04;DP=1086184;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=24.24;ReadPosRankSum=1.12;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1635,0:1635:99:0,120,1800"
NC_020431.seq	45740	NC_020431.seq__45740	T	C	2464450	.	AC=0;AF=0.273;AN=0;BaseQRankSum=2.93;DP=1047536;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=36;MLEAF=0.273;MQ=16.68;MQRankSum=0;QD=27.48;ReadPosRankSum=2.44;SOR=0.414	GT:AD:DP:PL	"./.:1586,0:1586:0,0,0"
NC_020431.seq	45743	NC_020431.seq__45743	T	G	142644	.	AC=0;AF=0.002747;AN=2;BaseQRankSum=2.8;DP=1037489;ExcessHet=0.0179;FS=0;InbreedingCoeff=0.6653;MLEAC=2;MLEAF=0.002747;MQ=15.06;MQRankSum=-0.047;QD=32.63;ReadPosRankSum=-0.057;SOR=0.177	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	45753	NC_020431.seq__45753	A	G	124459	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.95;DP=1028016;ExcessHet=0;FS=3.054;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.77;ReadPosRankSum=1.16;SOR=0.222	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	45762	NC_020431.seq__45762	A	C	4700830	.	AC=0;AF=0.186;AN=2;BaseQRankSum=1.68;DP=1029866;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=28.59;ReadPosRankSum=0.701;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:1579,0:1579:99:0,120,1800"
NC_020431.seq	45796	NC_020431.seq__45796	T	G	158988	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.22;DP=1029370;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.04;ReadPosRankSum=-0.012;SOR=0.414	GT:AD:DP:GQ:PL	"0/0:1572,0:1572:99:0,120,1800"
NC_020431.seq	45813	NC_020431.seq__45813	T	G	25990800	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.29;DP=1018533;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=28.06;ReadPosRankSum=0.209;SOR=0.601	GT:AD:DP:GQ:PL	"1/1:8,1561:1569:99:68498,4442,0"
NC_020431.seq	45818	NC_020431.seq__45818	G	T	26249100	.	AC=2;AF=0.524;AN=2;BaseQRankSum=0.463;DP=1021742;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=400;MLEAF=0.524;MQ=60;MQRankSum=0;QD=31.41;ReadPosRankSum=-0.319;SOR=0.583	GT:AD:DP:GQ:PL	"1/1:9,1575:1584:99:59058,4391,0"
NC_020431.seq	45819	NC_020431.seq__45819	A	C	179278	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.21;DP=1027929;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.135;QD=30.61;ReadPosRankSum=-0.313;SOR=0.81	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	45845	NC_020431.seq__45845	T	C	1101640	.	AC=0;AF=0.039;AN=2;BaseQRankSum=0.209;DP=1026942;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=31.67;ReadPosRankSum=-0.37;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	45854	NC_020431.seq__45854	C	T	2931070	.	AC=0;AF=0.076;AN=2;BaseQRankSum=0.787;DP=1032174;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=58;MLEAF=0.076;MQ=60;MQRankSum=0;QD=32.71;ReadPosRankSum=0.997;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	45942	NC_020431.seq__45942	G	C	108139	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.79;DP=1031416;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.64;ReadPosRankSum=0.138;SOR=0.588	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	45970	NC_020431.seq__45970	T	G	105221	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.59;DP=1031374;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.12;ReadPosRankSum=-0.067;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	45994	NC_020431.seq__45994	A	C	640.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-39.34;DP=1031433;ExcessHet=3.0103;FS=82.065;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=-0.001;QD=0.09;ReadPosRankSum=1.34;SOR=12.423	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	46029	NC_020431.seq__46029	A	G	190598	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.283;DP=1032288;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.85;ReadPosRankSum=0.139;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	46071	NC_020431.seq__46071	G	T	39117300	.	AC=2;AF=0.89;AN=2;BaseQRankSum=4.01;DP=1137434;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=32.99;ReadPosRankSum=0.662;SOR=0.301	GT:AD:DP:GQ:PL	"1/1:2,1657:1659:99:60064,4941,0"
NC_020431.seq	46151	NC_020431.seq__46151	A	C	153369	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.162;DP=1108955;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.46;ReadPosRankSum=-0.647;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1653,0:1653:99:0,120,1800"
NC_020431.seq	46191	NC_020431.seq__46191	T	G	7929450	.	AC=0;AF=0.157;AN=2;BaseQRankSum=1.05;DP=1121231;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=120;MLEAF=0.157;MQ=60;MQRankSum=0;QD=24.88;ReadPosRankSum=0.281;SOR=0.495	GT:AD:DP:GQ:PL	"0/0:1653,0:1653:99:0,120,1800"
NC_020431.seq	46266	NC_020431.seq__46266	C	A	28302500	.	AC=2;AF=0.545;AN=2;BaseQRankSum=-0.125;DP=1167354;ExcessHet=-0;FS=0;InbreedingCoeff=0.9868;MLEAC=416;MLEAF=0.545;MQ=60;MQRankSum=0;QD=30.78;ReadPosRankSum=0.021;SOR=0.683	GT:AD:DP:GQ:PL	"1/1:11,1816:1827:99:66202,5043,0"
NC_020431.seq	46310	NC_020431.seq__46310	A	C	152098	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.89;DP=1129896;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.008;QD=35;ReadPosRankSum=-0.58;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46364	NC_020431.seq__46364	A	C	562376	.	AC=0;AF=0.008043;AN=2;BaseQRankSum=1.94;DP=1128207;ExcessHet=0;FS=0;InbreedingCoeff=0.9949;MLEAC=6;MLEAF=0.008043;MQ=34.98;MQRankSum=0;QD=28.47;ReadPosRankSum=-0.74;SOR=0.797	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46432	NC_020431.seq__46432	A	C	5101700	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.834;DP=1128202;ExcessHet=-0;FS=0;InbreedingCoeff=0.9991;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=35.89;ReadPosRankSum=0.311;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46496	NC_020431.seq__46496	T	"A,C"	2483660	.	"AC=0,0;AF=0.016,0.037;AN=2;BaseQRankSum=0.707;DP=1129073;ExcessHet=-0;FS=0;InbreedingCoeff=0.9998;MLEAC=12,28;MLEAF=0.016,0.037;MQ=60;MQRankSum=0;QD=34.59;ReadPosRankSum=-0.32;SOR=0.699"	GT:AD:DP:GQ:PL	"0/0:1638,0,0:1638:99:0,120,1800,120,1800,1800"
NC_020431.seq	46501	NC_020431.seq__46501	T	C	1191980	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.306;DP=1126895;ExcessHet=0;FS=0;InbreedingCoeff=0.9991;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.87;ReadPosRankSum=0.251;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46552	NC_020431.seq__46552	T	G	397917	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.39;DP=1127268;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.06;QD=28.49;ReadPosRankSum=1.81;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46589	NC_020431.seq__46589	A	G	215455	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.399;DP=1126800;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.077;QD=29.59;ReadPosRankSum=1.34;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1638,0:1638:99:0,120,1800"
NC_020431.seq	46666	NC_020431.seq__46666	T	"G,*"	557775	.	"AC=0,0;AF=0.005236,0.003927;AN=2;BaseQRankSum=0.849;DP=1126619;ExcessHet=0;FS=0;InbreedingCoeff=0.8553;MLEAC=4,3;MLEAF=0.005236,0.003927;MQ=46.11;MQRankSum=0.076;QD=26.34;ReadPosRankSum=1.39;SOR=0.673"	GT:AD:DP:GQ:PL	"0/0:1638,0,0:1638:99:0,120,1800,120,1800,1800"
NC_020431.seq	46693	NC_020431.seq__46693	T	C	27368300	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.012;DP=1129603;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=0.157;SOR=0.657	GT:AD:DP:GQ:PL	"1/1:6,1496:1507:99:59298,4504,0"
NC_020431.seq	46864	NC_020431.seq__46864	T	C	161632	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.27;DP=1108606;ExcessHet=0.0427;FS=0.582;InbreedingCoeff=0.3706;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.81;ReadPosRankSum=0.381;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	46867	NC_020431.seq__46867	A	"*,C"	476807	.	"AC=0,0;AF=0.006601,0.013;AN=2;BaseQRankSum=0.591;DP=1114922;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4,8;MLEAF=0.006601,0.013;MQ=10.53;MQRankSum=0;QD=32.64;ReadPosRankSum=0.342;SOR=0.671"	GT:AD:DP:GQ:PL	"0/0:1644,0,0:1644:99:0,120,1800,120,1800,1800"
NC_020431.seq	46923	NC_020431.seq__46923	C	T	303810	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.618;DP=1108626;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=1.22;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	46948	NC_020431.seq__46948	C	T	1330750	.	AC=0;AF=0.021;AN=2;BaseQRankSum=-0.487;DP=1109255;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=-0.012;QD=28.7;ReadPosRankSum=-0.405;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	46958	NC_020431.seq__46958	A	C	816149	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.695;DP=1108406;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=32.78;ReadPosRankSum=0.546;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	46980	NC_020431.seq__46980	A	C	595137	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.232;DP=1106986;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=37.43;ReadPosRankSum=0.549;SOR=0.509	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47118	NC_020431.seq__47118	A	G	176774	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.889;DP=1106322;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.01;ReadPosRankSum=0.762;SOR=0.358	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47204	NC_020431.seq__47204	T	G	4955000	.	AC=0;AF=0.099;AN=2;BaseQRankSum=1.14;DP=1107911;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=28.25;ReadPosRankSum=0.18;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47275	NC_020431.seq__47275	T	G	177305	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.25;DP=1105909;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.649;QD=28.19;ReadPosRankSum=1.16;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47285	NC_020431.seq__47285	A	C	867787	.	AC=0;AF=0.034;AN=2;BaseQRankSum=1.4;DP=1106901;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=29.01;ReadPosRankSum=0.328;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47301	NC_020431.seq__47301	C	T	1744500	.	AC=0;AF=0.05;AN=2;BaseQRankSum=-0.077;DP=1105468;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=38;MLEAF=0.05;MQ=60;MQRankSum=0;QD=30.59;ReadPosRankSum=0.586;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47302	NC_020431.seq__47302	C	T	102700	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.17;DP=1104874;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.48;ReadPosRankSum=0.191;SOR=0.399	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47305	NC_020431.seq__47305	T	C	262399	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=7.37;DP=1105226;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.67;ReadPosRankSum=0.652;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47316	NC_020431.seq__47316	G	A	216279	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.96;DP=1105209;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.84;ReadPosRankSum=0.25;SOR=0.842	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47372	NC_020431.seq__47372	A	G	84488	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.09;DP=1105033;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.5;ReadPosRankSum=0.334;SOR=0.417	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47426	NC_020431.seq__47426	G	A	369196	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.35;DP=1105743;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.075;QD=35.55;ReadPosRankSum=1.58;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47492	NC_020431.seq__47492	C	T	894788	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.302;DP=1105900;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0.025;QD=31.15;ReadPosRankSum=0.114;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47517	NC_020431.seq__47517	T	C	158088	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.22;DP=1106007;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.179;QD=32.13;ReadPosRankSum=-0.31;SOR=0.793	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47547	NC_020431.seq__47547	G	A	1114710	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.153;DP=1107824;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.84;ReadPosRankSum=-0.478;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1644,0:1644:99:0,120,1800"
NC_020431.seq	47644	NC_020431.seq__47644	G	A	27274800	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.006;DP=1116302;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=27.32;ReadPosRankSum=0.105;SOR=0.86	GT:AD:DP:GQ:PL	"1/1:10,1797:1807:99:68056,5028,0"
NC_020431.seq	47651	NC_020431.seq__47651	T	G	4961550	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.981;DP=1116322;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=26.86;ReadPosRankSum=0.421;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	47664	NC_020431.seq__47664	A	C	775348	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.6;DP=1116856;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=24.26;ReadPosRankSum=0.387;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	47685	NC_020431.seq__47685	T	G	354248	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.059;DP=1117183;ExcessHet=0;FS=2.183;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.51;ReadPosRankSum=1.79;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	47778	NC_020431.seq__47778	C	T	103961	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.334;DP=1079523;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.83;ReadPosRankSum=0.448;SOR=0.324	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47811	NC_020431.seq__47811	A	C	416972	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.74;DP=1080265;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=26.18;ReadPosRankSum=-0.106;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47818	NC_020431.seq__47818	T	G	198049	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.021;DP=1080258;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=37.94;ReadPosRankSum=-0.799;SOR=0.78	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47826	NC_020431.seq__47826	C	A	96149	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.238;DP=1080126;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.37;ReadPosRankSum=0.885;SOR=0.394	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47849	NC_020431.seq__47849	A	C	203143	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.69;DP=1079853;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.056;QD=27.75;ReadPosRankSum=-0.167;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47865	NC_020431.seq__47865	T	G	282366	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.73;DP=1079746;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.72;ReadPosRankSum=0.81;SOR=0.786	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	47897	NC_020431.seq__47897	C	T	178190	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.48;DP=1079265;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.192;QD=24.59;ReadPosRankSum=0.902;SOR=0.741	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48013	NC_020431.seq__48013	C	T	86708	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.474;DP=1079033;ExcessHet=0.0028;FS=1.772;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.21;ReadPosRankSum=1.85;SOR=0.717	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48108	NC_020431.seq__48108	C	T	1669930	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.858;DP=1079505;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.67;ReadPosRankSum=-0.001;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48196	NC_020431.seq__48196	T	C	155115	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.273;DP=1076804;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=34.86;ReadPosRankSum=-0.255;SOR=0.356	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48485	NC_020431.seq__48485	G	A	1052800	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.308;DP=1076905;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=35.48;ReadPosRankSum=0.832;SOR=0.562	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48665	NC_020431.seq__48665	T	G	5001390	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.654;DP=1084521;ExcessHet=-0;FS=0;InbreedingCoeff=0.9927;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=0.592;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48673	NC_020431.seq__48673	T	G	798492	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.07;DP=1078290;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.46;ReadPosRankSum=0.108;SOR=0.74	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48704	NC_020431.seq__48704	G	A	159180	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.439;DP=1077554;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.24;ReadPosRankSum=0.773;SOR=0.833	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48714	NC_020431.seq__48714	T	G	357780	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.92;DP=1077950;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=38.63;ReadPosRankSum=-0.015;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48725	NC_020431.seq__48725	T	G	330922	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.079;DP=1078057;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=0.241;SOR=0.416	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48825	NC_020431.seq__48825	T	G	293314	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.957;DP=1077693;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.32;ReadPosRankSum=-0.143;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48911	NC_020431.seq__48911	C	T	1051610	.	AC=0;AF=0.047;AN=2;BaseQRankSum=0.571;DP=1079560;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=36;MLEAF=0.047;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=0.181;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	48991	NC_020431.seq__48991	T	G	106919	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.76;DP=1078212;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.55;ReadPosRankSum=0.313;SOR=0.572	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49060	NC_020431.seq__49060	C	T	231891	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.164;DP=1078303;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=0.284;SOR=0.737	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49135	NC_020431.seq__49135	C	T	193206	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.08;DP=1078511;ExcessHet=0.0028;FS=2.219;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.18;ReadPosRankSum=-0.573;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49171	NC_020431.seq__49171	G	A	180368	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.086;DP=1078326;ExcessHet=0.0028;FS=1.757;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.05;QD=30.07;ReadPosRankSum=-0.353;SOR=0.666	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49285	NC_020431.seq__49285	A	C	331573	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.38;DP=1078525;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.53;ReadPosRankSum=0.475;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49576	NC_020431.seq__49576	G	A	168849	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.49;DP=1083906;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.026;QD=31.65;ReadPosRankSum=-0.451;SOR=0.831	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49585	NC_020431.seq__49585	A	G	208681	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.18;DP=1084331;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.065;QD=33.74;ReadPosRankSum=-0.675;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49720	NC_020431.seq__49720	A	C	179429	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.668;DP=1084520;ExcessHet=0.0028;FS=1.668;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.039;QD=31.8;ReadPosRankSum=1.74;SOR=0.539	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49768	NC_020431.seq__49768	T	G	1017250	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.034;DP=1087930;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0.032;QD=27.96;ReadPosRankSum=0.086;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49804	NC_020431.seq__49804	T	C	178110	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.386;DP=1086996;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.64;ReadPosRankSum=-0.145;SOR=0.477	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49837	NC_020431.seq__49837	C	T	920081	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.011;DP=1089740;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.69;ReadPosRankSum=0.478;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49874	NC_020431.seq__49874	T	G	1026410	.	AC=0;AF=0.025;AN=2;BaseQRankSum=0.929;DP=1092570;ExcessHet=-0;FS=0;InbreedingCoeff=0.946;MLEAC=19;MLEAF=0.025;MQ=60;MQRankSum=0;QD=28.92;ReadPosRankSum=-0.389;SOR=0.598	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49889	NC_020431.seq__49889	G	T	311.84	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.69;DP=1092620;ExcessHet=3.0273;FS=5.31;InbreedingCoeff=-0.0027;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=-1.284;SOR=0.937	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49903	NC_020431.seq__49903	G	C	57.84	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.25;DP=1092200;ExcessHet=3.0273;FS=0;InbreedingCoeff=-0.0026;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.14;ReadPosRankSum=0.365;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49977	NC_020431.seq__49977	C	G	177764	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.765;DP=1091895;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=-0.24;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	49995	NC_020431.seq__49995	G	C	95619	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.54;DP=1091756;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.34;ReadPosRankSum=0.369;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1484,0:1484:99:0,120,1800"
NC_020431.seq	50019	NC_020431.seq__50019	A	G	46964600	.	AC=2;AF=0.992;AN=2;BaseQRankSum=-0.429;DP=1210617;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=758;MLEAF=0.992;MQ=60;MQRankSum=0;QD=32.72;ReadPosRankSum=0.48;SOR=0.334	GT:AD:DP:GQ:PL	"1/1:6,1723:1734:99:64136,4920,0"
NC_020431.seq	50070	NC_020431.seq__50070	G	A	238867	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.66;DP=1146380;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.038;QD=31.47;ReadPosRankSum=1.5;SOR=0.708	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50071	NC_020431.seq__50071	C	A	109890	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.04;DP=1146329;ExcessHet=0;FS=1.658;InbreedingCoeff=0.9987;MLEAC=6;MLEAF=0.007853;MQ=59.98;MQRankSum=0;QD=32.01;ReadPosRankSum=0.251;SOR=0.344	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50076	NC_020431.seq__50076	G	A	163716	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.175;DP=1146334;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.039;QD=29.03;ReadPosRankSum=0.82;SOR=0.472	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50118	NC_020431.seq__50118	T	C	229597	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.017;DP=1146161;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.148;QD=29.3;ReadPosRankSum=-2.334;SOR=0.509	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50141	NC_020431.seq__50141	A	C	3413370	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.538;DP=1146551;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=32.38;ReadPosRankSum=0.328;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50250	NC_020431.seq__50250	A	C	184198	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-3.047;DP=1142979;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.48;ReadPosRankSum=-0.048;SOR=0.38	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	50313	NC_020431.seq__50313	A	G	25996600	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.123;DP=1138392;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.72;ReadPosRankSum=0.13;SOR=0.726	GT:AD:DP:GQ:PL	"1/1:13,1636:1649:99:58194,4450,0"
NC_020431.seq	50315	NC_020431.seq__50315	G	A	361584	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.07;DP=1098841;ExcessHet=0;FS=1.706;InbreedingCoeff=0.9924;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.114;QD=29.54;ReadPosRankSum=0.164;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50321	NC_020431.seq__50321	G	A	1669230	.	AC=0;AF=0.035;AN=2;BaseQRankSum=1.42;DP=1097962;ExcessHet=-0;FS=0;InbreedingCoeff=0.961;MLEAC=27;MLEAF=0.035;MQ=60;MQRankSum=0;QD=37.18;ReadPosRankSum=0.086;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50412	NC_020431.seq__50412	T	G	347250	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.12;DP=1091280;ExcessHet=0;FS=3.054;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.068;QD=31.33;ReadPosRankSum=1.55;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50444	NC_020431.seq__50444	C	T	507444	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-1.408;DP=1089837;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=-0.368;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50469	NC_020431.seq__50469	G	A	515922	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.982;DP=1089974;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.22;ReadPosRankSum=0.29;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50546	NC_020431.seq__50546	A	C	95762	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.105;DP=1089823;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.79;ReadPosRankSum=-0.451;SOR=0.397	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50644	NC_020431.seq__50644	T	G	592877	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.885;DP=1090538;ExcessHet=0;FS=2.158;InbreedingCoeff=0.994;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=-0.308;SOR=0.764	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50659	NC_020431.seq__50659	T	G	3322770	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.25;DP=1097161;ExcessHet=-0;FS=0;InbreedingCoeff=0.9995;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=25.07;ReadPosRankSum=0.011;SOR=0.729	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50664	NC_020431.seq__50664	A	G	300972	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.255;DP=1096703;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.019;QD=35.9;ReadPosRankSum=1.07;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50686	NC_020431.seq__50686	T	G	920893	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.01;DP=1097271;ExcessHet=0;FS=0;InbreedingCoeff=0.9987;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=33.21;ReadPosRankSum=0.124;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50702	NC_020431.seq__50702	C	T	3325300	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.675;DP=1095692;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=24.75;ReadPosRankSum=0.247;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50708	NC_020431.seq__50708	A	C	220168	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.069;DP=1095200;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.7;ReadPosRankSum=-0.092;SOR=0.578	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50715	NC_020431.seq__50715	A	G	206814	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.79;DP=1095353;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.47;ReadPosRankSum=1.2;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1553,0:1553:99:0,120,1800"
NC_020431.seq	50748	NC_020431.seq__50748	A	"C,*"	1138890	.	"AC=0,0;AF=0.024,0.002618;AN=2;BaseQRankSum=3.14;DP=1097096;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=18,2;MLEAF=0.024,0.002618;MQ=55.94;MQRankSum=0;QD=33.74;ReadPosRankSum=0.04;SOR=0.669"	GT:AD:DP:GQ:PL	"0/0:1553,0,0:1553:99:0,120,1800,120,1800,1800"
NC_020431.seq	50758	NC_020431.seq__50758	A	"*,C"	666022	.	"AC=0,0;AF=0.002618,0.016;AN=2;BaseQRankSum=0.359;DP=1097355;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=2,12;MLEAF=0.002618,0.016;MQ=52.81;MQRankSum=0;QD=20.22;ReadPosRankSum=0.457;SOR=0.654"	GT:AD:DP:GQ:PL	"0/0:1553,0,0:1553:99:0,120,1800,120,1800,1800"
NC_020431.seq	50785	NC_020431.seq__50785	C	"T,*"	1495360	.	"AC=0,0;AF=0.007853,0.013;AN=2;BaseQRankSum=-0.363;DP=1096231;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=6,10;MLEAF=0.007853,0.013;MQ=38.4;MQRankSum=0;QD=34.77;ReadPosRankSum=0.123;SOR=0.758"	GT:AD:DP:GQ:PL	"0/0:1553,0,0:1553:99:0,120,1800,120,1800,1800"
NC_020431.seq	50831	NC_020431.seq__50831	T	C	461757	.	AC=0;AF=0.017;AN=2;BaseQRankSum=0.05;DP=1097293;ExcessHet=0;FS=0;InbreedingCoeff=0.9212;MLEAC=13;MLEAF=0.017;MQ=60;MQRankSum=0;QD=31.76;ReadPosRankSum=0.237;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1488,0:1488:99:0,120,1800"
NC_020431.seq	50847	NC_020431.seq__50847	T	G	2089620	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.08;DP=1098013;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=29.67;ReadPosRankSum=0.934;SOR=0.852	GT:AD:DP:GQ:PL	"0/0:1443,0:1443:99:0,120,1800"
NC_020431.seq	50962	NC_020431.seq__50962	A	C	272384	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.36;DP=1072236;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.7;ReadPosRankSum=1.57;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1443,0:1443:99:0,120,1800"
NC_020431.seq	51110	NC_020431.seq__51110	A	G	44615	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.502;DP=1072423;ExcessHet=0.0028;FS=4.31;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.85;ReadPosRankSum=-1.216;SOR=0.169	GT:AD:DP:GQ:PL	"0/0:1443,0:1443:99:0,120,1800"
NC_020431.seq	51175	NC_020431.seq__51175	A	C	278799	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.42;DP=1072891;ExcessHet=0;FS=1.264;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.72;ReadPosRankSum=0.429;SOR=0.508	GT:AD:DP:GQ:PL	"0/0:1443,0:1443:99:0,120,1800"
NC_020431.seq	51241	NC_020431.seq__51241	C	A	727826	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.048;DP=1077131;ExcessHet=0;FS=1.056;InbreedingCoeff=0.709;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.14;ReadPosRankSum=-0.613;SOR=0.467	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51269	NC_020431.seq__51269	A	C	290998	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.28;DP=1076085;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.011;QD=34.17;ReadPosRankSum=-0.494;SOR=0.448	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51301	NC_020431.seq__51301	A	C	229524	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.2;DP=1076546;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.029;QD=26.03;ReadPosRankSum=0.694;SOR=0.485	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51384	NC_020431.seq__51384	C	T	175660	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.599;DP=1081777;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.79;ReadPosRankSum=-2.237;SOR=0.788	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51496	NC_020431.seq__51496	T	G	101806	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.784;DP=1081730;ExcessHet=0.0171;FS=0;InbreedingCoeff=0.4973;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.08;ReadPosRankSum=1.01;SOR=0.735	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51503	NC_020431.seq__51503	T	C	486565	.	AC=0;AF=0.009162;AN=2;BaseQRankSum=0.437;DP=1083100;ExcessHet=0.0602;FS=0;InbreedingCoeff=0.2791;MLEAC=7;MLEAF=0.009162;MQ=60;MQRankSum=0;QD=32.59;ReadPosRankSum=0.661;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51564	NC_020431.seq__51564	A	C	559131	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.71;DP=1089101;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.012;QD=34.99;ReadPosRankSum=0.379;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51588	NC_020431.seq__51588	T	G	133278	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.196;DP=1088261;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=32.88;ReadPosRankSum=0.746;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51609	NC_020431.seq__51609	G	T	6891.36	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.467;DP=1087501;ExcessHet=3.0675;FS=0;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=0.82;ReadPosRankSum=-0.824;SOR=0.739	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	51619	NC_020431.seq__51619	A	G	267199	.	AC=1;AF=0.114;AN=2;BaseQRankSum=0.663;DP=1096792;ExcessHet=23.08;FS=0;InbreedingCoeff=-0.1145;MLEAC=88;MLEAF=0.115;MQ=60.68;MQRankSum=0;QD=1.83;ReadPosRankSum=-0.1;SOR=0.729	GT:AD:DP:GQ:PL	"0/1:1566,189:1755:99:1683,0,53588"
NC_020431.seq	51770	NC_020431.seq__51770	A	C	24319.1	.	AC=1;AF=0.017;AN=2;BaseQRankSum=-0.502;DP=1090352;ExcessHet=3.5355;FS=0;InbreedingCoeff=-0.0177;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=0.75;ReadPosRankSum=0.097;SOR=0.676	GT:AD:DP:GQ:PL	"0/1:1592,210:1802:99:2096,0,52940"
NC_020431.seq	51808	NC_020431.seq__51808	C	T	129512	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.83;DP=1090176;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.002;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=34.78;ReadPosRankSum=0.297;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1668,0:1668:99:0,120,1800"
NC_020431.seq	51984	NC_020431.seq__51984	A	C	7438060	.	AC=1;AF=0.13;AN=2;BaseQRankSum=1.28;DP=1111785;ExcessHet=-0;FS=0;InbreedingCoeff=0.6634;MLEAC=99;MLEAF=0.13;MQ=60;MQRankSum=0;QD=33.1;ReadPosRankSum=0.044;SOR=0.705	GT:AD:DP:GQ:PL	"0/1:181,1500:1681:99:51725,0,1794"
NC_020431.seq	52059	NC_020431.seq__52059	C	T	152543	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.74;DP=1100032;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.76;ReadPosRankSum=1.59;SOR=0.575	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52138	NC_020431.seq__52138	T	C	235176	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.21;DP=1100292;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=9.22;QD=33.43;ReadPosRankSum=0.566;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52197	NC_020431.seq__52197	C	T	398224	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.26;DP=1101018;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.005;QD=29.84;ReadPosRankSum=0.031;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52403	NC_020431.seq__52403	T	C	1509350	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.208;DP=1105935;ExcessHet=0;FS=0;InbreedingCoeff=0.6559;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.19;ReadPosRankSum=-0.135;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52547	NC_020431.seq__52547	C	T	273131	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-1.545;DP=1100718;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=34.75;ReadPosRankSum=0.475;SOR=0.749	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52655	NC_020431.seq__52655	A	G	759867	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.07;DP=1101303;ExcessHet=0;FS=0;InbreedingCoeff=0.7089;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.76;ReadPosRankSum=-0.148;SOR=0.779	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52734	NC_020431.seq__52734	C	T	53631.7	.	AC=0;AF=0.063;AN=2;BaseQRankSum=-0.821;DP=1106324;ExcessHet=10.4206;FS=0;InbreedingCoeff=-0.0681;MLEAC=47;MLEAF=0.062;MQ=62.68;MQRankSum=0;QD=0.72;ReadPosRankSum=0.118;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52772	NC_020431.seq__52772	G	A	1930830	.	AC=0;AF=0.031;AN=2;BaseQRankSum=-1.123;DP=1103309;ExcessHet=-0;FS=0;InbreedingCoeff=0.8279;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=34.28;ReadPosRankSum=-0.587;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	52937	NC_020431.seq__52937	T	G	383279	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.217;DP=1098386;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.79;ReadPosRankSum=0.103;SOR=0.659	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	53197	NC_020431.seq__53197	C	T	464.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.852;DP=1098366;ExcessHet=3.0103;FS=0.993;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.26;ReadPosRankSum=0.405;SOR=0.887	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	53330	NC_020431.seq__53330	T	G	802665	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.994;DP=1100296;ExcessHet=0;FS=0;InbreedingCoeff=0.5947;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=-0.197;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	53402	NC_020431.seq__53402	A	C	397185	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.27;DP=1099964;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.35;ReadPosRankSum=0.255;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	53573	NC_020431.seq__53573	A	G	24015900	.	AC=1;AF=0.462;AN=2;BaseQRankSum=0.236;DP=1125581;ExcessHet=-0;FS=0;InbreedingCoeff=0.7074;MLEAC=352;MLEAF=0.461;MQ=60;MQRankSum=0;QD=34.74;ReadPosRankSum=0.062;SOR=0.686	GT:AD:DP:GQ:PL	"0/1:207,1616:1823:99:56472,0,2638"
NC_020431.seq	53820	NC_020431.seq__53820	G	A	118050	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.21;DP=1101452;ExcessHet=3.0103;FS=1.827;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.56;ReadPosRankSum=0.774;SOR=0.468	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53848	NC_020431.seq__53848	C	T	44999.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.22;DP=1101607;ExcessHet=3.0103;FS=3.391;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=1.12;SOR=0.404	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53910	NC_020431.seq__53910	A	C	3338.06	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.675;DP=1098769;ExcessHet=3.0274;FS=0.857;InbreedingCoeff=-0.0033;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=1.05;ReadPosRankSum=0.002;SOR=0.818	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53912	NC_020431.seq__53912	T	C	4647860	.	AC=0;AF=0.081;AN=2;BaseQRankSum=-0.362;DP=1113445;ExcessHet=-0;FS=0;InbreedingCoeff=0.754;MLEAC=62;MLEAF=0.081;MQ=60;MQRankSum=0;QD=32.85;ReadPosRankSum=0.05;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53952	NC_020431.seq__53952	A	C	295822	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.6;DP=1112853;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.34;ReadPosRankSum=1.6;SOR=0.762	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53966	NC_020431.seq__53966	T	G	296584	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.61;DP=1112748;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.57;ReadPosRankSum=0.942;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53967	NC_020431.seq__53967	A	C	1119080	.	AC=0;AF=0.02;AN=2;BaseQRankSum=-1.137;DP=1115273;ExcessHet=0;FS=0;InbreedingCoeff=0.796;MLEAC=15;MLEAF=0.02;MQ=60;MQRankSum=0;QD=33.11;ReadPosRankSum=-0.198;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	53978	NC_020431.seq__53978	T	C	265191	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=-4.055;DP=1117158;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=32.14;ReadPosRankSum=-0.178;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	54041	NC_020431.seq__54041	G	A	185095	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=3.56;DP=1117770;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=1.46;QD=31.48;ReadPosRankSum=0.7;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1803,0:1803:99:0,120,1800"
NC_020431.seq	54047	NC_020431.seq__54047	A	C	338201	.	AC=1;AF=0.135;AN=2;BaseQRankSum=-0.362;DP=1140724;ExcessHet=28.7664;FS=0;InbreedingCoeff=-0.136;MLEAC=102;MLEAF=0.134;MQ=61.15;MQRankSum=0;QD=1.7;ReadPosRankSum=0.087;SOR=0.721	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1729,173:1902:99:0|1:54047_A_C:2118,0,72772"
NC_020431.seq	54050	NC_020431.seq__54050	G	T	407987	.	AC=1;AF=0.158;AN=2;BaseQRankSum=0.277;DP=1144872;ExcessHet=40.2964;FS=0;InbreedingCoeff=-0.1689;MLEAC=121;MLEAF=0.158;MQ=60.75;MQRankSum=0;QD=1.68;ReadPosRankSum=-0.111;SOR=0.719	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1719,174:1893:99:0|1:54047_A_C:2081,0,72856"
NC_020431.seq	54075	NC_020431.seq__54075	G	T	28439600	.	AC=2;AF=0.609;AN=2;BaseQRankSum=0.939;DP=1212265;ExcessHet=-0;FS=0;InbreedingCoeff=0.5995;MLEAC=469;MLEAF=0.614;MQ=60.06;MQRankSum=0;QD=33.02;ReadPosRankSum=0.097;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:18,1904:1922:99:72981,5197,0"
NC_020431.seq	54076	NC_020431.seq__54076	A	C	81162	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.078;DP=1174710;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.69;ReadPosRankSum=0.95;SOR=0.552	GT:AD:DP:GQ:PL	"0/0:1940,0:1940:99:0,120,1800"
NC_020431.seq	54077	NC_020431.seq__54077	A	T	37983.2	.	AC=1;AF=0.027;AN=2;BaseQRankSum=-0.227;DP=1173700;ExcessHet=4.4844;FS=0;InbreedingCoeff=-0.0299;MLEAC=21;MLEAF=0.027;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=0.176;SOR=0.725	GT:AD:DP:GQ:PL	"0/1:1741,172:1913:99:774,0,61057"
NC_020431.seq	54102	NC_020431.seq__54102	A	C	185289	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.675;DP=1171457;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.39;ReadPosRankSum=-0.293;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1857,0:1857:99:0,120,1800"
NC_020431.seq	54141	NC_020431.seq__54141	C	A	332991	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.95;DP=1171176;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=-0.001;QD=24.85;ReadPosRankSum=2.31;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:1857,0:1857:99:0,120,1800"
NC_020431.seq	54142	NC_020431.seq__54142	T	A	332873	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.39;DP=1171170;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=-0.027;QD=29.38;ReadPosRankSum=2.39;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1857,0:1857:99:0,120,1800"
NC_020431.seq	54222	NC_020431.seq__54222	C	T	564121	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.312;DP=1172506;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.014;QD=34.46;ReadPosRankSum=-0.833;SOR=0.584	GT:AD:DP:GQ:PL	"0/0:1857,0:1857:99:0,120,1800"
NC_020431.seq	54253	NC_020431.seq__54253	C	T	22983.3	.	AC=1;AF=0.016;AN=2;BaseQRankSum=-0.137;DP=1172706;ExcessHet=3.4599;FS=0;InbreedingCoeff=-0.0169;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=0.74;ReadPosRankSum=-0.384;SOR=0.683	GT:AD:DP:GQ:PL	"0/1:1714,169:1884:99:547,0,58044"
NC_020431.seq	54274	NC_020431.seq__54274	C	"T,*"	4837520	.	"AC=0,0;AF=0.085,0.001309;AN=2;BaseQRankSum=0.144;DP=1173149;ExcessHet=-0;FS=0;InbreedingCoeff=0.7966;MLEAC=65,1;MLEAF=0.085,0.001309;MQ=59.02;MQRankSum=0;QD=33.98;ReadPosRankSum=0.358;SOR=0.745"	GT:AD:DP:GQ:PL	"0/0:1904,0,0:1904:99:0,120,1800,120,1800,1800"
NC_020431.seq	54276	NC_020431.seq__54276	A	G	136902	.	AC=0;AF=0.001312;AN=2;BaseQRankSum=-1.773;DP=1173960;ExcessHet=3.0103;FS=0.97;InbreedingCoeff=-0.0014;MLEAC=1;MLEAF=0.001312;MQ=42.46;MQRankSum=0;QD=31.82;ReadPosRankSum=0.001;SOR=0.819	GT:AD:DP:GQ:PL	"0/0:1904,0:1904:99:0,120,1800"
NC_020431.seq	54294	NC_020431.seq__54294	A	T	314924	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.051;DP=1173733;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.8;QD=34.24;ReadPosRankSum=1.19;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1904,0:1904:99:0,120,1800"
NC_020431.seq	54305	NC_020431.seq__54305	G	T	29135800	.	AC=2;AF=0.572;AN=2;BaseQRankSum=0.323;DP=1194002;ExcessHet=0;FS=0;InbreedingCoeff=0.8515;MLEAC=440;MLEAF=0.576;MQ=60;MQRankSum=0;QD=27.73;ReadPosRankSum=0.175;SOR=0.681	GT:AD:DP:GQ:PL	"1/1:10,1917:1927:99:71915,5369,0"
NC_020431.seq	54367	NC_020431.seq__54367	T	G	412489	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.35;DP=1121837;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.01;QD=29.28;ReadPosRankSum=0.243;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	54680	NC_020431.seq__54680	T	G	156516	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.57;DP=1120589;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.015;QD=33.46;ReadPosRankSum=0.885;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55052	NC_020431.seq__55052	A	G	135719	.	AC=1;AF=0.123;AN=2;BaseQRankSum=1.14;DP=1131990;ExcessHet=40.458;FS=0;InbreedingCoeff=-0.1526;MLEAC=94;MLEAF=0.123;MQ=60.59;MQRankSum=0;QD=0.83;ReadPosRankSum=0.118;SOR=0.678	GT:AD:DP:GQ:PL	"0/1:1619,197:1816:99:2020,0,55227"
NC_020431.seq	55266	NC_020431.seq__55266	A	G	309878	.	AC=1;AF=0.126;AN=2;BaseQRankSum=-0.139;DP=1136917;ExcessHet=29.2246;FS=0;InbreedingCoeff=-0.1327;MLEAC=96;MLEAF=0.126;MQ=61.02;MQRankSum=0;QD=1.81;ReadPosRankSum=-0.02;SOR=0.714	GT:AD:DP:GQ:PL	"0/1:1503,217:1720:99:3028,0,53133"
NC_020431.seq	55319	NC_020431.seq__55319	C	T	333766	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.43;DP=1134845;ExcessHet=0.0001;FS=1.169;InbreedingCoeff=0.7962;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=33.67;ReadPosRankSum=0.903;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1748,0:1748:99:0,120,1800"
NC_020431.seq	55331	NC_020431.seq__55331	G	C	219550	.	AC=1;AF=0.143;AN=2;BaseQRankSum=0.099;DP=1134769;ExcessHet=42.855;FS=0;InbreedingCoeff=-0.1673;MLEAC=109;MLEAF=0.143;MQ=60.93;MQRankSum=0;QD=1.04;ReadPosRankSum=-0.013;SOR=0.709	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1572,222:1794:99:0|1:55331_G_C:4604,0,65168"
NC_020431.seq	55341	NC_020431.seq__55341	A	G	223731	.	AC=1;AF=0.147;AN=2;BaseQRankSum=1.68;DP=1135517;ExcessHet=45.9665;FS=0;InbreedingCoeff=-0.1736;MLEAC=112;MLEAF=0.147;MQ=60.37;MQRankSum=0;QD=1.02;ReadPosRankSum=0.007;SOR=0.699	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1585,232:1817:99:0|1:55331_G_C:4761,0,65556"
NC_020431.seq	55414	NC_020431.seq__55414	C	G	316205	.	AC=1;AF=0.123;AN=2;BaseQRankSum=-0.415;DP=1134938;ExcessHet=29.6003;FS=0;InbreedingCoeff=-0.1307;MLEAC=95;MLEAF=0.124;MQ=60.56;MQRankSum=0;QD=1.94;ReadPosRankSum=-0.056;SOR=0.697	GT:AD:DP:GQ:PL	"0/1:1629,223:1852:99:2765,0,56276"
NC_020431.seq	55442	NC_020431.seq__55442	C	T	254300	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.07;DP=1121063;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.83;ReadPosRankSum=0.012;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55541	NC_020431.seq__55541	C	T	1185170	.	AC=0;AF=0.031;AN=2;BaseQRankSum=-0.757;DP=1123535;ExcessHet=0;FS=0;InbreedingCoeff=0.7419;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.86;ReadPosRankSum=0.422;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55544	NC_020431.seq__55544	T	C	818540	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.21;DP=1121382;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=32.96;ReadPosRankSum=-1.128;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55689	NC_020431.seq__55689	C	T	3697.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.517;DP=1119873;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=70.07;MQRankSum=0;QD=1.32;ReadPosRankSum=0.51;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55766	NC_020431.seq__55766	C	T	271247	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.66;DP=1119893;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=3.63;QD=33.5;ReadPosRankSum=0.351;SOR=0.771	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55778	NC_020431.seq__55778	A	C	535188	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.535;DP=1120318;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=34.67;ReadPosRankSum=-0.548;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55826	NC_020431.seq__55826	T	C	1697810	.	AC=0;AF=0.026;AN=2;BaseQRankSum=2.05;DP=1125787;ExcessHet=0;FS=0;InbreedingCoeff=0.7946;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=34.49;ReadPosRankSum=-0.594;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	55848	NC_020431.seq__55848	G	C	109957	.	AC=1;AF=0.115;AN=2;BaseQRankSum=-0.31;DP=1116278;ExcessHet=32.6063;FS=0.927;InbreedingCoeff=-0.138;MLEAC=88;MLEAF=0.115;MQ=60.52;MQRankSum=0;QD=0.76;ReadPosRankSum=-0.062;SOR=0.784	GT:AD:DP:GQ:PL	"0/1:1517,199:1716:99:2274,0,53303"
NC_020431.seq	55883	NC_020431.seq__55883	C	T	27810700	.	AC=2;AF=0.619;AN=2;BaseQRankSum=-0.412;DP=1149545;ExcessHet=-0;FS=0;InbreedingCoeff=0.6302;MLEAC=480;MLEAF=0.628;MQ=60;MQRankSum=0;QD=33.78;ReadPosRankSum=0.01;SOR=0.691	GT:AD:DP:GQ:PL	"1/1:6,1726:1732:99:64633,4944,0"
NC_020431.seq	55937	NC_020431.seq__55937	T	G	656249	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.23;DP=1125829;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.91;ReadPosRankSum=-0.125;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1668,0:1668:99:0,120,1800"
NC_020431.seq	55974	NC_020431.seq__55974	A	C	698.82	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.668;DP=1124441;ExcessHet=3.016;FS=0.937;InbreedingCoeff=-0.002;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.54;ReadPosRankSum=0.722;SOR=0.931	GT:AD:DP:GQ:PL	"0/0:1668,0:1668:99:0,120,1800"
NC_020431.seq	55994	NC_020431.seq__55994	G	A	283807	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.506;DP=1124589;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.83;ReadPosRankSum=1.25;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1668,0:1668:99:0,120,1800"
NC_020431.seq	56031	NC_020431.seq__56031	G	A	532862	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.909;DP=1124435;ExcessHet=0;FS=4.563;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.025;QD=28.89;ReadPosRankSum=0.809;SOR=0.232	GT:AD:DP:GQ:PL	"0/0:1668,0:1668:99:0,120,1800"
NC_020431.seq	56044	NC_020431.seq__56044	A	G	27409200	.	AC=2;AF=0.533;AN=2;BaseQRankSum=0.078;DP=1145207;ExcessHet=-0;FS=0;InbreedingCoeff=0.8775;MLEAC=424;MLEAF=0.555;MQ=60;MQRankSum=0;QD=29.2;ReadPosRankSum=-0.092;SOR=0.665	GT:AD:DP:GQ:PL	"1/1:9,1672:1681:99:62737,4707,0"
NC_020431.seq	56177	NC_020431.seq__56177	C	A	165218	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.129;DP=1115177;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.2;ReadPosRankSum=0.642;SOR=0.793	GT:AD:DP:GQ:PL	"0/0:1641,0:1641:99:0,120,1800"
NC_020431.seq	56225	NC_020431.seq__56225	A	C	27421800	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.95;DP=1124213;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=37.08;ReadPosRankSum=0.203;SOR=0.57	GT:AD:DP:GQ:PL	"1/1:6,1714:1720:99:64932,4948,0"
NC_020431.seq	56294	NC_020431.seq__56294	T	G	134468	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.489;DP=1074356;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.42;ReadPosRankSum=-2.197;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	56356	NC_020431.seq__56356	A	C	154056	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.35;DP=1074275;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.009;QD=32.67;ReadPosRankSum=0.821;SOR=0.831	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	56387	NC_020431.seq__56387	C	T	252982	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.478;DP=1073956;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.99;ReadPosRankSum=-0.569;SOR=0.824	GT:AD:DP:GQ:PL	"0/0:1645,0:1645:99:0,120,1800"
NC_020431.seq	56517	NC_020431.seq__56517	A	C	124903	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.59;DP=1045278;ExcessHet=0.0028;FS=1.345;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.51;ReadPosRankSum=-1.011;SOR=0.292	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	56591	NC_020431.seq__56591	A	C	718127	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-1;DP=1026187;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.59;ReadPosRankSum=-0.276;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1552,0:1552:99:0,120,1800"
NC_020431.seq	56593	NC_020431.seq__56593	T	G	357752	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.38;DP=1026577;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.48;ReadPosRankSum=0.393;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1552,0:1552:99:0,120,1800"
NC_020431.seq	56608	NC_020431.seq__56608	T	G	113543	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.83;DP=1026613;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.15;ReadPosRankSum=-0.951;SOR=0.45	GT:AD:DP:GQ:PL	"0/0:1552,0:1552:99:0,120,1800"
NC_020431.seq	56610	NC_020431.seq__56610	G	T	25068200	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.592;DP=1037454;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=-0.787;SOR=0.682	GT:AD:DP:GQ:PL	"1/1:6,1570:1576:99:59531,4525,0"
NC_020431.seq	56612	NC_020431.seq__56612	T	G	841098	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.278;DP=1032945;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=25.1;ReadPosRankSum=0.026;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	56620	NC_020431.seq__56620	A	C	153129	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.73;DP=1032515;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.28;ReadPosRankSum=1.71;SOR=0.424	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	56624	NC_020431.seq__56624	T	G	173033	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.67;DP=1032493;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.6;ReadPosRankSum=0.535;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	56640	NC_020431.seq__56640	G	A	112684	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.88;DP=1032060;ExcessHet=0.0028;FS=1.41;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=23.03;ReadPosRankSum=-3.662;SOR=0.401	GT:AD:DP:GQ:PL	"0/0:1598,0:1598:99:0,120,1800"
NC_020431.seq	56693	NC_020431.seq__56693	C	A	25003700	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.905;DP=1047764;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=28.36;ReadPosRankSum=0.632;SOR=0.646	GT:AD:DP:GQ:PL	"1/1:9,1628:1637:99:61362,4511,0"
NC_020431.seq	56721	NC_020431.seq__56721	A	C	672966	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.86;DP=1058697;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0.037;QD=27.29;ReadPosRankSum=1.27;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56750	NC_020431.seq__56750	A	G	299460	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.37;DP=1057915;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.034;QD=27.27;ReadPosRankSum=0.453;SOR=0.556	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56764	NC_020431.seq__56764	T	A	776907	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.985;DP=1057387;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=59.73;MQRankSum=-0.911;QD=28.06;ReadPosRankSum=0.311;SOR=0.961	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56803	NC_020431.seq__56803	C	A	507030	.	AC=0;AF=0.017;AN=2;BaseQRankSum=3.62;DP=1051785;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=13;MLEAF=0.017;MQ=59.64;MQRankSum=-1.081;QD=31.85;ReadPosRankSum=-2.686;SOR=1.103	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56804	NC_020431.seq__56804	T	A	508519	.	AC=0;AF=0.017;AN=2;BaseQRankSum=2.61;DP=1051693;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=13;MLEAF=0.017;MQ=59.63;MQRankSum=-1.081;QD=30.48;ReadPosRankSum=-1.081;SOR=1.129	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56806	NC_020431.seq__56806	G	A	526483	.	AC=0;AF=0.017;AN=2;BaseQRankSum=1.36;DP=1051521;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=13;MLEAF=0.017;MQ=59.63;MQRankSum=-1.061;QD=31.17;ReadPosRankSum=-3.466;SOR=1.184	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	56886	NC_020431.seq__56886	G	T	2617370	.	AC=0;AF=0.045;AN=2;BaseQRankSum=0.732;DP=1056519;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=34;MLEAF=0.045;MQ=60;MQRankSum=0;QD=28.38;ReadPosRankSum=-0.01;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	57066	NC_020431.seq__57066	C	T	93630	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.607;DP=1055483;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7993;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=9.34;QD=26.16;ReadPosRankSum=-1.433;SOR=0.609	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	57134	NC_020431.seq__57134	G	A	328012	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.296;DP=1055945;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.67;ReadPosRankSum=0.57;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	57149	NC_020431.seq__57149	T	G	109045	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.51;DP=1056100;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.1;ReadPosRankSum=0.285;SOR=0.65	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	57163	NC_020431.seq__57163	A	G	26409000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.436;DP=1101313;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.08;ReadPosRankSum=-0.039;SOR=0.746	GT:AD:DP:GQ:PL	"1/1:22,1620:1642:99:60379,4157,0"
NC_020431.seq	57185	NC_020431.seq__57185	T	C	336756	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=2.37;DP=1061892;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=27.45;ReadPosRankSum=1.02;SOR=0.823	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57303	NC_020431.seq__57303	A	C	346925	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.449;DP=1061694;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.05;ReadPosRankSum=0.396;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57364	NC_020431.seq__57364	C	T	139328	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.31;DP=1061726;ExcessHet=0.0028;FS=1.207;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.68;ReadPosRankSum=-0.04;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57435	NC_020431.seq__57435	C	G	288293	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.55;DP=1061484;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=1.66;SOR=0.574	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57447	NC_020431.seq__57447	A	C	1203590	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.2;DP=1062198;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=-0.579;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57515	NC_020431.seq__57515	T	C	387175	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.13;DP=1060516;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=31;ReadPosRankSum=-0.816;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57521	NC_020431.seq__57521	T	G	185019	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.002;DP=1060194;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.032;QD=24.18;ReadPosRankSum=0.38;SOR=0.528	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57713	NC_020431.seq__57713	G	C	284964	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.084;DP=1059962;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.57;ReadPosRankSum=0.274;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57740	NC_020431.seq__57740	G	T	6853.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-2.115;DP=1060297;ExcessHet=3.0103;FS=1.854;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=1.3;ReadPosRankSum=-0.049;SOR=0.788	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	57889	NC_020431.seq__57889	A	C	179096	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.34;DP=1060334;ExcessHet=0;FS=2.068;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.05;ReadPosRankSum=0.264;SOR=0.459	GT:AD:DP:GQ:PL	"0/0:1465,0:1465:99:0,120,1800"
NC_020431.seq	58037	NC_020431.seq__58037	T	C	25847500	.	AC=2;AF=0.525;AN=2;BaseQRankSum=0.29;DP=1093151;ExcessHet=-0;FS=0;InbreedingCoeff=0.9633;MLEAC=401;MLEAF=0.525;MQ=60;MQRankSum=0;QD=30.75;ReadPosRankSum=0.011;SOR=0.608	GT:AD:DP:GQ:PL	"1/1:17,1595:1612:99:59709,4234,0"
NC_020431.seq	58052	NC_020431.seq__58052	A	C	2004370	.	AC=0;AF=0.037;AN=2;BaseQRankSum=2.08;DP=1096404;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=30.96;ReadPosRankSum=-0.546;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	58103	NC_020431.seq__58103	C	A	650665	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.282;DP=1096736;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=-0.132;SOR=0.479	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	58109	NC_020431.seq__58109	G	A	206162	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.365;DP=1096893;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=1.46;SOR=0.115	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	58140	NC_020431.seq__58140	T	G	534714	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.19;DP=1097725;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.04;QD=24.97;ReadPosRankSum=0.043;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	58195	NC_020431.seq__58195	C	T	2089380	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.07;DP=1099168;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.05;ReadPosRankSum=-0.084;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	58268	NC_020431.seq__58268	T	C	537677	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-1.963;DP=1045991;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.19;ReadPosRankSum=7.18;SOR=0.787	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58338	NC_020431.seq__58338	G	A	275478	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.4;DP=1050346;ExcessHet=0;FS=0.618;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=57.57;MQRankSum=0;QD=29.78;ReadPosRankSum=1.43;SOR=0.581	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58344	NC_020431.seq__58344	T	G	49935.5	.	AC=0;AF=0.042;AN=2;BaseQRankSum=-0.161;DP=1048262;ExcessHet=6.1375;FS=0.963;InbreedingCoeff=-0.0444;MLEAC=32;MLEAF=0.042;MQ=61.85;MQRankSum=0;QD=0.78;ReadPosRankSum=-1.617;SOR=0.572	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58359	NC_020431.seq__58359	T	A	31272.2	.	AC=0;AF=0.034;AN=2;BaseQRankSum=-0.025;DP=1048156;ExcessHet=5.7272;FS=0;InbreedingCoeff=-0.0388;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=0.6;ReadPosRankSum=-1.45;SOR=0.585	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58367	NC_020431.seq__58367	T	C	201285	.	AC=0;AF=0.034;AN=2;BaseQRankSum=-0.037;DP=1049688;ExcessHet=2.0696;FS=1.557;InbreedingCoeff=0.025;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=3.81;ReadPosRankSum=-1.109;SOR=0.612	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58396	NC_020431.seq__58396	G	C	11316.9	.	AC=0;AF=0.017;AN=2;BaseQRankSum=0.831;DP=1050043;ExcessHet=4.2113;FS=0;InbreedingCoeff=-0.0228;MLEAC=13;MLEAF=0.017;MQ=63.24;MQRankSum=0;QD=0.41;ReadPosRankSum=-1.042;SOR=0.761	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58402	NC_020431.seq__58402	A	G	8630.51	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.425;DP=1049531;ExcessHet=3.786;FS=0;InbreedingCoeff=-0.0187;MLEAC=10;MLEAF=0.013;MQ=69.9;MQRankSum=0;QD=0.54;ReadPosRankSum=-1.995;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58413	NC_020431.seq__58413	G	C	540855	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.845;DP=1051720;ExcessHet=0;FS=1.453;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.054;QD=33.44;ReadPosRankSum=1.63;SOR=0.585	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58425	NC_020431.seq__58425	T	G	285808	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=-1.412;DP=1053059;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6654;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=3.28;QD=32.89;ReadPosRankSum=1.59;SOR=0.624	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58429	NC_020431.seq__58429	T	C	5453.62	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=0.891;DP=1054194;ExcessHet=4.4237;FS=1.021;InbreedingCoeff=-0.0188;MLEAC=5;MLEAF=0.006545;MQ=68.31;MQRankSum=0;QD=0.65;ReadPosRankSum=-2.898;SOR=0.791	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58442	NC_020431.seq__58442	T	"C,G"	117163	.	"AC=0,0;AF=0.007853,0.005236;AN=2;BaseQRankSum=0.544;DP=1054867;ExcessHet=0.0026;FS=1.247;InbreedingCoeff=0.2508;MLEAC=6,4;MLEAF=0.007853,0.005236;MQ=63.05;MQRankSum=0;QD=9.17;ReadPosRankSum=-1.493;SOR=0.696"	GT:AD:DP:GQ:PL	"0/0:1633,0,0:1633:99:0,120,1800,120,1800,1800"
NC_020431.seq	58451	NC_020431.seq__58451	T	G	894413	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.315;DP=1057155;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=32.05;ReadPosRankSum=-0.2;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58452	NC_020431.seq__58452	A	C	426582	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.488;DP=1058522;ExcessHet=0;FS=3.099;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.36;ReadPosRankSum=0.112;SOR=0.548	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58479	NC_020431.seq__58479	T	G	299841	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.58;DP=1059439;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.95;ReadPosRankSum=1.7;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:1633,0:1633:99:0,120,1800"
NC_020431.seq	58509	NC_020431.seq__58509	T	G	1771370	.	AC=2;AF=0.029;AN=2;BaseQRankSum=3.34;DP=1061220;ExcessHet=-0;FS=1.741;InbreedingCoeff=0.9552;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=2.19;SOR=0.671	GT:AD:DP:GQ:PL	"1/1:45,1729:1774:99:61255,3707,0"
NC_020431.seq	58512	NC_020431.seq__58512	A	C	95090.2	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.24;DP=1062104;ExcessHet=0.0792;FS=0;InbreedingCoeff=0.396;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.76;ReadPosRankSum=-0.206;SOR=0.458	GT:AD:DP:GQ:PL	"0/0:1782,0:1782:99:0,120,1800"
NC_020431.seq	58526	NC_020431.seq__58526	T	G	28756500	.	AC=2;AF=0.584;AN=2;BaseQRankSum=2.9;DP=1109493;ExcessHet=-0;FS=0;InbreedingCoeff=0.9865;MLEAC=446;MLEAF=0.584;MQ=60;MQRankSum=0;QD=25.23;ReadPosRankSum=0.949;SOR=0.678	GT:AD:DP:GQ:PL	"1/1:8,1769:1777:99:65677,5024,0"
NC_020431.seq	58590	NC_020431.seq__58590	A	C	183485	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.08;DP=1093020;ExcessHet=0.0594;FS=0;InbreedingCoeff=0.4411;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.072;QD=26.66;ReadPosRankSum=-0.618;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	58591	NC_020431.seq__58591	T	G	159046	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.849;DP=1092806;ExcessHet=0.0594;FS=0;InbreedingCoeff=0.4412;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.019;QD=33.17;ReadPosRankSum=2.44;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1731,0:1731:99:0,120,1800"
NC_020431.seq	58698	NC_020431.seq__58698	C	T	47719	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.845;DP=1086616;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.96;ReadPosRankSum=2.76;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	58778	NC_020431.seq__58778	A	G	112748	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.184;DP=1086298;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=6.24;QD=25.37;ReadPosRankSum=1.32;SOR=0.567	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	58788	NC_020431.seq__58788	T	"G,*"	21767200	.	"AC=2,0;AF=0.7,0.132;AN=2;BaseQRankSum=1.63;DP=1090606;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=532,100;MLEAF=0.7,0.132;MQ=53.14;MQRankSum=0;QD=26.27;ReadPosRankSum=1.56;SOR=0.583"	GT:AD:DP:GQ:PL	"1/1:49,1438,0:1487:99:39076,3286,0,39219,4342,40275"
NC_020431.seq	58789	NC_020431.seq__58789	T	G	4056260	.	AC=0;AF=0.131;AN=2;BaseQRankSum=2.9;DP=1078961;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=100;MLEAF=0.131;MQ=57.66;MQRankSum=0;QD=25.73;ReadPosRankSum=2.79;SOR=0.774	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	58801	NC_020431.seq__58801	A	C	493081	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.135;DP=1071447;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.032;QD=29.33;ReadPosRankSum=1.64;SOR=0.586	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	58851	NC_020431.seq__58851	A	C	264111	.	AC=0;AF=0.004274;AN=0;BaseQRankSum=4.16;DP=1062864;ExcessHet=0.9607;FS=0;InbreedingCoeff=0.1254;MLEAC=2;MLEAF=0.002849;MQ=13.5;MQRankSum=5;QD=27.92;ReadPosRankSum=0.789;SOR=0.64	GT:AD:DP:PL	"./.:1465,0:1465:0,0,0"
NC_020431.seq	58988	NC_020431.seq__58988	T	G	859225	.	AC=0;AF=0.026;AN=2;BaseQRankSum=0.763;DP=1057693;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=-0.12;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59007	NC_020431.seq__59007	T	G	103422	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.007;DP=1056590;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.77;ReadPosRankSum=0.437;SOR=0.571	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59061	NC_020431.seq__59061	A	T	101601	.	AC=0;AF=0.002632;AN=2;BaseQRankSum=-0.46;DP=1056706;ExcessHet=0.0029;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002632;MQ=27.42;MQRankSum=0;QD=28.91;ReadPosRankSum=-0.296;SOR=0.609	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59207	NC_020431.seq__59207	T	C	1213520	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.072;DP=1058960;ExcessHet=0;FS=0;InbreedingCoeff=0.9937;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.57;ReadPosRankSum=0.252;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59232	NC_020431.seq__59232	A	C	1301820	.	AC=0;AF=0.038;AN=2;BaseQRankSum=1.17;DP=1059981;ExcessHet=-0;FS=0;InbreedingCoeff=0.9641;MLEAC=29;MLEAF=0.038;MQ=60;MQRankSum=0;QD=27.64;ReadPosRankSum=0.064;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59254	NC_020431.seq__59254	A	C	135098	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.813;DP=1057851;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.17;ReadPosRankSum=1.49;SOR=0.483	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59267	NC_020431.seq__59267	G	A	187689	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.424;DP=1058673;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.044;QD=22.81;ReadPosRankSum=-1.702;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59316	NC_020431.seq__59316	A	C	80979.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.396;DP=1058428;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.6;ReadPosRankSum=-0.232;SOR=0.548	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59563	NC_020431.seq__59563	A	C	168202	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.23;DP=1058295;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.65;ReadPosRankSum=2.12;SOR=0.335	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59638	NC_020431.seq__59638	G	A	238537	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.858;DP=1058772;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.046;QD=33.97;ReadPosRankSum=2.37;SOR=0.834	GT:AD:DP:GQ:PL	"0/0:1453,0:1453:99:0,120,1800"
NC_020431.seq	59676	NC_020431.seq__59676	G	C	26122500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.08;DP=1106881;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=34.87;ReadPosRankSum=0.132;SOR=0.766	GT:AD:DP:GQ:PL	"1/1:19,1564:1583:99:58068,3941,0"
NC_020431.seq	59688	NC_020431.seq__59688	T	G	157883	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.143;DP=1101268;ExcessHet=0.0028;FS=1.668;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.013;QD=30.6;ReadPosRankSum=0.424;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59730	NC_020431.seq__59730	G	C	283802	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.126;DP=1101039;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.009;QD=30.43;ReadPosRankSum=0.029;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59757	NC_020431.seq__59757	A	T	829756	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.109;DP=1101121;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=36.77;ReadPosRankSum=0.267;SOR=0.518	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59792	NC_020431.seq__59792	C	T	175773	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.353;DP=1101772;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.237;QD=32.31;ReadPosRankSum=0.375;SOR=0.526	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59818	NC_020431.seq__59818	A	G	105253	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.11;DP=1101868;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.13;ReadPosRankSum=-0.59;SOR=0.797	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59891	NC_020431.seq__59891	A	G	1015810	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.174;DP=1104497;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.3;ReadPosRankSum=-0.129;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59914	NC_020431.seq__59914	C	G	329387	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.12;DP=1105588;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.7;ReadPosRankSum=0.269;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	59939	NC_020431.seq__59939	T	G	514437	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.32;DP=1105309;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.66;ReadPosRankSum=0.007;SOR=0.811	GT:AD:DP:GQ:PL	"0/0:1568,0:1568:99:0,120,1800"
NC_020431.seq	60013	NC_020431.seq__60013	A	C	25202700	.	AC=2;AF=0.535;AN=2;BaseQRankSum=1.4;DP=1144699;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=409;MLEAF=0.535;MQ=60;MQRankSum=0;QD=33.02;ReadPosRankSum=1.54;SOR=0.731	GT:AD:DP:GQ:PL	"1/1:9,1763:1772:99:65403,4854,0"
NC_020431.seq	60043	NC_020431.seq__60043	G	A	147645	.	AC=0;AF=0.005249;AN=2;BaseQRankSum=0.866;DP=1133068;ExcessHet=0;FS=1.43;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005249;MQ=48.09;MQRankSum=0;QD=31.42;ReadPosRankSum=0.493;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1742,0:1742:99:0,120,1800"
NC_020431.seq	60192	NC_020431.seq__60192	A	C	1146830	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.42;DP=1134014;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.47;ReadPosRankSum=-0.318;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1742,0:1742:99:0,120,1800"
NC_020431.seq	60214	NC_020431.seq__60214	A	C	137628	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.12;DP=1134966;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.72;ReadPosRankSum=0.94;SOR=0.822	GT:AD:DP:GQ:PL	"0/0:1742,0:1742:99:0,120,1800"
NC_020431.seq	60219	NC_020431.seq__60219	C	A	2138280	.	AC=0;AF=0.037;AN=2;BaseQRankSum=2.2;DP=1139331;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=-0.31;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1742,0:1742:99:0,120,1800"
NC_020431.seq	60221	NC_020431.seq__60221	T	G	6634030	.	AC=2;AF=0.123;AN=2;BaseQRankSum=1.53;DP=1138531;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=35.52;ReadPosRankSum=0.352;SOR=0.638	GT:AD:DP:GQ:PL	"1/1:40,1698:1738:99:63256,3662,0"
NC_020431.seq	60308	NC_020431.seq__60308	G	A	27672100	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.1;DP=1142175;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=-0.056;SOR=0.714	GT:AD:DP:GQ:PL	"1/1:8,1743:1751:99:66299,4962,0"
NC_020431.seq	60575	NC_020431.seq__60575	A	C	190907	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.14;DP=1122312;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.058;QD=34.51;ReadPosRankSum=2.05;SOR=0.773	GT:AD:DP:GQ:PL	"0/0:1753,0:1753:99:0,120,1800"
NC_020431.seq	60652	NC_020431.seq__60652	G	A	6781990	.	AC=2;AF=0.123;AN=2;BaseQRankSum=0.009;DP=1132810;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=29.78;ReadPosRankSum=-0.128;SOR=0.684	GT:AD:DP:GQ:PL	"1/1:49,1834:1884:99:65862,3804,0"
NC_020431.seq	60778	NC_020431.seq__60778	G	A	171879	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.7;DP=1122209;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.72;ReadPosRankSum=0.195;SOR=0.734	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	60929	NC_020431.seq__60929	A	C	1736700	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.42;DP=1128570;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=34.24;ReadPosRankSum=0.853;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61029	NC_020431.seq__61029	A	T	107999	.	AC=0;AF=0.002639;AN=2;BaseQRankSum=-0.995;DP=1127528;ExcessHet=0.0029;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002639;MQ=41.5;MQRankSum=0;QD=27.72;ReadPosRankSum=-0.932;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61060	NC_020431.seq__61060	G	A	892467	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.41;DP=1126704;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=36.11;ReadPosRankSum=0.667;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61096	NC_020431.seq__61096	A	C	1727640	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.43;DP=1126917;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=34.22;ReadPosRankSum=0.174;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61113	NC_020431.seq__61113	T	G	594477	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.614;DP=1123281;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.096;QD=29.42;ReadPosRankSum=1.49;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61160	NC_020431.seq__61160	T	G	673288	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.315;DP=1125194;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.04;ReadPosRankSum=0.625;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:1691,0:1691:99:0,120,1800"
NC_020431.seq	61327	NC_020431.seq__61327	C	T	45350700	.	AC=2;AF=0.992;AN=2;BaseQRankSum=2.02;DP=1192231;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=758;MLEAF=0.992;MQ=60;MQRankSum=0;QD=25.48;ReadPosRankSum=0.31;SOR=0.363	GT:AD:DP:GQ:PL	"1/1:0,1718:1718:99:64062,5152,0"
NC_020431.seq	61521	NC_020431.seq__61521	G	A	194553	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.202;DP=1083708;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.44;ReadPosRankSum=-0.034;SOR=0.64	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	61620	NC_020431.seq__61620	T	C	1048220	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.607;DP=1083870;ExcessHet=0;FS=0;InbreedingCoeff=0.9994;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=0.342;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	61682	NC_020431.seq__61682	G	A	682553	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.296;DP=1085334;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.53;ReadPosRankSum=0.142;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	61944	NC_020431.seq__61944	C	G	415570	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.94;DP=1085727;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.58;ReadPosRankSum=1.64;SOR=0.49	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	61958	NC_020431.seq__61958	T	C	1262220	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.869;DP=1088409;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=0.2;SOR=0.83	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	61988	NC_020431.seq__61988	T	G	175233	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.37;DP=1087793;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.038;QD=26.55;ReadPosRankSum=-0.086;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	62144	NC_020431.seq__62144	C	T	170179	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.665;DP=1087637;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=-0.014;SOR=0.402	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	62169	NC_020431.seq__62169	A	G	891394	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.021;DP=1090095;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.1;ReadPosRankSum=0.058;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	62215	NC_020431.seq__62215	C	T	294190	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.74;DP=1088222;ExcessHet=0;FS=0;InbreedingCoeff=0.9924;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.22;ReadPosRankSum=0.372;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1540,0:1540:99:0,120,1800"
NC_020431.seq	62222	NC_020431.seq__62222	G	T	28162600	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.259;DP=1158173;ExcessHet=-0;FS=0;InbreedingCoeff=0.9998;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=24.98;ReadPosRankSum=0.225;SOR=0.667	GT:AD:DP:GQ:PL	"1/1:11,1710:1721:99:63590,4776,0"
NC_020431.seq	62232	NC_020431.seq__62232	A	C	151314	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.325;DP=1118914;ExcessHet=0.0028;FS=3.189;InbreedingCoeff=0.9469;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.64;ReadPosRankSum=-1.59;SOR=0.497	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62254	NC_020431.seq__62254	T	G	719177	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.69;DP=1121280;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.97;ReadPosRankSum=1.33;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62272	NC_020431.seq__62272	T	C	343225	.	AC=0;AF=0.005333;AN=2;BaseQRankSum=1.67;DP=1117904;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005333;MQ=29.26;MQRankSum=0;QD=28.61;ReadPosRankSum=0.728;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62278	NC_020431.seq__62278	A	C	411183	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.58;DP=1116347;ExcessHet=0;FS=3.329;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.3;ReadPosRankSum=1;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62322	NC_020431.seq__62322	C	T	281461	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.658;DP=1111074;ExcessHet=0;FS=0;InbreedingCoeff=0.9924;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.4;ReadPosRankSum=-1.271;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62334	NC_020431.seq__62334	A	C	186079	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.679;DP=1110741;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.69;ReadPosRankSum=0.325;SOR=0.539	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62341	NC_020431.seq__62341	C	T	165454	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.487;DP=1110756;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.028;QD=28.79;ReadPosRankSum=0.166;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62358	NC_020431.seq__62358	G	T	850734	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.513;DP=1110147;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.004;QD=32.22;ReadPosRankSum=-0.499;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62359	NC_020431.seq__62359	G	A	1077400	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.002;DP=1110174;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.68;ReadPosRankSum=-0.399;SOR=0.562	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62377	NC_020431.seq__62377	C	T	369413	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.13;DP=1108919;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.52;ReadPosRankSum=1.13;SOR=0.579	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62394	NC_020431.seq__62394	A	"C,*"	3639100	.	"AC=0,0;AF=0.09,0.005236;AN=2;BaseQRankSum=0.649;DP=1109098;ExcessHet=-0;FS=0;InbreedingCoeff=0.9848;MLEAC=69,4;MLEAF=0.09,0.005236;MQ=57.11;MQRankSum=0;QD=30.56;ReadPosRankSum=-0.125;SOR=0.68"	GT:AD:DP:GQ:PL	"0/0:1559,0,0:1559:99:0,120,1800,120,1800,1800"
NC_020431.seq	62403	NC_020431.seq__62403	C	"T,*"	591386	.	"AC=0,0;AF=0.005236,0.005236;AN=2;BaseQRankSum=0.25;DP=1104307;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4,4;MLEAF=0.005236,0.005236;MQ=40.57;MQRankSum=0;QD=27.8;ReadPosRankSum=1.04;SOR=0.705"	GT:AD:DP:GQ:PL	"0/0:1559,0,0:1559:99:0,120,1800,120,1800,1800"
NC_020431.seq	62418	NC_020431.seq__62418	T	G	179677	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.734;DP=1101631;ExcessHet=0.0028;FS=2.107;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.71;ReadPosRankSum=0.862;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62428	NC_020431.seq__62428	A	C	181973	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.16;DP=1100835;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.039;QD=27;ReadPosRankSum=-1.015;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62431	NC_020431.seq__62431	G	C	164865	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.528;DP=1100231;ExcessHet=3.0103;FS=1.655;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=3.31;SOR=0.384	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62436	NC_020431.seq__62436	G	T	134709	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.893;DP=1100135;ExcessHet=3.0103;FS=1.655;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=30.66;ReadPosRankSum=3.74;SOR=0.412	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62437	NC_020431.seq__62437	A	C	133112	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.28;DP=1100149;ExcessHet=3.0103;FS=1.655;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=34.25;ReadPosRankSum=3.51;SOR=0.414	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62510	NC_020431.seq__62510	A	G	280179	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.9;DP=1099974;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.46;ReadPosRankSum=0.123;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62547	NC_020431.seq__62547	T	G	1160890	.	AC=0;AF=0.02;AN=2;BaseQRankSum=1.67;DP=1101576;ExcessHet=0;FS=0;InbreedingCoeff=0.9317;MLEAC=15;MLEAF=0.02;MQ=60;MQRankSum=0;QD=28.06;ReadPosRankSum=-0.094;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62550	NC_020431.seq__62550	A	C	253662	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=3.41;DP=1101733;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6645;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=31.2;ReadPosRankSum=0.3;SOR=0.867	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62605	NC_020431.seq__62605	T	G	194531	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.221;DP=1101668;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.077;QD=29.01;ReadPosRankSum=-0.663;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1559,0:1559:99:0,120,1800"
NC_020431.seq	62656	NC_020431.seq__62656	G	A	24680200	.	AC=2;AF=0.53;AN=2;BaseQRankSum=-1.136;DP=1115293;ExcessHet=0;FS=0;InbreedingCoeff=0.9937;MLEAC=405;MLEAF=0.53;MQ=60;MQRankSum=0;QD=33.03;ReadPosRankSum=0.197;SOR=0.721	GT:AD:DP:GQ:PL	"1/1:19,1603:1625:99:56465,4032,0"
NC_020431.seq	62680	NC_020431.seq__62680	T	G	159050	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.4;DP=1097486;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.8565;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.018;QD=33.1;ReadPosRankSum=1.53;SOR=0.525	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62717	NC_020431.seq__62717	C	T	209782	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.741;DP=1071321;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7944;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.74;ReadPosRankSum=1.96;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62739	NC_020431.seq__62739	A	C	194074	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.953;DP=1069837;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7987;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.055;QD=26.67;ReadPosRankSum=1.16;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62742	NC_020431.seq__62742	G	T	162439	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.9;DP=1069579;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7987;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.08;ReadPosRankSum=-1.757;SOR=0.57	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62753	NC_020431.seq__62753	A	C	72062	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.16;DP=1069596;ExcessHet=0.0085;FS=3.054;InbreedingCoeff=0.7989;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.84;ReadPosRankSum=1.2;SOR=0.219	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62763	NC_020431.seq__62763	T	G	1117700	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.19;DP=1068437;ExcessHet=-0;FS=2.107;InbreedingCoeff=0.946;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=33.23;ReadPosRankSum=0.495;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62804	NC_020431.seq__62804	T	G	1133300	.	AC=0;AF=0.034;AN=2;BaseQRankSum=1.15;DP=1067954;ExcessHet=0;FS=1.445;InbreedingCoeff=0.9023;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=28.36;ReadPosRankSum=1.09;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62805	NC_020431.seq__62805	C	A	1755340	.	AC=0;AF=0.035;AN=2;BaseQRankSum=0.869;DP=1068039;ExcessHet=-0;FS=0;InbreedingCoeff=0.9434;MLEAC=27;MLEAF=0.035;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=1.02;SOR=0.673	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62813	NC_020431.seq__62813	A	C	311237	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.316;DP=1065873;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=5.57;QD=28.14;ReadPosRankSum=0.622;SOR=0.51	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62818	NC_020431.seq__62818	A	C	412722	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.228;DP=1065705;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.66;ReadPosRankSum=-0.408;SOR=0.578	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62859	NC_020431.seq__62859	G	A	206401	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.578;DP=1065532;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.065;QD=31.65;ReadPosRankSum=1.01;SOR=0.785	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62877	NC_020431.seq__62877	A	C	731713	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.54;DP=1066505;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.91;ReadPosRankSum=-0.413;SOR=0.718	GT:AD:DP:GQ:PL	"0/0:1536,0:1536:99:0,120,1800"
NC_020431.seq	62914	NC_020431.seq__62914	A	"*,C"	1900390	.	"AC=0,0;AF=0.043,0.00266;AN=2;BaseQRankSum=3.76;DP=1054023;ExcessHet=-0;FS=0;InbreedingCoeff=0.9896;MLEAC=32,2;MLEAF=0.043,0.00266;MQ=13.02;MQRankSum=0;QD=30.05;ReadPosRankSum=-8.414;SOR=0.696"	GT:AD:DP:GQ:PL	"0/0:1587,0,0:1587:99:0,120,1800,120,1800,1800"
NC_020431.seq	62928	NC_020431.seq__62928	A	G	42443800	.	AC=2;AF=0.89;AN=2;BaseQRankSum=-0.405;DP=1076044;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=37.15;ReadPosRankSum=0.057;SOR=0.668	GT:AD:DP:GQ:PL	"1/1:0,1650:1654:99:73431,5031,0"
NC_020431.seq	62933	NC_020431.seq__62933	A	C	1255070	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.52;DP=1062033;ExcessHet=0;FS=0;InbreedingCoeff=0.9991;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=28.69;ReadPosRankSum=-0.343;SOR=0.756	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	62942	NC_020431.seq__62942	G	A	146669	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.208;DP=1061755;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.116;QD=28.04;ReadPosRankSum=-1.369;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	62981	NC_020431.seq__62981	A	C	1603500	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-1.115;DP=1064910;ExcessHet=-0;FS=0;InbreedingCoeff=0.9997;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=26.49;ReadPosRankSum=-0.236;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63073	NC_020431.seq__63073	A	C	104867	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.439;DP=1064606;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.76;ReadPosRankSum=0.416;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63319	NC_020431.seq__63319	A	C	883859	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.3;DP=1065949;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.95;ReadPosRankSum=0.103;SOR=0.54	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63408	NC_020431.seq__63408	T	C	1178620	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.659;DP=1068238;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=25.79;ReadPosRankSum=0.285;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63466	NC_020431.seq__63466	G	T	198641	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.107;DP=1068513;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9085;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.31;ReadPosRankSum=0.421;SOR=0.469	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63470	NC_020431.seq__63470	C	A	196974	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.025;DP=1068511;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.033;QD=27.37;ReadPosRankSum=0.724;SOR=0.527	GT:AD:DP:GQ:PL	"0/0:1624,0:1624:99:0,120,1800"
NC_020431.seq	63589	NC_020431.seq__63589	C	T	8619300	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.696;DP=1095664;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=33.78;ReadPosRankSum=0.33;SOR=0.694	GT:AD:DP:GQ:PL	"1/1:47,1717:1764:99:63155,3441,0"
NC_020431.seq	63926	NC_020431.seq__63926	T	C	1184070	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2;DP=1083565;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=24.1;ReadPosRankSum=1.04;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	63953	NC_020431.seq__63953	G	A	1113.99	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.48;DP=1083636;ExcessHet=3.016;FS=2.263;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=0.33;ReadPosRankSum=1.06;SOR=1.255	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	63973	NC_020431.seq__63973	T	G	2313.99	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.19;DP=1083820;ExcessHet=3.016;FS=3.598;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=0.62;ReadPosRankSum=2.65;SOR=1.206	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64116	NC_020431.seq__64116	C	A	208.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.006;DP=1084151;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.15;ReadPosRankSum=-1.406;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64122	NC_020431.seq__64122	T	C	159735	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.285;DP=1084367;ExcessHet=0.0028;FS=1.064;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.02;QD=32.8;ReadPosRankSum=-0.998;SOR=0.496	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64124	NC_020431.seq__64124	T	C	175230	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.77;DP=1085020;ExcessHet=0.0028;FS=1.151;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.029;QD=34.28;ReadPosRankSum=0.203;SOR=0.571	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64128	NC_020431.seq__64128	A	G	753101	.	AC=0;AF=0.014;AN=2;BaseQRankSum=0.348;DP=1087503;ExcessHet=0.0037;FS=0.944;InbreedingCoeff=0.3543;MLEAC=11;MLEAF=0.014;MQ=60;MQRankSum=0;QD=32.77;ReadPosRankSum=0.65;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64185	NC_020431.seq__64185	C	T	871916	.	AC=0;AF=0.012;AN=2;BaseQRankSum=-0.671;DP=1093284;ExcessHet=0;FS=0;InbreedingCoeff=0.8875;MLEAC=9;MLEAF=0.012;MQ=60;MQRankSum=0;QD=34.91;ReadPosRankSum=-0.667;SOR=0.788	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64196	NC_020431.seq__64196	T	C	928273	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.598;DP=1096965;ExcessHet=0;FS=0;InbreedingCoeff=0.7973;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31;ReadPosRankSum=0.621;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64202	NC_020431.seq__64202	T	G	149650	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.348;DP=1097133;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=33.52;ReadPosRankSum=0.719;SOR=0.814	GT:AD:DP:GQ:PL	"0/0:1683,0:1683:99:0,120,1800"
NC_020431.seq	64325	NC_020431.seq__64325	A	C	1193460	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.363;DP=1202767;ExcessHet=0;FS=0;InbreedingCoeff=0.709;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.26;ReadPosRankSum=-0.849;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1928,0:1928:99:0,120,1800"
NC_020431.seq	64343	NC_020431.seq__64343	G	"T,A"	44237.2	.	"AC=0,0;AF=0.003927,0.001309;AN=2;BaseQRankSum=-0.696;DP=1199788;ExcessHet=3.0446;FS=0;InbreedingCoeff=-0.0053;MLEAC=3,1;MLEAF=0.003927,0.001309;MQ=60;MQRankSum=0;QD=7.63;ReadPosRankSum=1.44;SOR=0.665"	GT:AD:DP:GQ:PL	"0/0:1928,0,0:1928:99:0,120,1800,120,1800,1800"
NC_020431.seq	64356	NC_020431.seq__64356	A	C	12085.3	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=1.31;DP=1199361;ExcessHet=3.0675;FS=0;InbreedingCoeff=-0.0061;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=0.96;ReadPosRankSum=1.79;SOR=0.727	GT:AD:DP:GQ:PL	"0/0:1928,0:1928:99:0,120,1800"
NC_020431.seq	64373	NC_020431.seq__64373	A	G	2028260	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.166;DP=1200336;ExcessHet=-0;FS=0;InbreedingCoeff=0.8279;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.6;ReadPosRankSum=0.485;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1928,0:1928:99:0,120,1800"
NC_020431.seq	64390	NC_020431.seq__64390	A	C	270429	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.7;DP=1195827;ExcessHet=3.016;FS=0.995;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.61;ReadPosRankSum=-0.809;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1928,0:1928:99:0,120,1800"
NC_020431.seq	64392	NC_020431.seq__64392	A	C	266431	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.18;DP=1195390;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.08;ReadPosRankSum=0.077;SOR=0.765	GT:AD:DP:GQ:PL	"0/0:1928,0:1928:99:0,120,1800"
NC_020431.seq	64499	NC_020431.seq__64499	A	T	17055.2	.	AC=0;AF=0.026;AN=2;BaseQRankSum=1.8;DP=1142678;ExcessHet=4.1188;FS=0;InbreedingCoeff=-0.0269;MLEAC=20;MLEAF=0.026;MQ=62.01;MQRankSum=0;QD=0.63;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	64578	NC_020431.seq__64578	G	A	287428	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=1.57;DP=1143187;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0.041;QD=33.15;ReadPosRankSum=3.54;SOR=0.608	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	64607	NC_020431.seq__64607	T	G	27175700	.	AC=1;AF=0.452;AN=2;BaseQRankSum=-0.297;DP=1223168;ExcessHet=-0;FS=0;InbreedingCoeff=0.6675;MLEAC=345;MLEAF=0.452;MQ=60;MQRankSum=0;QD=26.93;ReadPosRankSum=-0.434;SOR=0.723	GT:AD:DP:GQ:PL	"0/1:223,1730:1953:99:70457,0,2628"
NC_020431.seq	64609	NC_020431.seq__64609	G	A	88615.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.868;DP=1197909;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.8;ReadPosRankSum=0.976;SOR=0.739	GT:AD:DP:GQ:PL	"0/0:1973,0:1973:99:0,120,1800"
NC_020431.seq	64627	NC_020431.seq__64627	G	A	7923400	.	AC=1;AF=0.11;AN=2;BaseQRankSum=-1.002;DP=1197287;ExcessHet=0;FS=0;InbreedingCoeff=0.4115;MLEAC=84;MLEAF=0.11;MQ=60;MQRankSum=0;QD=33.32;ReadPosRankSum=-0.508;SOR=0.713	GT:AD:DP:GQ:PL	"0/1:272,1678:1950:99:56193,0,5988"
NC_020431.seq	64640	NC_020431.seq__64640	A	C	4841800	.	AC=0;AF=0.12;AN=2;BaseQRankSum=-0.212;DP=1199483;ExcessHet=0;FS=0;InbreedingCoeff=0.3823;MLEAC=92;MLEAF=0.12;MQ=60;MQRankSum=0;QD=32.1;ReadPosRankSum=0.414;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1949,0:1949:99:0,120,1800"
NC_020431.seq	64742	NC_020431.seq__64742	C	T	149587	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.585;DP=1189042;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.11;ReadPosRankSum=-1.173;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1949,0:1949:99:0,120,1800"
NC_020431.seq	64763	NC_020431.seq__64763	C	"T,*"	981703	.	"AC=0,0;AF=0.01,0.002618;AN=2;BaseQRankSum=1.09;DP=1189437;ExcessHet=0;FS=0;InbreedingCoeff=0.7973;MLEAC=8,2;MLEAF=0.01,0.002618;MQ=53.73;MQRankSum=0;QD=34.17;ReadPosRankSum=0.501;SOR=0.647"	GT:AD:DP:GQ:PL	"0/0:1949,0,0:1949:99:0,120,1800,120,1800,1800"
NC_020431.seq	64790	NC_020431.seq__64790	G	T	29797100	.	AC=2;AF=0.582;AN=2;BaseQRankSum=0.582;DP=1227849;ExcessHet=-0;FS=0;InbreedingCoeff=0.8191;MLEAC=447;MLEAF=0.585;MQ=60.02;MQRankSum=0;QD=34.55;ReadPosRankSum=0.098;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:12,1971:1983:99:73193,5525,0"
NC_020431.seq	64831	NC_020431.seq__64831	A	C	280061	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.79;DP=1188064;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=34.52;ReadPosRankSum=0.599;SOR=0.598	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	64859	NC_020431.seq__64859	T	C	2728910	.	AC=0;AF=0.058;AN=2;BaseQRankSum=1.5;DP=1184321;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=32.3;ReadPosRankSum=0.676;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	64899	NC_020431.seq__64899	C	T	1175630	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.423;DP=1184155;ExcessHet=0;FS=0;InbreedingCoeff=0.7089;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=34.29;ReadPosRankSum=0.968;SOR=0.752	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	64949	NC_020431.seq__64949	G	A	325462	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.277;DP=1182981;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.36;QD=33.58;ReadPosRankSum=1.14;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65110	NC_020431.seq__65110	T	G	940641	.	AC=0;AF=0.017;AN=2;BaseQRankSum=-0.127;DP=1183081;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=13;MLEAF=0.017;MQ=60;MQRankSum=0;QD=33.58;ReadPosRankSum=0.022;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65222	NC_020431.seq__65222	T	G	1718660	.	AC=0;AF=0.026;AN=2;BaseQRankSum=0.033;DP=1192621;ExcessHet=0;FS=0;InbreedingCoeff=0.7946;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=33.45;ReadPosRankSum=0.402;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65256	NC_020431.seq__65256	G	A	95333	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.22;DP=1190631;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.02;ReadPosRankSum=0.451;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65258	NC_020431.seq__65258	A	C	13203	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.23;DP=1191388;ExcessHet=3.4575;FS=0;InbreedingCoeff=-0.0153;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=0.81;ReadPosRankSum=-0.033;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65265	NC_020431.seq__65265	G	A	558932	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=3.01;DP=1191247;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=36.48;ReadPosRankSum=-0.391;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65280	NC_020431.seq__65280	C	T	577974	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=2.48;DP=1191457;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=30.38;ReadPosRankSum=-0.3;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1842,0:1842:99:0,120,1800"
NC_020431.seq	65313	NC_020431.seq__65313	C	G	44252300	.	AC=2;AF=0.916;AN=2;BaseQRankSum=-0.194;DP=1238192;ExcessHet=-0;FS=0;InbreedingCoeff=0.6479;MLEAC=701;MLEAF=0.918;MQ=60;MQRankSum=0;QD=26.29;ReadPosRankSum=0.097;SOR=0.695	GT:AD:DP:GQ:PL	"1/1:0,1912:1914:99:73110,5759,0"
NC_020431.seq	65413	NC_020431.seq__65413	G	C	7073.86	.	AC=0;AF=0.009162;AN=2;BaseQRankSum=0.455;DP=1141924;ExcessHet=3.2673;FS=0;InbreedingCoeff=-0.0113;MLEAC=7;MLEAF=0.009162;MQ=60;MQRankSum=0;QD=0.7;ReadPosRankSum=0.655;SOR=0.802	GT:AD:DP:GQ:PL	"0/0:1789,0:1789:99:0,120,1800"
NC_020431.seq	65503	NC_020431.seq__65503	C	T	1122.13	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.43;DP=1140328;ExcessHet=3.0444;FS=0;InbreedingCoeff=-0.0039;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=0.21;ReadPosRankSum=1.32;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1789,0:1789:99:0,120,1800"
NC_020431.seq	65517	NC_020431.seq__65517	T	G	341449	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=0.417;DP=1140870;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=33.65;ReadPosRankSum=1.26;SOR=0.715	GT:AD:DP:GQ:PL	"0/0:1789,0:1789:99:0,120,1800"
NC_020431.seq	65519	NC_020431.seq__65519	A	C	498.02	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.6;DP=1139837;ExcessHet=3.0274;FS=1.103;InbreedingCoeff=-0.0033;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=0.09;ReadPosRankSum=0.101;SOR=0.941	GT:AD:DP:GQ:PL	"0/0:1789,0:1789:99:0,120,1800"
NC_020431.seq	65532	NC_020431.seq__65532	T	C	344914	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.836;DP=1139908;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.027;QD=33.71;ReadPosRankSum=0.517;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1789,0:1789:99:0,120,1800"
NC_020431.seq	65546	NC_020431.seq__65546	T	C	4492.69	.	AC=0;AF=0.017;AN=2;BaseQRankSum=1.14;DP=1142121;ExcessHet=15.9988;FS=5.557;InbreedingCoeff=-0.058;MLEAC=13;MLEAF=0.017;MQ=73.51;MQRankSum=0;QD=0.24;ReadPosRankSum=-1.659;SOR=1.633	GT:AD:DP:GQ:PL	"0/0:1879,0:1879:0:0,0,58830"
NC_020431.seq	65698	NC_020431.seq__65698	G	T	163697	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.99;DP=1124068;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.56;ReadPosRankSum=-0.894;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65735	NC_020431.seq__65735	G	A	303333	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.992;DP=1123799;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.66;ReadPosRankSum=0.187;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65754	NC_020431.seq__65754	T	G	725709	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.466;DP=1123876;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=0.476;SOR=0.65	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65766	NC_020431.seq__65766	A	"*,G"	4745880	.	"AC=0,0;AF=0.102,0.002618;AN=2;BaseQRankSum=0.171;DP=1125296;ExcessHet=-0;FS=0;InbreedingCoeff=0.9162;MLEAC=78,2;MLEAF=0.102,0.002618;MQ=10.14;MQRankSum=-0.002;QD=34.25;ReadPosRankSum=2.36;SOR=0.678"	GT:AD:DP:GQ:PL	"0/0:1701,0,0:1701:99:0,120,1800,120,1800,1800"
NC_020431.seq	65767	NC_020431.seq__65767	C	"*,G"	4745880	.	"AC=0,0;AF=0.102,0.002618;AN=2;BaseQRankSum=0.082;DP=1125280;ExcessHet=-0;FS=0;InbreedingCoeff=0.9162;MLEAC=78,2;MLEAF=0.102,0.002618;MQ=10.13;MQRankSum=0;QD=34.25;ReadPosRankSum=2.31;SOR=0.678"	GT:AD:DP:GQ:PL	"0/0:1701,0,0:1701:99:0,120,1800,120,1800,1800"
NC_020431.seq	65768	NC_020431.seq__65768	A	"*,T"	4745930	.	"AC=0,0;AF=0.102,0.002618;AN=2;BaseQRankSum=0.053;DP=1125285;ExcessHet=-0;FS=0;InbreedingCoeff=0.9162;MLEAC=78,2;MLEAF=0.102,0.002618;MQ=10.13;MQRankSum=0;QD=34.26;ReadPosRankSum=2.5;SOR=0.677"	GT:AD:DP:GQ:PL	"0/0:1701,0,0:1701:99:0,120,1800,120,1800,1800"
NC_020431.seq	65807	NC_020431.seq__65807	A	C	205121	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.293;DP=1112816;ExcessHet=0.017;FS=0;InbreedingCoeff=0.6653;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.54;ReadPosRankSum=0.418;SOR=0.347	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65839	NC_020431.seq__65839	C	T	178014	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.44;DP=1111637;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.41;ReadPosRankSum=-1.413;SOR=0.53	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65856	NC_020431.seq__65856	C	T	1058330	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.523;DP=1112017;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=32.83;ReadPosRankSum=0.101;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	65878	NC_020431.seq__65878	T	C	107413	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.896;DP=1111446;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=20.82;ReadPosRankSum=1.71;SOR=0.231	GT:AD:DP:GQ:PL	"0/0:1701,0:1701:99:0,120,1800"
NC_020431.seq	66021	NC_020431.seq__66021	T	C	7548020	.	AC=2;AF=0.147;AN=2;BaseQRankSum=-0.084;DP=1118004;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=112;MLEAF=0.147;MQ=60;MQRankSum=0;QD=32.46;ReadPosRankSum=-0.024;SOR=0.681	GT:AD:DP:GQ:PL	"1/1:54,1690:1744:99:60673,3212,0"
NC_020431.seq	66135	NC_020431.seq__66135	T	G	207664	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.84;DP=1109795;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=0.72;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66158	NC_020431.seq__66158	C	T	90502	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.83;DP=1110095;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.18;ReadPosRankSum=1.09;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66196	NC_020431.seq__66196	T	C	653874	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.078;DP=1110575;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.92;ReadPosRankSum=-0.193;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66254	NC_020431.seq__66254	G	A	134801	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.669;DP=1109306;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.6;ReadPosRankSum=0.647;SOR=0.636	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66310	NC_020431.seq__66310	A	C	1122130	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.409;DP=1110951;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=29.03;ReadPosRankSum=-0.016;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66388	NC_020431.seq__66388	A	T	105083	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.24;DP=1108822;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.72;ReadPosRankSum=-0.416;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66522	NC_020431.seq__66522	C	T	90362	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.956;DP=1108766;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.48;ReadPosRankSum=-0.42;SOR=0.561	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66643	NC_020431.seq__66643	A	G	165883	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.068;DP=1108886;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.72;ReadPosRankSum=-0.157;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1654,0:1654:99:0,120,1800"
NC_020431.seq	66662	NC_020431.seq__66662	C	A	28472200	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.926;DP=1161491;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=30.92;ReadPosRankSum=0.034;SOR=0.717	GT:AD:DP:GQ:PL	"1/1:7,1791:1798:99:69115,5123,0"
NC_020431.seq	66663	NC_020431.seq__66663	G	A	105326	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.37;DP=1128701;ExcessHet=0.0028;FS=2.107;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.08;ReadPosRankSum=0.498;SOR=0.487	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66690	NC_020431.seq__66690	A	G	152625	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.561;DP=1128890;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.87;ReadPosRankSum=0.24;SOR=0.95	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66766	NC_020431.seq__66766	A	C	153553	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.87;DP=1128579;ExcessHet=0.0028;FS=1.658;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.49;QD=26.99;ReadPosRankSum=2.2;SOR=0.367	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66784	NC_020431.seq__66784	T	G	228406	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.09;DP=1128202;ExcessHet=0;FS=1.706;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=2.84;SOR=0.573	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66812	NC_020431.seq__66812	T	C	282375	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.72;DP=1128048;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.043;QD=29.98;ReadPosRankSum=-0.155;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66882	NC_020431.seq__66882	C	T	343011	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.112;DP=1128043;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.079;QD=33.23;ReadPosRankSum=-0.104;SOR=0.578	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	66950	NC_020431.seq__66950	C	G	214960	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.599;DP=1127679;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.77;ReadPosRankSum=-1.367;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	67162	NC_020431.seq__67162	T	G	1076790	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.45;DP=1126729;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=59.99;MQRankSum=0.081;QD=28.94;ReadPosRankSum=0.411;SOR=0.555	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	67247	NC_020431.seq__67247	G	A	35673	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.248;DP=1125939;ExcessHet=0.0028;FS=1.474;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.59;ReadPosRankSum=0.127;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	67271	NC_020431.seq__67271	C	T	405454	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.689;DP=1125361;ExcessHet=0;FS=3.189;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.95;ReadPosRankSum=2.03;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1776,0:1776:99:0,120,1800"
NC_020431.seq	67301	NC_020431.seq__67301	C	A	895871	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.77;DP=1113797;ExcessHet=0;FS=0;InbreedingCoeff=0.8307;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=32.53;ReadPosRankSum=0.468;SOR=0.433	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67333	NC_020431.seq__67333	G	A	160991	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.811;DP=1107011;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.021;QD=34.81;ReadPosRankSum=0.376;SOR=0.449	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67334	NC_020431.seq__67334	T	C	156689	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.112;DP=1106806;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.58;ReadPosRankSum=0.417;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67369	NC_020431.seq__67369	A	C	1186400	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.569;DP=1106401;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=28.14;ReadPosRankSum=0.262;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67480	NC_020431.seq__67480	T	G	532996	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.034;DP=1106177;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.37;ReadPosRankSum=-0.066;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67486	NC_020431.seq__67486	G	A	4929120	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.213;DP=1110735;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=29.88;ReadPosRankSum=0.016;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67578	NC_020431.seq__67578	C	T	108837	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.78;DP=1107041;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.54;ReadPosRankSum=0.234;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67587	NC_020431.seq__67587	A	C	94389.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.309;DP=1107023;ExcessHet=0;FS=3.587;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.09;ReadPosRankSum=1.88;SOR=0.48	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67750	NC_020431.seq__67750	A	C	895066	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.236;DP=1107910;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31.62;ReadPosRankSum=-0.035;SOR=0.57	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67757	NC_020431.seq__67757	A	C	287230	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.88;DP=1108299;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=0.896;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67787	NC_020431.seq__67787	T	G	886442	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.55;DP=1107813;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.55;ReadPosRankSum=1.16;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67818	NC_020431.seq__67818	A	T	597700	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.662;DP=1107567;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=29.62;ReadPosRankSum=1.24;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67965	NC_020431.seq__67965	G	A	414679	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.63;DP=1106643;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.7;ReadPosRankSum=0.887;SOR=0.484	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67981	NC_020431.seq__67981	A	C	2556400	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.454;DP=1107859;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=32.76;ReadPosRankSum=0.731;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	67993	NC_020431.seq__67993	G	C	158926	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.802;DP=1107767;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.015;QD=23.68;ReadPosRankSum=0.238;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68074	NC_020431.seq__68074	T	G	86544	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.98;DP=1109496;ExcessHet=0.0028;FS=2.37;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.11;ReadPosRankSum=2.27;SOR=0.407	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68175	NC_020431.seq__68175	T	G	195175	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.368;DP=1109762;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.18;ReadPosRankSum=-0.31;SOR=0.636	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68242	NC_020431.seq__68242	C	T	901527	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.387;DP=1110012;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=25.35;ReadPosRankSum=-0.72;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68276	NC_020431.seq__68276	A	C	103624	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.09;DP=1110101;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.96;ReadPosRankSum=-1.151;SOR=0.503	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68336	NC_020431.seq__68336	T	C	291406	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.5;DP=1110312;ExcessHet=0;FS=0;InbreedingCoeff=0.9519;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.2;ReadPosRankSum=1.4;SOR=0.81	GT:AD:DP:GQ:PL	"0/0:1670,0:1670:99:0,120,1800"
NC_020431.seq	68374	NC_020431.seq__68374	T	C	72613	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.09;DP=1113524;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.47;ReadPosRankSum=0.495;SOR=0.5	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	68446	NC_020431.seq__68446	C	G	185727	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.387;DP=1113250;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.051;QD=26.57;ReadPosRankSum=-0.125;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	68651	NC_020431.seq__68651	A	G	32679700	.	AC=2;AF=0.581;AN=2;BaseQRankSum=-0.136;DP=1132355;ExcessHet=-0;FS=0;InbreedingCoeff=0.9996;MLEAC=444;MLEAF=0.581;MQ=60;MQRankSum=0;QD=33.64;ReadPosRankSum=0.112;SOR=0.733	GT:AD:DP:GQ:PL	"1/1:5,1771:1776:99:77908,5097,0"
NC_020431.seq	68669	NC_020431.seq__68669	T	C	28341400	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.28;DP=1132244;ExcessHet=-0;FS=0;InbreedingCoeff=0.9991;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=34.98;ReadPosRankSum=-0.097;SOR=0.778	GT:AD:DP:GQ:PL	"1/1:5,1746:1761:99:77458,5078,0"
NC_020431.seq	68792	NC_020431.seq__68792	C	A	27723600	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.816;DP=1155610;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=31.23;ReadPosRankSum=0.236;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:4,1702:1706:99:64476,4991,0"
NC_020431.seq	68891	NC_020431.seq__68891	T	C	263636	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.031;DP=1111091;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.017;QD=31.81;ReadPosRankSum=1.57;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	68953	NC_020431.seq__68953	G	A	163734	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.213;DP=1110641;ExcessHet=0.0028;FS=1.525;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.1;ReadPosRankSum=-0.608;SOR=0.775	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	69090	NC_020431.seq__69090	G	A	164114	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.803;DP=1110288;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=6.68;QD=27.89;ReadPosRankSum=0.569;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	69226	NC_020431.seq__69226	C	T	840990	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.307;DP=1109863;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.012;QD=27.53;ReadPosRankSum=-0.171;SOR=0.727	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	69242	NC_020431.seq__69242	A	C	311170	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.43;DP=1110175;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.007;QD=31.34;ReadPosRankSum=1.29;SOR=0.696	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	69250	NC_020431.seq__69250	A	C	187711	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.425;DP=1110365;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.06;ReadPosRankSum=-0.923;SOR=0.49	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	69305	NC_020431.seq__69305	G	C	39202800	.	AC=2;AF=1;AN=2;BaseQRankSum=1.86;DP=1071111;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=0;QD=33.25;ReadPosRankSum=1.57;SOR=0.247	GT:AD:DP:GQ:PL	"1/1:2,1472:1482:99:51780,4383,0"
NC_020431.seq	69314	NC_020431.seq__69314	G	T	26944800	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.127;DP=1069641;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26.78;ReadPosRankSum=-0.325;SOR=0.796	GT:AD:DP:GQ:PL	"1/1:5,1520:1525:99:66995,4492,0"
NC_020431.seq	69370	NC_020431.seq__69370	G	A	292853	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.61;DP=1080943;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.66;ReadPosRankSum=1.8;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	69418	NC_020431.seq__69418	G	T	4784860	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.64;DP=1081918;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=0.122;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	69572	NC_020431.seq__69572	C	A	828300	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.522;DP=1083661;ExcessHet=0;FS=0;InbreedingCoeff=0.994;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=25.56;ReadPosRankSum=0.923;SOR=0.551	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	69584	NC_020431.seq__69584	T	A	836783	.	AC=0;AF=0.019;AN=2;BaseQRankSum=3.22;DP=1091375;ExcessHet=0;FS=0;InbreedingCoeff=0.9977;MLEAC=14;MLEAF=0.019;MQ=43.46;MQRankSum=0;QD=32.61;ReadPosRankSum=3.57;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1801,0:1801:81:0,81,1215"
NC_020431.seq	69588	NC_020431.seq__69588	A	"*,G"	2464550	.	"AC=0,0;AF=0.1,0.069;AN=2;BaseQRankSum=-1.059;DP=1117599;ExcessHet=-0;FS=4.392;InbreedingCoeff=0.4964;MLEAC=71,48;MLEAF=0.1,0.068;MQ=20.78;MQRankSum=0;QD=28.48;ReadPosRankSum=1.53;SOR=0.175"	GT:AD:DP:GQ:PL	"0/0:29,2,0:1408:99:0,4024,27995,4200,27499,27595"
NC_020431.seq	69589	NC_020431.seq__69589	A	"*,G"	982989	.	"AC=0,0;AF=0.046,0.026;AN=2;BaseQRankSum=0.611;DP=1132993;ExcessHet=0;FS=4.364;InbreedingCoeff=0.3142;MLEAC=35,19;MLEAF=0.046,0.025;MQ=23.65;MQRankSum=0;QD=27.29;ReadPosRankSum=3.13;SOR=0.176"	GT:AD:DP:GQ:PL	"0/0:29,2,0:1408:99:0,4024,27995,4200,27499,27595"
NC_020431.seq	69656	NC_020431.seq__69656	T	G	146299	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.58;DP=1067890;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.38;ReadPosRankSum=-0.632;SOR=0.475	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	69836	NC_020431.seq__69836	T	C	436668	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.25;DP=1068142;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.21;ReadPosRankSum=0.798;SOR=0.608	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	69861	NC_020431.seq__69861	A	G	26814300	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.176;DP=1099988;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26;ReadPosRankSum=-0.043;SOR=0.679	GT:AD:DP:GQ:PL	"1/1:8,1624:1632:99:61533,4634,0"
NC_020431.seq	70002	NC_020431.seq__70002	G	A	3229610	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.27;DP=1094282;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=30.63;ReadPosRankSum=0.218;SOR=0.612	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70017	NC_020431.seq__70017	G	A	104387	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.454;DP=1093617;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=23.57;ReadPosRankSum=1.29;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70048	NC_020431.seq__70048	G	A	63249	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.124;DP=1093702;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.17;ReadPosRankSum=-0.366;SOR=0.603	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70115	NC_020431.seq__70115	T	G	260230	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.87;DP=1095626;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.92;ReadPosRankSum=2.28;SOR=0.802	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70142	NC_020431.seq__70142	C	A	318980	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.54;DP=1096002;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.99;ReadPosRankSum=0.606;SOR=0.808	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70184	NC_020431.seq__70184	C	T	151119	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.946;DP=1095568;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=26.45;ReadPosRankSum=-0.323;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70195	NC_020431.seq__70195	T	G	204049	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.97;DP=1095705;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.75;ReadPosRankSum=-0.263;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70202	NC_020431.seq__70202	A	G	722173	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.559;DP=1097426;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31.96;ReadPosRankSum=0.619;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70206	NC_020431.seq__70206	G	A	304435	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.527;DP=1097976;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=24.62;ReadPosRankSum=-0.074;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70250	NC_020431.seq__70250	A	G	1145200	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.397;DP=1098522;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=30.32;ReadPosRankSum=0.321;SOR=0.737	GT:AD:DP:GQ:PL	"0/0:1615,0:1615:99:0,120,1800"
NC_020431.seq	70271	NC_020431.seq__70271	T	C	27497200	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.219;DP=1120461;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=29.88;ReadPosRankSum=0.035;SOR=0.739	GT:AD:DP:GQ:PL	"1/1:8,1746:1754:99:65603,4951,0"
NC_020431.seq	70327	NC_020431.seq__70327	T	G	251815	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.623;DP=1100275;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.49;ReadPosRankSum=0.819;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	70354	NC_020431.seq__70354	T	G	1180130	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.13;DP=1099895;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=32.46;ReadPosRankSum=0.593;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	70363	NC_020431.seq__70363	C	T	204146	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.486;DP=1099850;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.95;ReadPosRankSum=-0.624;SOR=0.764	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	70376	NC_020431.seq__70376	T	C	406156	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.776;DP=1099729;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.43;ReadPosRankSum=0.319;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1680,0:1680:99:0,120,1800"
NC_020431.seq	70377	NC_020431.seq__70377	T	C	26815800	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.197;DP=1097123;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.72;ReadPosRankSum=0.289;SOR=0.678	GT:AD:DP:GQ:PL	"1/1:5,1655:1661:99:63111,4781,0"
NC_020431.seq	70409	NC_020431.seq__70409	T	"G,*"	500708	.	"AC=0,0;AF=0.005236,0.002618;AN=2;BaseQRankSum=2.13;DP=1099038;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4,2;MLEAF=0.005236,0.002618;MQ=47.53;MQRankSum=10.05;QD=30.24;ReadPosRankSum=4.14;SOR=0.807"	GT:AD:DP:GQ:PL	"0/0:1678,0,0:1678:99:0,120,1800,120,1800,1800"
NC_020431.seq	70446	NC_020431.seq__70446	A	C	300138	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.03;DP=1098961;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.584;QD=37.29;ReadPosRankSum=1.94;SOR=0.44	GT:AD:DP:GQ:PL	"0/0:1678,0:1678:99:0,120,1800"
NC_020431.seq	70537	NC_020431.seq__70537	T	G	5061860	.	AC=0;AF=0.099;AN=2;BaseQRankSum=1.73;DP=1104377;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=26.89;ReadPosRankSum=0.294;SOR=0.585	GT:AD:DP:GQ:PL	"0/0:1678,0:1678:99:0,120,1800"
NC_020431.seq	70556	NC_020431.seq__70556	C	A	26995000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=1.2;DP=1118369;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26.14;ReadPosRankSum=0.321;SOR=0.537	GT:AD:DP:GQ:PL	"1/1:10,1756:1766:99:63839,4945,0"
NC_020431.seq	70608	NC_020431.seq__70608	A	C	309394	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.109;DP=1091761;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.5;ReadPosRankSum=1.6;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	70641	NC_020431.seq__70641	C	T	2572600	.	AC=0;AF=0.058;AN=2;BaseQRankSum=-0.758;DP=1092626;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=-0.086;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	70653	NC_020431.seq__70653	T	C	27558100	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.084;DP=1111756;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=30.93;ReadPosRankSum=-0.04;SOR=0.641	GT:AD:DP:GQ:PL	"1/1:16,1768:1784:99:65668,4742,0"
NC_020431.seq	70682	NC_020431.seq__70682	T	C	172082	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.132;DP=1102744;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.68;ReadPosRankSum=-1.511;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1750,0:1750:99:0,120,1800"
NC_020431.seq	70721	NC_020431.seq__70721	C	T	860908	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-1.377;DP=1102982;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31.99;ReadPosRankSum=0.273;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1750,0:1750:99:0,120,1800"
NC_020431.seq	70877	NC_020431.seq__70877	A	C	1993340	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.561;DP=1135354;ExcessHet=-0;FS=0;InbreedingCoeff=0.8279;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0.032;QD=33.84;ReadPosRankSum=-1.526;SOR=0.59	GT:AD:DP:GQ:PL	"0/0:1869,0:1869:99:0,120,1800"
NC_020431.seq	70901	NC_020431.seq__70901	A	C	183065	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.79;DP=1109379;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.175;QD=34.29;ReadPosRankSum=3.47;SOR=0.703	GT:AD:DP:GQ:PL	"0/0:1853,0:1853:99:0,120,1800"
NC_020431.seq	70927	NC_020431.seq__70927	C	A	26950100	.	AC=2;AF=0.533;AN=2;BaseQRankSum=0.427;DP=1147926;ExcessHet=-0;FS=0;InbreedingCoeff=0.8971;MLEAC=412;MLEAF=0.539;MQ=60.01;MQRankSum=0;QD=25.59;ReadPosRankSum=-0.133;SOR=0.677	GT:AD:DP:GQ:PL	"1/1:15,1952:1967:99:72454,5294,0"
NC_020431.seq	70959	NC_020431.seq__70959	T	G	74886.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.978;DP=1125010;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=30.91;ReadPosRankSum=-0.779;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1953,0:1953:99:0,120,1800"
NC_020431.seq	70983	NC_020431.seq__70983	A	C	565463	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.65;DP=1125015;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=31.51;ReadPosRankSum=0.211;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1953,0:1953:99:0,120,1800"
NC_020431.seq	70990	NC_020431.seq__70990	G	A	43161.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.64;DP=1125312;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=30.04;ReadPosRankSum=2.27;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1953,0:1953:99:0,120,1800"
NC_020431.seq	71069	NC_020431.seq__71069	C	A	1301940	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.42;DP=1126806;ExcessHet=0;FS=0;InbreedingCoeff=0.8545;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=34.35;ReadPosRankSum=0.118;SOR=0.75	GT:AD:DP:GQ:PL	"0/0:1953,0:1953:99:0,120,1800"
NC_020431.seq	71097	NC_020431.seq__71097	C	T	90969.4	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.763;DP=1055018;ExcessHet=0.0008;FS=1.143;InbreedingCoeff=0.664;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=4.03;QD=33.44;ReadPosRankSum=3.26;SOR=0.421	GT:AD:DP:GQ:PL	"0/0:1809,0:1809:99:0,120,1800"
NC_020431.seq	71123	NC_020431.seq__71123	A	C	806830	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.3;DP=1054254;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.96;ReadPosRankSum=-0.399;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1809,0:1809:99:0,120,1800"
NC_020431.seq	71177	NC_020431.seq__71177	G	A	993223	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-1.854;DP=1053624;ExcessHet=0;FS=0;InbreedingCoeff=0.7089;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=33.17;ReadPosRankSum=-0.255;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1809,0:1809:99:0,120,1800"
NC_020431.seq	71199	NC_020431.seq__71199	G	A	24607400	.	AC=2;AF=0.551;AN=2;BaseQRankSum=-0.446;DP=1053951;ExcessHet=-0;FS=0;InbreedingCoeff=0.9285;MLEAC=423;MLEAF=0.554;MQ=60;MQRankSum=0;QD=31.43;ReadPosRankSum=0.005;SOR=0.704	GT:AD:DP:GQ:PL	"1/1:5,1788:1793:99:66831,5163,0"
NC_020431.seq	71267	NC_020431.seq__71267	G	A	5735120	.	AC=1;AF=0.092;AN=2;BaseQRankSum=-1.803;DP=1072539;ExcessHet=-0;FS=0;InbreedingCoeff=0.6225;MLEAC=70;MLEAF=0.092;MQ=60;MQRankSum=0;QD=32.12;ReadPosRankSum=0.319;SOR=0.719	GT:AD:DP:GQ:PL	"0/1:225,1664:1889:99:55825,0,2758"
NC_020431.seq	71276	NC_020431.seq__71276	C	T	858476	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.936;DP=1066934;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=34.04;ReadPosRankSum=0.535;SOR=0.622	GT:AD:DP:GQ:PL	"0/0:1811,0:1811:99:0,120,1800"
NC_020431.seq	71357	NC_020431.seq__71357	T	G	100746	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.129;DP=1065711;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.12;ReadPosRankSum=0.441;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1811,0:1811:99:0,120,1800"
NC_020431.seq	71455	NC_020431.seq__71455	C	T	155266	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.983;DP=1066402;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.73;ReadPosRankSum=-0.92;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1811,0:1811:99:0,120,1800"
NC_020431.seq	71492	NC_020431.seq__71492	T	C	27286300	.	AC=2;AF=0.551;AN=2;BaseQRankSum=0.31;DP=1120640;ExcessHet=-0;FS=0;InbreedingCoeff=0.9231;MLEAC=424;MLEAF=0.555;MQ=60.16;MQRankSum=0;QD=26.58;ReadPosRankSum=0.015;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:5,1822:1828:99:69604,5296,0"
NC_020431.seq	71606	NC_020431.seq__71606	C	T	107022	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.087;DP=1041301;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.09;ReadPosRankSum=0.832;SOR=0.581	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71654	NC_020431.seq__71654	G	A	108403	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.127;DP=1041219;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.9;ReadPosRankSum=0.566;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71720	NC_020431.seq__71720	C	T	45554.8	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.193;DP=1040986;ExcessHet=3.0103;FS=0.782;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=30.78;ReadPosRankSum=-1.045;SOR=0.602	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71722	NC_020431.seq__71722	A	G	1038.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.35;DP=1040999;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.75;ReadPosRankSum=0.901;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71759	NC_020431.seq__71759	T	C	288374	.	AC=0;AF=0.02;AN=2;BaseQRankSum=0.334;DP=1042321;ExcessHet=0.015;FS=0;InbreedingCoeff=0.252;MLEAC=15;MLEAF=0.02;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.128;SOR=0.708	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71765	NC_020431.seq__71765	G	C	157348	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.59;DP=1040755;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.19;ReadPosRankSum=0.208;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	71921	NC_020431.seq__71921	T	C	84179	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.19;DP=1040165;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.92;ReadPosRankSum=-1.717;SOR=0.608	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	72140	NC_020431.seq__72140	A	C	10354.4	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=2.15;DP=1040211;ExcessHet=3.0675;FS=0;InbreedingCoeff=-0.0066;MLEAC=5;MLEAF=0.006545;MQ=66.58;MQRankSum=0;QD=0.97;ReadPosRankSum=0.707;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	72197	NC_020431.seq__72197	C	T	558292	.	AC=0;AF=0.009162;AN=2;BaseQRankSum=-0.972;DP=1041892;ExcessHet=0;FS=0;InbreedingCoeff=0.8558;MLEAC=7;MLEAF=0.009162;MQ=60;MQRankSum=0;QD=31.72;ReadPosRankSum=-0.235;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	72317	NC_020431.seq__72317	C	T	202906	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.718;DP=1037958;ExcessHet=3.016;FS=0;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.86;ReadPosRankSum=-0.705;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1642,0:1642:99:0,120,1800"
NC_020431.seq	72497	NC_020431.seq__72497	A	C	122752	.	AC=1;AF=0.116;AN=2;BaseQRankSum=0.396;DP=1041901;ExcessHet=28.2597;FS=0.991;InbreedingCoeff=-0.1322;MLEAC=89;MLEAF=0.116;MQ=60.98;MQRankSum=-6.537;QD=0.79;ReadPosRankSum=0.965;SOR=0.885	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1593,148:1741:99:0|1:72497_A_C:1344,0,68079"
NC_020431.seq	72502	NC_020431.seq__72502	T	G	113890	.	AC=1;AF=0.118;AN=2;BaseQRankSum=-0.244;DP=1042010;ExcessHet=28.8737;FS=0;InbreedingCoeff=-0.1341;MLEAC=90;MLEAF=0.118;MQ=60.98;MQRankSum=-6.539;QD=0.72;ReadPosRankSum=0.843;SOR=0.87	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1606,143:1749:99:0|1:72497_A_C:1188,0,67923"
NC_020431.seq	72503	NC_020431.seq__72503	T	C	112108	.	AC=1;AF=0.115;AN=2;BaseQRankSum=-1.515;DP=1042366;ExcessHet=28.1847;FS=0.991;InbreedingCoeff=-0.1316;MLEAC=88;MLEAF=0.115;MQ=60.32;MQRankSum=-6.404;QD=0.74;ReadPosRankSum=0.93;SOR=0.869	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1603,142:1745:99:0|1:72497_A_C:1116,0,68346"
NC_020431.seq	72515	NC_020431.seq__72515	C	T	89101	.	AC=0;AF=0.101;AN=2;BaseQRankSum=-0.057;DP=1043214;ExcessHet=31.6801;FS=0;InbreedingCoeff=-0.1284;MLEAC=78;MLEAF=0.102;MQ=60.96;MQRankSum=-7.23;QD=0.64;ReadPosRankSum=0.113;SOR=0.858	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:0:0,0,54319"
NC_020431.seq	72518	NC_020431.seq__72518	A	T	88226.7	.	AC=1;AF=0.106;AN=2;BaseQRankSum=-0.149;DP=1044327;ExcessHet=33.715;FS=0;InbreedingCoeff=-0.1347;MLEAC=82;MLEAF=0.107;MQ=60.62;MQRankSum=-7.454;QD=0.6;ReadPosRankSum=0.105;SOR=0.842	GT:AD:DP:GQ:PGT:PID:PL	"0/1:1617,121:1738:93:0|1:72497_A_C:93,0,69213"
NC_020431.seq	72537	NC_020431.seq__72537	G	T	41687.3	.	AC=0;AF=0.062;AN=2;BaseQRankSum=-0.016;DP=1042886;ExcessHet=25.4536;FS=1.06;InbreedingCoeff=-0.0985;MLEAC=47;MLEAF=0.062;MQ=61.7;MQRankSum=-8.06;QD=0.49;ReadPosRankSum=-0.471;SOR=0.866	GT:AD:DP:GQ:PL	"0/0:1784,0:1784:0:0,0,54655"
NC_020431.seq	72553	NC_020431.seq__72553	C	T	18453.1	.	AC=0;AF=0.03;AN=2;BaseQRankSum=0.127;DP=1042852;ExcessHet=20.2257;FS=1.063;InbreedingCoeff=-0.0733;MLEAC=23;MLEAF=0.03;MQ=64.56;MQRankSum=-8.83;QD=0.42;ReadPosRankSum=-1.356;SOR=0.878	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:0:0,0,55687"
NC_020431.seq	72575	NC_020431.seq__72575	G	A	6903.88	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.034;DP=1039596;ExcessHet=17.3611;FS=1.063;InbreedingCoeff=-0.0582;MLEAC=10;MLEAF=0.013;MQ=66.29;MQRankSum=-9.977;QD=0.41;ReadPosRankSum=-0.944;SOR=0.866	GT:AD:DP:GQ:PL	"0/0:1739,0:1739:58:0,58,56052"
NC_020431.seq	72579	NC_020431.seq__72579	G	A	5259.71	.	AC=0;AF=0.009162;AN=2;BaseQRankSum=-0.524;DP=1038999;ExcessHet=10.4637;FS=0;InbreedingCoeff=-0.0407;MLEAC=6;MLEAF=0.007853;MQ=59.96;MQRankSum=-10.53;QD=0.49;ReadPosRankSum=-1.221;SOR=0.801	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	72584	NC_020431.seq__72584	G	A	5920	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.042;DP=1038819;ExcessHet=16.4906;FS=0;InbreedingCoeff=-0.0544;MLEAC=6;MLEAF=0.007853;MQ=62.4;MQRankSum=-10.7;QD=0.58;ReadPosRankSum=-0.957;SOR=0.852	GT:AD:DP:GQ:PL	"0/0:1764,0:1764:0:0,0,55113"
NC_020431.seq	72602	NC_020431.seq__72602	C	A	4073.98	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.445;DP=1035317;ExcessHet=11.2078;FS=0;InbreedingCoeff=-0.0398;MLEAC=2;MLEAF=0.002618;MQ=59.87;MQRankSum=-4.706;QD=1.7;ReadPosRankSum=-6.35;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1721,0:1721:99:0,120,1800"
NC_020431.seq	72628	NC_020431.seq__72628	G	T	1975.28	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.83;DP=1034941;ExcessHet=12.67;FS=0;InbreedingCoeff=-0.0425;MLEAC=1;MLEAF=0.001309;MQ=59.8;MQRankSum=-18.18;QD=1.3;ReadPosRankSum=1.59;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1740,0:1740:0:0,0,54393"
NC_020431.seq	72631	NC_020431.seq__72631	C	T	1853.28	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.91;DP=1033812;ExcessHet=12.67;FS=0;InbreedingCoeff=-0.0426;MLEAC=1;MLEAF=0.001309;MQ=59.8;MQRankSum=-18.39;QD=1.22;ReadPosRankSum=1.92;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1722,0:1722:0:0,0,54297"
NC_020431.seq	72732	NC_020431.seq__72732	G	A	184944	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.593;DP=1020940;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.046;QD=30.62;ReadPosRankSum=-0.359;SOR=0.573	GT:AD:DP:GQ:PL	"0/0:1592,0:1592:99:0,120,1800"
NC_020431.seq	72756	NC_020431.seq__72756	G	A	23095200	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.146;DP=982361;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.14;ReadPosRankSum=0.222;SOR=0.656	GT:AD:DP:GQ:PL	"1/1:6,1449:1455:99:55200,4143,0"
NC_020431.seq	72764	NC_020431.seq__72764	C	T	472451	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.355;DP=975754;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.66;ReadPosRankSum=-0.614;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1501,0:1501:99:0,120,1800"
NC_020431.seq	72800	NC_020431.seq__72800	G	A	106658	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.35;DP=975420;ExcessHet=0;FS=0;InbreedingCoeff=0.9924;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.96;ReadPosRankSum=0.228;SOR=0.447	GT:AD:DP:GQ:PL	"0/0:1501,0:1501:99:0,120,1800"
NC_020431.seq	72857	NC_020431.seq__72857	T	"C,A"	19805200	.	"AC=2,0;AF=0.53,0.005249;AN=2;BaseQRankSum=-1.189;DP=902292;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=404,4;MLEAF=0.53,0.005249;MQ=60;MQRankSum=0;QD=32.84;ReadPosRankSum=0.542;SOR=0.617"	GT:AD:DP:GQ:PL	"1/1:4,1235,12:1251:99:53950,3713,0,46266,3628,45268"
NC_020431.seq	72863	NC_020431.seq__72863	A	"*,G"	3027710	.	"AC=0,0;AF=0.126,0.415;AN=0;BaseQRankSum=-1.549;DP=925769;ExcessHet=0;FS=6.639;InbreedingCoeff=0.4868;MLEAC=62,69;MLEAF=0.126,0.14;MQ=15.48;MQRankSum=0;QD=34.42;ReadPosRankSum=0.511;SOR=0.148"	GT:AD:DP:PL	"./.:1519,0,0:1519:0,0,0,0,0,0"
NC_020431.seq	72864	NC_020431.seq__72864	A	G	1138180	.	AC=0;AF=0.092;AN=2;BaseQRankSum=-1.967;DP=914567;ExcessHet=-0;FS=0;InbreedingCoeff=0.906;MLEAC=50;MLEAF=0.065;MQ=47.09;MQRankSum=0;QD=28.03;ReadPosRankSum=2.38;SOR=0.51	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	72903	NC_020431.seq__72903	A	G	1603480	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.841;DP=911499;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=1.35;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	72930	NC_020431.seq__72930	G	A	510937	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.276;DP=912066;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.8;ReadPosRankSum=0.176;SOR=0.887	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73159	NC_020431.seq__73159	C	G	117249	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.167;DP=904120;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30;ReadPosRankSum=-0.573;SOR=0.43	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73172	NC_020431.seq__73172	C	T	977985	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.194;DP=906804;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.87;ReadPosRankSum=-0.109;SOR=0.55	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73203	NC_020431.seq__73203	G	A	269178	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.243;DP=907801;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=4.87;QD=25.5;ReadPosRankSum=-0.18;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73231	NC_020431.seq__73231	T	C	1054850	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.898;DP=910676;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=33.44;ReadPosRankSum=-0.162;SOR=0.519	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73241	NC_020431.seq__73241	C	T	158861	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.939;DP=911719;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.58;ReadPosRankSum=1.34;SOR=0.858	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73427	NC_020431.seq__73427	C	G	172739	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.184;DP=912153;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.044;QD=26.27;ReadPosRankSum=-0.369;SOR=0.632	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73439	NC_020431.seq__73439	G	A	163899	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.5;DP=913329;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.018;QD=29.27;ReadPosRankSum=0.831;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73460	NC_020431.seq__73460	A	G	306266	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.7;DP=915255;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.66;ReadPosRankSum=-0.547;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73579	NC_020431.seq__73579	T	A	117821	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.45;DP=915070;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.17;QD=27.17;ReadPosRankSum=0.396;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73612	NC_020431.seq__73612	G	A	173295	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.561;DP=915142;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.043;QD=29.92;ReadPosRankSum=-0.814;SOR=0.511	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73647	NC_020431.seq__73647	A	C	958936	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.192;DP=920234;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.92;ReadPosRankSum=0.503;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73707	NC_020431.seq__73707	G	A	109295	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.744;DP=919579;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=0.816;SOR=0.749	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73726	NC_020431.seq__73726	C	T	102666	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.965;DP=920017;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=40.38;ReadPosRankSum=-0.242;SOR=0.761	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73728	NC_020431.seq__73728	C	T	93851	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.467;DP=920021;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.98;ReadPosRankSum=-0.621;SOR=0.337	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73843	NC_020431.seq__73843	G	A	46201	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.236;DP=921478;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.58;ReadPosRankSum=1.65;SOR=0.546	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73855	NC_020431.seq__73855	G	T	165566	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.128;DP=922678;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9085;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.65;ReadPosRankSum=0.124;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1450,0:1450:99:0,111,1665"
NC_020431.seq	73896	NC_020431.seq__73896	T	G	880918	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.36;DP=1091164;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0.072;QD=30.13;ReadPosRankSum=0.177;SOR=0.791	GT:AD:DP:GQ:PL	"0/0:1761,0:1761:99:0,120,1800"
NC_020431.seq	73906	NC_020431.seq__73906	T	G	490424	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1;DP=1090288;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=28.33;ReadPosRankSum=-0.362;SOR=0.595	GT:AD:DP:GQ:PL	"0/0:1761,0:1761:99:0,120,1800"
NC_020431.seq	73966	NC_020431.seq__73966	G	A	304384	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.136;DP=1088379;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=34.32;ReadPosRankSum=0.775;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1761,0:1761:99:0,120,1800"
NC_020431.seq	73978	NC_020431.seq__73978	G	A	1887290	.	AC=2;AF=0.029;AN=2;BaseQRankSum=0.037;DP=1089875;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=32.65;ReadPosRankSum=0.163;SOR=0.662	GT:AD:DP:GQ:PL	"1/1:45,1773:1818:99:64591,3624,0"
NC_020431.seq	73994	NC_020431.seq__73994	G	A	166333	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.073;DP=1082401;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=-0.01;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74017	NC_020431.seq__74017	A	C	160535	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.92;DP=1083147;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.175;QD=32.3;ReadPosRankSum=-0.995;SOR=0.497	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74123	NC_020431.seq__74123	A	"*,C"	1006900	.	"AC=0,0;AF=0.017,0.002618;AN=2;BaseQRankSum=3.07;DP=1082840;ExcessHet=0;FS=2.068;InbreedingCoeff=0.932;MLEAC=13,2;MLEAF=0.017,0.002618;MQ=22.69;MQRankSum=-0.022;QD=32.78;ReadPosRankSum=-0.405;SOR=0.42"	GT:AD:DP:GQ:PL	"0/0:1554,0,0:1554:99:0,120,1800,120,1800,1800"
NC_020431.seq	74223	NC_020431.seq__74223	C	T	171403	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.178;DP=1081521;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.63;QD=30.77;ReadPosRankSum=-1.621;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74229	NC_020431.seq__74229	T	G	917906	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.619;DP=1084369;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=31.16;ReadPosRankSum=0.932;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74255	NC_020431.seq__74255	A	C	170027	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.36;DP=1079862;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.3;QD=29.79;ReadPosRankSum=1.37;SOR=0.528	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74299	NC_020431.seq__74299	A	T	99505	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.752;DP=1079659;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.84;ReadPosRankSum=2.72;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74381	NC_020431.seq__74381	G	A	296558	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.12;DP=1079932;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.68;ReadPosRankSum=2.47;SOR=0.492	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74570	NC_020431.seq__74570	G	A	357471	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.924;DP=1080255;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.95;ReadPosRankSum=0.252;SOR=0.676	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74600	NC_020431.seq__74600	A	C	419585	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.13;DP=1080281;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.36;ReadPosRankSum=0.39;SOR=0.563	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74601	NC_020431.seq__74601	A	G	67798	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.34;DP=1080308;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.93;ReadPosRankSum=1.27;SOR=0.579	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74738	NC_020431.seq__74738	G	A	178968	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.327;DP=1080385;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.034;QD=28.26;ReadPosRankSum=1.1;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	74773	NC_020431.seq__74773	T	A	1110520	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.864;DP=1080943;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=-0.019;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75024	NC_020431.seq__75024	A	C	338778	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.114;DP=1079955;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.69;ReadPosRankSum=0.626;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75028	NC_020431.seq__75028	A	C	105913	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.778;DP=1080398;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.63;ReadPosRankSum=1.11;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75081	NC_020431.seq__75081	A	C	3820790	.	AC=0;AF=0.094;AN=2;BaseQRankSum=0.71;DP=1094208;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=72;MLEAF=0.094;MQ=60;MQRankSum=0;QD=26.52;ReadPosRankSum=0.328;SOR=0.696	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75130	NC_020431.seq__75130	G	C	616450	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.307;DP=1088730;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.013;QD=26.76;ReadPosRankSum=1.09;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75142	NC_020431.seq__75142	C	T	412771	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.032;DP=1089402;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.58;ReadPosRankSum=-0.263;SOR=0.767	GT:AD:DP:GQ:PL	"0/0:1554,0:1554:99:0,120,1800"
NC_020431.seq	75165	NC_020431.seq__75165	A	T	905445	.	AC=1;AF=0.017;AN=2;BaseQRankSum=-4.321;DP=1086595;ExcessHet=3.4611;FS=8.37;InbreedingCoeff=-0.0173;MLEAC=13;MLEAF=0.017;MQ=59.38;MQRankSum=-6.94;QD=20.93;ReadPosRankSum=-1.722;SOR=1.307	GT:AD:DP:GQ:PL	"0/1:429,1115:1544:99:33640,0,14625"
NC_020431.seq	75167	NC_020431.seq__75167	A	T	853695	.	AC=1;AF=0.017;AN=2;BaseQRankSum=-3.087;DP=1085956;ExcessHet=3.4611;FS=7.022;InbreedingCoeff=-0.0173;MLEAC=13;MLEAF=0.017;MQ=59.37;MQRankSum=-6.947;QD=20.55;ReadPosRankSum=-0.39;SOR=1.264	GT:AD:DP:GQ:PL	"0/1:422,1108:1531:99:34787,0,14465"
NC_020431.seq	75169	NC_020431.seq__75169	A	T	843152	.	AC=1;AF=0.017;AN=2;BaseQRankSum=-0.21;DP=1085298;ExcessHet=3.4611;FS=8.044;InbreedingCoeff=-0.0173;MLEAC=13;MLEAF=0.017;MQ=59.36;MQRankSum=-7.309;QD=21.05;ReadPosRankSum=-1.127;SOR=1.237	GT:AD:DP:GQ:PL	"0/1:428,1084:1512:99:35009,0,14578"
NC_020431.seq	75204	NC_020431.seq__75204	A	T	171610	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.205;DP=1072232;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.031;QD=31.62;ReadPosRankSum=1.25;SOR=0.533	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75237	NC_020431.seq__75237	T	G	450931	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.42;DP=1072080;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=29.5;ReadPosRankSum=-0.112;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75258	NC_020431.seq__75258	C	T	178106	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.401;DP=1072112;ExcessHet=0.0028;FS=2.121;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=0.593;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75309	NC_020431.seq__75309	T	G	173437	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.73;DP=1072127;ExcessHet=0.0028;FS=1.46;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.033;QD=25.17;ReadPosRankSum=-1.106;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75314	NC_020431.seq__75314	C	T	1718500	.	AC=0;AF=0.035;AN=2;BaseQRankSum=1.97;DP=1074943;ExcessHet=-0;FS=0;InbreedingCoeff=0.9616;MLEAC=27;MLEAF=0.035;MQ=60;MQRankSum=0;QD=28.75;ReadPosRankSum=0.202;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75446	NC_020431.seq__75446	T	G	276392	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.56;DP=1074307;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.86;ReadPosRankSum=0.136;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:989,0:989:99:0,120,1800"
NC_020431.seq	75474	NC_020431.seq__75474	T	C	27001100	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.099;DP=1152208;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.42;ReadPosRankSum=0.046;SOR=0.693	GT:AD:DP:GQ:PL	"1/1:12,1706:1720:99:63197,4674,0"
NC_020431.seq	75494	NC_020431.seq__75494	A	C	171714	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.237;DP=1122195;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.03;QD=33.06;ReadPosRankSum=2.57;SOR=0.644	GT:AD:DP:GQ:PL	"0/0:1686,0:1686:99:0,120,1800"
NC_020431.seq	75575	NC_020431.seq__75575	G	T	439526	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.656;DP=1122013;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.46;ReadPosRankSum=0.752;SOR=0.788	GT:AD:DP:GQ:PL	"0/0:1686,0:1686:99:0,120,1800"
NC_020431.seq	75616	NC_020431.seq__75616	A	C	175319	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.163;DP=1121665;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.43;ReadPosRankSum=0.232;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1686,0:1686:99:0,120,1800"
NC_020431.seq	75750	NC_020431.seq__75750	G	A	152487	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.375;DP=1079356;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=30.24;ReadPosRankSum=0.262;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	75769	NC_020431.seq__75769	T	G	202178	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.23;DP=1079575;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.65;ReadPosRankSum=-0.236;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	75779	NC_020431.seq__75779	A	C	1132430	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.676;DP=1079995;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=29.44;ReadPosRankSum=-0.063;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	75848	NC_020431.seq__75848	G	T	142165	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.56;DP=1080051;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.83;ReadPosRankSum=-1.281;SOR=0.879	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	75858	NC_020431.seq__75858	A	C	68078	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.16;DP=1080016;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.07;ReadPosRankSum=-0.501;SOR=0.289	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	75928	NC_020431.seq__75928	C	T	843676	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-1.136;DP=1081262;ExcessHet=0;FS=0;InbreedingCoeff=0.9593;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=28.54;ReadPosRankSum=0.373;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	76061	NC_020431.seq__76061	A	C	1725810	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.6;DP=1084040;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.43;ReadPosRankSum=0.292;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1576,0:1576:99:0,120,1800"
NC_020431.seq	76070	NC_020431.seq__76070	G	T	27798000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.438;DP=1146055;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=35.17;ReadPosRankSum=0.072;SOR=0.695	GT:AD:DP:GQ:PL	"1/1:10,1760:1770:99:66215,4655,0"
NC_020431.seq	76418	NC_020431.seq__76418	T	G	193630	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.035;DP=1134478;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.77;ReadPosRankSum=-1.548;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76465	NC_020431.seq__76465	C	T	910305	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.21;DP=1134513;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.32;ReadPosRankSum=0.027;SOR=0.784	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76494	NC_020431.seq__76494	T	G	174397	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.917;DP=1135235;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.037;QD=29.51;ReadPosRankSum=-1.33;SOR=0.571	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76510	NC_020431.seq__76510	G	T	1279460	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.134;DP=1135847;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=27.67;ReadPosRankSum=0.099;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76521	NC_020431.seq__76521	G	A	117353	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.267;DP=1134886;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.46;ReadPosRankSum=0.927;SOR=0.26	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76537	NC_020431.seq__76537	C	T	908716	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.031;DP=1134137;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=25.21;ReadPosRankSum=0.484;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1763,0:1763:99:0,120,1800"
NC_020431.seq	76619	NC_020431.seq__76619	T	G	27092300	.	AC=2;AF=0.531;AN=2;BaseQRankSum=1.18;DP=1150598;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=35.23;ReadPosRankSum=0.32;SOR=0.594	GT:AD:DP:GQ:PL	"1/1:16,1731:1751:99:64149,4614,0"
NC_020431.seq	76711	NC_020431.seq__76711	T	G	379355	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.18;DP=1119812;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.02;QD=27.75;ReadPosRankSum=1.02;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76793	NC_020431.seq__76793	C	A	474107	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.147;DP=1120202;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=-0.156;SOR=0.781	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76811	NC_020431.seq__76811	G	T	898698	.	AC=0;AF=0.026;AN=2;BaseQRankSum=-0.09;DP=1120694;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=25.63;ReadPosRankSum=-0.082;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76866	NC_020431.seq__76866	C	"T,A"	1794050	.	"AC=0,0;AF=0.037,0.002618;AN=2;BaseQRankSum=-1.106;DP=1121023;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28,2;MLEAF=0.037,0.002618;MQ=60;MQRankSum=0;QD=36.25;ReadPosRankSum=-0.234;SOR=0.699"	GT:AD:DP:GQ:PL	"0/0:1671,0,0:1671:99:0,120,1800,120,1800,1800"
NC_020431.seq	76877	NC_020431.seq__76877	G	A	304660	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.354;DP=1117535;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=0.523;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76897	NC_020431.seq__76897	C	T	140700	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.22;DP=1117825;ExcessHet=0.0028;FS=1.445;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.8;ReadPosRankSum=0.665;SOR=0.63	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76898	NC_020431.seq__76898	T	C	359148	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.19;DP=1117233;ExcessHet=0;FS=2.107;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.75;ReadPosRankSum=0.868;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	76928	NC_020431.seq__76928	A	C	91593	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.77;DP=1117114;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.98;ReadPosRankSum=0.978;SOR=0.449	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	77031	NC_020431.seq__77031	C	A	141997	.	AC=0;AF=0.002625;AN=2;BaseQRankSum=4.8;DP=1109818;ExcessHet=0.0029;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002625;MQ=41.26;MQRankSum=0;QD=27.56;ReadPosRankSum=0.899;SOR=0.784	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	77042	NC_020431.seq__77042	A	G	149600	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.465;DP=1109007;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.194;QD=34.94;ReadPosRankSum=-1.183;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	77124	NC_020431.seq__77124	C	A	175949	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.355;DP=1109302;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.034;QD=33.56;ReadPosRankSum=-0.965;SOR=0.464	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	77142	NC_020431.seq__77142	C	T	6667130	.	AC=2;AF=0.123;AN=2;BaseQRankSum=-0.063;DP=1115765;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=24.97;ReadPosRankSum=0.017;SOR=0.628	GT:AD:DP:GQ:PL	"1/1:45,1646:1691:99:60293,3233,0"
NC_020431.seq	77153	NC_020431.seq__77153	T	G	114467	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.498;DP=1112637;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.29;ReadPosRankSum=-1.847;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77170	NC_020431.seq__77170	T	G	182137	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.77;DP=1112873;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.046;QD=28.51;ReadPosRankSum=1.59;SOR=0.493	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77191	NC_020431.seq__77191	C	T	243363	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.612;DP=1112866;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.06;QD=28.41;ReadPosRankSum=0.669;SOR=0.391	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77201	NC_020431.seq__77201	T	G	880479	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.05;DP=1114074;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.1;ReadPosRankSum=-0.276;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77219	NC_020431.seq__77219	T	G	49713	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.028;DP=1111858;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.03;ReadPosRankSum=0.073;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77294	NC_020431.seq__77294	T	C	156779	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.28;DP=1111848;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.75;ReadPosRankSum=0.707;SOR=0.431	GT:AD:DP:GQ:PL	"0/0:1676,0:1676:99:0,120,1800"
NC_020431.seq	77375	NC_020431.seq__77375	C	A	25763900	.	AC=2;AF=0.508;AN=2;BaseQRankSum=2.16;DP=1148406;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=388;MLEAF=0.508;MQ=60;MQRankSum=0;QD=34.58;ReadPosRankSum=0.333;SOR=0.321	GT:AD:DP:GQ:PL	"1/1:24,1739:1763:99:63174,4447,0"
NC_020431.seq	77381	NC_020431.seq__77381	T	C	1067080	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.31;DP=1091347;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.03;ReadPosRankSum=0.696;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77393	NC_020431.seq__77393	A	G	604713	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.003;DP=1088706;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.27;ReadPosRankSum=-0.406;SOR=0.56	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77429	NC_020431.seq__77429	T	C	63956	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.93;DP=1087463;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.44;ReadPosRankSum=-0.23;SOR=0.499	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77468	NC_020431.seq__77468	T	C	358854	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.638;DP=1087616;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=27.41;ReadPosRankSum=0.794;SOR=0.666	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77578	NC_020431.seq__77578	C	T	190953	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.728;DP=1086848;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=6.85;QD=29.25;ReadPosRankSum=1.27;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77580	NC_020431.seq__77580	G	C	120360	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.71;DP=1086581;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.92;ReadPosRankSum=0.585;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77627	NC_020431.seq__77627	A	G	49239	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.21;DP=1086309;ExcessHet=0.0028;FS=4.479;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.41;ReadPosRankSum=1.11;SOR=0.438	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77733	NC_020431.seq__77733	C	T	50539	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.12;DP=1084351;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.2;ReadPosRankSum=0.374;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77836	NC_020431.seq__77836	T	"C,G"	1342040	.	"AC=0,0;AF=0.024,0.002618;AN=2;BaseQRankSum=0.713;DP=1084679;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=18,2;MLEAF=0.024,0.002618;MQ=60;MQRankSum=0;QD=27.11;ReadPosRankSum=0.134;SOR=0.695"	GT:AD:DP:GQ:PL	"0/0:1637,0,0:1637:99:0,120,1800,120,1800,1800"
NC_020431.seq	77839	NC_020431.seq__77839	T	G	623139	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.466;DP=1085034;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=35.47;ReadPosRankSum=0.223;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77842	NC_020431.seq__77842	T	G	1052240	.	AC=0;AF=0.047;AN=2;BaseQRankSum=1.17;DP=1086306;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=36;MLEAF=0.047;MQ=60;MQRankSum=0;QD=32.92;ReadPosRankSum=-0.273;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	77944	NC_020431.seq__77944	A	G	1047700	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-1.035;DP=1085925;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=0.312;SOR=0.789	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78028	NC_020431.seq__78028	T	C	304023	.	AC=0;AF=0.005333;AN=2;BaseQRankSum=4.27;DP=1086749;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005333;MQ=29.39;MQRankSum=0;QD=29.97;ReadPosRankSum=2.16;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78036	NC_020431.seq__78036	C	T	2073450	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-1.316;DP=1090696;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=33.31;ReadPosRankSum=0.194;SOR=0.734	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78063	NC_020431.seq__78063	C	T	72114	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.62;DP=1087174;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.38;ReadPosRankSum=1.35;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78092	NC_020431.seq__78092	C	T	168963	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.14;DP=1087145;ExcessHet=0.0028;FS=1.508;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.198;QD=29.55;ReadPosRankSum=0.502;SOR=0.717	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78166	NC_020431.seq__78166	A	G	168137	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.4;DP=1087098;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.03;QD=28.78;ReadPosRankSum=-2.208;SOR=0.773	GT:AD:DP:GQ:PL	"0/0:1637,0:1637:99:0,120,1800"
NC_020431.seq	78173	NC_020431.seq__78173	T	C	27426500	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.196;DP=1142613;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=0.097;SOR=0.731	GT:AD:DP:GQ:PL	"1/1:7,1784:1791:99:66231,5089,0"
NC_020431.seq	78239	NC_020431.seq__78239	T	C	310273	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.035;DP=1088793;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.65;ReadPosRankSum=2.14;SOR=0.524	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78246	NC_020431.seq__78246	C	T	178736	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.033;DP=1088259;ExcessHet=0.0028;FS=2.158;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.8;ReadPosRankSum=-1.239;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78301	NC_020431.seq__78301	T	G	103331	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.95;DP=1088466;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.44;ReadPosRankSum=1.74;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78352	NC_020431.seq__78352	A	C	264413	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.174;DP=1088158;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.023;QD=31.56;ReadPosRankSum=0.963;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78376	NC_020431.seq__78376	T	G	904877	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.194;DP=1087882;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.73;ReadPosRankSum=0.628;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78559	NC_020431.seq__78559	A	G	196043	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.032;DP=1085855;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.38;ReadPosRankSum=-1.793;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78574	NC_020431.seq__78574	C	T	167428	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.36;DP=1085658;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.025;QD=36.76;ReadPosRankSum=-0.969;SOR=0.534	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78721	NC_020431.seq__78721	C	A	279882	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.737;DP=1085636;ExcessHet=0;FS=1.658;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.04;ReadPosRankSum=0.75;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78733	NC_020431.seq__78733	G	A	196495	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.406;DP=1085639;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.36;ReadPosRankSum=-1.51;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1716,0:1716:99:0,120,1800"
NC_020431.seq	78741	NC_020431.seq__78741	G	A	24851800	.	AC=2;AF=0.508;AN=2;BaseQRankSum=0.463;DP=1105138;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=388;MLEAF=0.508;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=-0.045;SOR=0.655	GT:AD:DP:GQ:PL	"1/1:21,1728:1749:99:65341,4555,0"
NC_020431.seq	78837	NC_020431.seq__78837	G	T	278397	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.839;DP=1094605;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.02;ReadPosRankSum=1.55;SOR=0.817	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	78862	NC_020431.seq__78862	C	T	853827	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.25;DP=1095396;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=22.6;ReadPosRankSum=-1.254;SOR=0.808	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	78865	NC_020431.seq__78865	T	C	5717880	.	AC=0;AF=0.196;AN=2;BaseQRankSum=0.381;DP=1106938;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=150;MLEAF=0.196;MQ=60;MQRankSum=0;QD=32.24;ReadPosRankSum=0.066;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	78891	NC_020431.seq__78891	G	C	62551	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.3;DP=1104391;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.25;ReadPosRankSum=-1.376;SOR=0.62	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	78947	NC_020431.seq__78947	T	A	253684	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.48;DP=1104556;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.03;QD=32.97;ReadPosRankSum=-0.258;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	79006	NC_020431.seq__79006	G	T	100613	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.537;DP=1104647;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.7;ReadPosRankSum=1.87;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	79035	NC_020431.seq__79035	C	T	377337	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.992;DP=1104687;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.23;ReadPosRankSum=0.665;SOR=0.45	GT:AD:DP:GQ:PL	"0/0:1690,0:1690:99:0,120,1800"
NC_020431.seq	79040	NC_020431.seq__79040	A	T	8167360	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.049;DP=1111663;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=29.03;ReadPosRankSum=0.444;SOR=0.725	GT:AD:DP:GQ:PL	"1/1:42,1675:1717:99:62498,3422,0"
NC_020431.seq	79051	NC_020431.seq__79051	G	A	98766	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.596;DP=1108995;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.94;ReadPosRankSum=0.271;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79068	NC_020431.seq__79068	T	G	329498	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.06;DP=1109165;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=32.21;ReadPosRankSum=0.607;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79075	NC_020431.seq__79075	G	A	184760	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.366;DP=1109015;ExcessHet=0.0028;FS=1.642;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.22;ReadPosRankSum=-0.988;SOR=0.443	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79076	NC_020431.seq__79076	G	A	146260	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.7;DP=1109096;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.45;ReadPosRankSum=-0.077;SOR=0.254	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79096	NC_020431.seq__79096	G	T	186669	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.856;DP=1109002;ExcessHet=0.0028;FS=1.613;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.023;QD=31.26;ReadPosRankSum=-0.478;SOR=0.473	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79121	NC_020431.seq__79121	T	G	46497	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.959;DP=1108825;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.64;ReadPosRankSum=0.194;SOR=0.328	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79135	NC_020431.seq__79135	A	C	422965	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.031;DP=1108629;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.98;ReadPosRankSum=0.782;SOR=0.45	GT:AD:DP:GQ:PL	"0/0:1744,0:1744:99:0,120,1800"
NC_020431.seq	79311	NC_020431.seq__79311	C	A	44662	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.834;DP=1106850;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9711;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.02;ReadPosRankSum=1.54;SOR=0.418	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:99:0,120,1800"
NC_020431.seq	79314	NC_020431.seq__79314	T	C	1524680	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.317;DP=1106626;ExcessHet=-0;FS=0;InbreedingCoeff=0.9978;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=26.71;ReadPosRankSum=0.058;SOR=0.734	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:99:0,120,1800"
NC_020431.seq	79329	NC_020431.seq__79329	A	"*,C"	24417300	.	"AC=2,0;AF=0.535,0.005236;AN=2;BaseQRankSum=1.31;DP=1088839;ExcessHet=0;FS=0;InbreedingCoeff=0.9938;MLEAC=409,4;MLEAF=0.535,0.005236;MQ=6.32;MQRankSum=0;QD=34.64;ReadPosRankSum=0.687;SOR=0.631"	GT:AD:DP:GQ:PL	"1/1:5,1680,0:1685:99:62560,4876,0,62575,5051,62750"
NC_020431.seq	79396	NC_020431.seq__79396	A	C	89410	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.711;DP=1068573;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=10.92;QD=29.04;ReadPosRankSum=1.18;SOR=0.543	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79513	NC_020431.seq__79513	G	T	172521	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.266;DP=1069014;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.68;ReadPosRankSum=-0.24;SOR=0.756	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79548	NC_020431.seq__79548	C	T	193373	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.464;DP=1069202;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-2.598;QD=29.44;ReadPosRankSum=0.234;SOR=0.653	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79591	NC_020431.seq__79591	G	A	260988	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.896;DP=1069645;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=-0.169;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79628	NC_020431.seq__79628	T	C	291686	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.865;DP=1069290;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.04;ReadPosRankSum=0.32;SOR=0.517	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79687	NC_020431.seq__79687	G	A	105702	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.385;DP=1069087;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=7.18;QD=31.24;ReadPosRankSum=1.64;SOR=0.502	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79696	NC_020431.seq__79696	C	T	2654370	.	AC=0;AF=0.045;AN=2;BaseQRankSum=-0.1;DP=1074721;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=34;MLEAF=0.045;MQ=60;MQRankSum=0;QD=29.14;ReadPosRankSum=0.155;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79811	NC_020431.seq__79811	A	G	1084320	.	AC=0;AF=0.029;AN=2;BaseQRankSum=0.01;DP=1061708;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=0;QD=30.42;ReadPosRankSum=1.12;SOR=0.751	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79865	NC_020431.seq__79865	C	T	210334	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.03;DP=1060532;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.105;QD=30.74;ReadPosRankSum=0.079;SOR=0.521	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79872	NC_020431.seq__79872	A	T	2675560	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.378;DP=1066530;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=30.92;ReadPosRankSum=0.196;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79888	NC_020431.seq__79888	A	C	135226	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.05;DP=1062155;ExcessHet=0.0028;FS=1.059;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.86;ReadPosRankSum=0.225;SOR=0.879	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	79971	NC_020431.seq__79971	C	T	278052	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.536;DP=1062395;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.55;ReadPosRankSum=1.3;SOR=0.922	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80025	NC_020431.seq__80025	C	T	765924	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.878;DP=1063572;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.8;ReadPosRankSum=-0.136;SOR=0.585	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80031	NC_020431.seq__80031	A	G	862848	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.119;DP=1063613;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=-0.046;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80104	NC_020431.seq__80104	G	A	132668	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.922;DP=1063634;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.9;ReadPosRankSum=0.259;SOR=0.799	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80151	NC_020431.seq__80151	G	A	92924.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.18;DP=1062672;ExcessHet=0;FS=1.627;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=-0.444;SOR=0.483	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80246	NC_020431.seq__80246	T	G	60936	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.608;DP=1062698;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.27;ReadPosRankSum=-0.797;SOR=0.456	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80256	NC_020431.seq__80256	G	T	283531	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.141;DP=1063023;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.91;ReadPosRankSum=0.918;SOR=0.608	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80289	NC_020431.seq__80289	T	G	206082	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.17;DP=1067863;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.058;QD=28.55;ReadPosRankSum=1.08;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80303	NC_020431.seq__80303	C	A	293930	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.318;DP=1067652;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.55;ReadPosRankSum=-0.21;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80353	NC_020431.seq__80353	C	T	125475	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.901;DP=1067469;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.5;ReadPosRankSum=-1.82;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80397	NC_020431.seq__80397	A	C	262537	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.08;DP=1066700;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=59.96;MQRankSum=-1.135;QD=31.6;ReadPosRankSum=2.97;SOR=0.855	GT:AD:DP:GQ:PL	"0/0:1608,0:1608:99:0,120,1800"
NC_020431.seq	80411	NC_020431.seq__80411	T	G	150490	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.121;DP=1080576;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9202;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=0.526;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1824,0:1824:90:0,90,1350"
NC_020431.seq	80425	NC_020431.seq__80425	C	"G,*"	27509700	.	"AC=2,0;AF=0.429,0.099;AN=2;BaseQRankSum=-0.147;DP=1101563;ExcessHet=-0;FS=0;InbreedingCoeff=0.979;MLEAC=328,76;MLEAF=0.429,0.099;MQ=55.26;MQRankSum=0;QD=24.26;ReadPosRankSum=0.084;SOR=0.705"	GT:AD:DP:GQ:PL	"1/1:19,1766,0:1785:99:77912,4602,0,77977,5385,78760"
NC_020431.seq	80427	NC_020431.seq__80427	T	"*,G"	3526030	.	"AC=0,0;AF=0.099,0.005236;AN=2;BaseQRankSum=2.49;DP=1113384;ExcessHet=-0;FS=0;InbreedingCoeff=0.9441;MLEAC=76,4;MLEAF=0.099,0.005236;MQ=16.01;MQRankSum=0.037;QD=26.84;ReadPosRankSum=2.51;SOR=0.797"	GT:AD:DP:GQ:PL	"0/0:1828,0,0:1828:99:0,120,1800,120,1800,1800"
NC_020431.seq	80438	NC_020431.seq__80438	C	T	1569610	.	AC=0;AF=0.028;AN=2;BaseQRankSum=1.57;DP=1095655;ExcessHet=0;FS=0;InbreedingCoeff=0.9459;MLEAC=18;MLEAF=0.026;MQ=32.68;MQRankSum=0;QD=28.74;ReadPosRankSum=0.755;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1828,0:1828:99:0,120,1800"
NC_020431.seq	80523	NC_020431.seq__80523	C	T	315391	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.97;DP=1165432;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.67;ReadPosRankSum=-0.303;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1948,0:1948:99:0,120,1800"
NC_020431.seq	80526	NC_020431.seq__80526	G	T	43447600	.	AC=2;AF=0.89;AN=2;BaseQRankSum=0.475;DP=1164918;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=30.75;ReadPosRankSum=0.088;SOR=0.654	GT:AD:DP:GQ:PL	"1/1:0,1953:1953:99:72743,5901,0"
NC_020431.seq	80534	NC_020431.seq__80534	C	T	101952	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.77;DP=1118223;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.59;ReadPosRankSum=-1.781;SOR=0.331	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80653	NC_020431.seq__80653	A	G	204774	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.531;DP=1121880;ExcessHet=0;FS=1.747;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.94;ReadPosRankSum=0.736;SOR=1.142	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80659	NC_020431.seq__80659	C	T	276974	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.09;DP=1122016;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.83;ReadPosRankSum=0.728;SOR=0.626	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80677	NC_020431.seq__80677	G	A	374550	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.075;DP=1122319;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.024;QD=30.19;ReadPosRankSum=0.205;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80682	NC_020431.seq__80682	A	G	321440	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.89;DP=1122455;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.75;ReadPosRankSum=0.513;SOR=0.578	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80701	NC_020431.seq__80701	C	T	170860	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.415;DP=1121954;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.93;ReadPosRankSum=-2.248;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80707	NC_020431.seq__80707	T	C	1368040	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.07;DP=1122770;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=28.28;ReadPosRankSum=0.108;SOR=0.602	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80748	NC_020431.seq__80748	A	G	164948	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.31;DP=1118725;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.025;QD=30.54;ReadPosRankSum=0.697;SOR=0.578	GT:AD:DP:GQ:PL	"0/0:1901,0:1901:99:0,120,1800"
NC_020431.seq	80791	NC_020431.seq__80791	C	T	27801600	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.164;DP=1157011;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=31.41;ReadPosRankSum=-0.19;SOR=0.658	GT:AD:DP:GQ:PL	"1/1:9,1934:1943:99:73313,5496,0"
NC_020431.seq	80900	NC_020431.seq__80900	A	C	106532	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.16;DP=1118668;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.41;ReadPosRankSum=1.98;SOR=0.636	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	80953	NC_020431.seq__80953	C	T	939413	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.114;DP=1118819;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.04;ReadPosRankSum=-0.404;SOR=0.557	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	80974	NC_020431.seq__80974	T	G	3284540	.	AC=0;AF=0.089;AN=2;BaseQRankSum=1.21;DP=1119286;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=31.63;ReadPosRankSum=0.382;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	80982	NC_020431.seq__80982	T	A	79464	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.848;DP=1118745;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.09;ReadPosRankSum=-0.069;SOR=0.267	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81037	NC_020431.seq__81037	T	C	366412	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.15;DP=1118731;ExcessHet=0;FS=2.158;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.06;ReadPosRankSum=-0.377;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81059	NC_020431.seq__81059	T	G	1373770	.	AC=0;AF=0.026;AN=2;BaseQRankSum=0.92;DP=1118108;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=31.13;ReadPosRankSum=0.562;SOR=0.818	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81074	NC_020431.seq__81074	C	T	5719650	.	AC=0;AF=0.13;AN=2;BaseQRankSum=0.342;DP=1115893;ExcessHet=-0;FS=0;InbreedingCoeff=0.9884;MLEAC=99;MLEAF=0.13;MQ=60;MQRankSum=0;QD=33.38;ReadPosRankSum=-0.001;SOR=0.748	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81091	NC_020431.seq__81091	C	T	313300	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.031;DP=1106364;ExcessHet=0;FS=3.054;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.93;ReadPosRankSum=1.3;SOR=0.545	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81097	NC_020431.seq__81097	T	G	107419	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.225;DP=1105873;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.71;ReadPosRankSum=1.58;SOR=0.49	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81099	NC_020431.seq__81099	A	G	119938	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.814;DP=1105767;ExcessHet=0.0028;FS=2.081;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.17;ReadPosRankSum=-1.252;SOR=0.563	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81215	NC_020431.seq__81215	G	A	881548	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.09;DP=1104948;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=28.92;ReadPosRankSum=0.115;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81222	NC_020431.seq__81222	T	G	911538	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.06;DP=1103250;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.6;ReadPosRankSum=0.549;SOR=0.702	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81225	NC_020431.seq__81225	C	T	186972	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.192;DP=1101569;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.152;QD=31.79;ReadPosRankSum=-0.54;SOR=0.418	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81322	NC_020431.seq__81322	A	G	173468	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.932;DP=1099822;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.44;ReadPosRankSum=-0.673;SOR=0.573	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81390	NC_020431.seq__81390	T	C	178211	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.163;DP=1099746;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.043;QD=30.17;ReadPosRankSum=0.245;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81531	NC_020431.seq__81531	C	T	355486	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.41;DP=1099838;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.17;ReadPosRankSum=0.494;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81602	NC_020431.seq__81602	C	A	297921	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.16;DP=1099243;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.77;ReadPosRankSum=1.33;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81663	NC_020431.seq__81663	G	A	276308	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.75;DP=1098795;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.044;QD=30.76;ReadPosRankSum=0.819;SOR=0.546	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81669	NC_020431.seq__81669	T	G	163701	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.113;DP=1098343;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.57;ReadPosRankSum=0.492;SOR=0.583	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81670	NC_020431.seq__81670	C	A	197534	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.446;DP=1098291;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.41;ReadPosRankSum=1.3;SOR=0.546	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81672	NC_020431.seq__81672	G	T	164684	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.492;DP=1097995;ExcessHet=0.0028;FS=1.706;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.022;QD=28.24;ReadPosRankSum=-0.143;SOR=0.553	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81709	NC_020431.seq__81709	A	G	1206560	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.628;DP=1098272;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=20.43;ReadPosRankSum=0.015;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81711	NC_020431.seq__81711	G	A	184277	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.99;DP=1096586;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9987;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.37;ReadPosRankSum=0.261;SOR=0.718	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81725	NC_020431.seq__81725	C	T	742661	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.046;DP=1097109;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.92;ReadPosRankSum=0.538;SOR=0.585	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81755	NC_020431.seq__81755	G	A	98970.3	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-1.297;DP=1096014;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=34.53;ReadPosRankSum=0.528;SOR=0.53	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81803	NC_020431.seq__81803	A	T	920377	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.023;DP=1095769;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.55;ReadPosRankSum=-0.119;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81863	NC_020431.seq__81863	G	A	87797	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.539;DP=1095497;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.95;ReadPosRankSum=0.234;SOR=0.321	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	81915	NC_020431.seq__81915	A	G	6524840	.	AC=2;AF=0.123;AN=2;BaseQRankSum=0.192;DP=1106339;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=94;MLEAF=0.123;MQ=60;MQRankSum=0;QD=35.72;ReadPosRankSum=-0.224;SOR=0.654	GT:AD:DP:GQ:PL	"1/1:29,1793:1822:99:64928,4397,0"
NC_020431.seq	81970	NC_020431.seq__81970	C	T	926534	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.553;DP=1098679;ExcessHet=0;FS=0;InbreedingCoeff=0.9992;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.09;ReadPosRankSum=-0.608;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1702,0:1702:99:0,120,1800"
NC_020431.seq	81999	NC_020431.seq__81999	T	G	1086310	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.123;DP=1098179;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.03;ReadPosRankSum=-0.04;SOR=0.749	GT:AD:DP:GQ:PL	"0/0:1702,0:1702:99:0,120,1800"
NC_020431.seq	82015	NC_020431.seq__82015	A	G	275074	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.448;DP=1098417;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.46;ReadPosRankSum=2.32;SOR=0.6	GT:AD:DP:GQ:PL	"0/0:1702,0:1702:99:0,120,1800"
NC_020431.seq	82042	NC_020431.seq__82042	T	G	118801	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.52;DP=1098454;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=5.19;QD=28.36;ReadPosRankSum=1.11;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1702,0:1702:99:0,120,1800"
NC_020431.seq	82053	NC_020431.seq__82053	C	A	26515100	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.893;DP=1121656;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=34.19;ReadPosRankSum=0.212;SOR=0.616	GT:AD:DP:GQ:PL	"1/1:11,1708:1719:99:64712,4745,0"
NC_020431.seq	82097	NC_020431.seq__82097	T	C	567323	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.152;DP=1114026;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=26.15;ReadPosRankSum=-0.347;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1658,0:1658:99:0,120,1800"
NC_020431.seq	82133	NC_020431.seq__82133	C	A	163059	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.291;DP=1113934;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.37;ReadPosRankSum=-0.18;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1658,0:1658:99:0,120,1800"
NC_020431.seq	82141	NC_020431.seq__82141	T	G	896870	.	AC=0;AF=0.018;AN=2;BaseQRankSum=2.34;DP=1113782;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=26.18;ReadPosRankSum=0.813;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1658,0:1658:99:0,120,1800"
NC_020431.seq	82161	NC_020431.seq__82161	A	C	1053320	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.063;DP=1112983;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=0.293;SOR=0.74	GT:AD:DP:GQ:PL	"0/0:1658,0:1658:99:0,120,1800"
NC_020431.seq	82171	NC_020431.seq__82171	C	T	226313	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.26;DP=1113347;ExcessHet=0;FS=1.635;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.54;QD=31.14;ReadPosRankSum=0.478;SOR=0.442	GT:AD:DP:GQ:PL	"0/0:1658,0:1658:99:0,120,1800"
NC_020431.seq	82208	NC_020431.seq__82208	G	T	40781000	.	AC=2;AF=0.89;AN=2;BaseQRankSum=0.861;DP=1131871;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=29.29;ReadPosRankSum=0.123;SOR=0.641	GT:AD:DP:GQ:PL	"1/1:0,1650:1650:99:63648,4960,0"
NC_020431.seq	82243	NC_020431.seq__82243	C	T	3071960	.	AC=0;AF=0.089;AN=2;BaseQRankSum=-0.607;DP=1102320;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=26.77;ReadPosRankSum=0.148;SOR=0.633	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82268	NC_020431.seq__82268	C	T	184781	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.821;DP=1101054;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.015;QD=32.66;ReadPosRankSum=-1.398;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82295	NC_020431.seq__82295	G	A	43822	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.26;DP=1101117;ExcessHet=0.0028;FS=2.219;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.72;ReadPosRankSum=1.51;SOR=0.496	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82297	NC_020431.seq__82297	G	A	321947	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.21;DP=1101057;ExcessHet=0;FS=0;InbreedingCoeff=0.9993;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.6;ReadPosRankSum=-0.284;SOR=0.693	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82523	NC_020431.seq__82523	G	A	834636	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.513;DP=1098758;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=25.42;ReadPosRankSum=2.04;SOR=0.859	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82542	NC_020431.seq__82542	A	G	49556	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.049;DP=1099252;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.27;ReadPosRankSum=-0.031;SOR=0.121	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82571	NC_020431.seq__82571	C	G	253940	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.03;DP=1099589;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.01;ReadPosRankSum=-0.236;SOR=0.597	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82588	NC_020431.seq__82588	T	C	459931	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.098;DP=1100567;ExcessHet=0;FS=0;InbreedingCoeff=0.9996;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=28.37;ReadPosRankSum=1.05;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82669	NC_020431.seq__82669	G	T	108416	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.04;DP=1100408;ExcessHet=0.0001;FS=2.121;InbreedingCoeff=0.8882;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.1;ReadPosRankSum=1.29;SOR=0.516	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82680	NC_020431.seq__82680	G	A	1099500	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.877;DP=1101654;ExcessHet=0;FS=0;InbreedingCoeff=0.9649;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.27;ReadPosRankSum=0.705;SOR=0.796	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82702	NC_020431.seq__82702	T	G	166214	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-3.885;DP=1102202;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.34;ReadPosRankSum=11.31;SOR=0.595	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	82780	NC_020431.seq__82780	T	G	532148	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.9;DP=1108938;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.37;ReadPosRankSum=1.55;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	83369	NC_020431.seq__83369	T	C	495902	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.759;DP=1113636;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=26.02;ReadPosRankSum=0.859;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	83580	NC_020431.seq__83580	A	C	8110720	.	AC=0;AF=0.099;AN=2;BaseQRankSum=1.06;DP=1197977;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=-0.01;QD=30.74;ReadPosRankSum=0.443;SOR=0.68	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	83799	NC_020431.seq__83799	T	G	184721	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.134;DP=1190241;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.118;QD=34.72;ReadPosRankSum=0.329;SOR=0.405	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84002	NC_020431.seq__84002	G	T	143184	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.994;DP=1189623;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.013;QD=31.09;ReadPosRankSum=-1.998;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84178	NC_020431.seq__84178	G	A	173115	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.007;DP=1189519;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=-0.009;QD=30.5;ReadPosRankSum=1.38;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84181	NC_020431.seq__84181	G	T	140323	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-2.068;DP=1189521;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=31.23;ReadPosRankSum=0.669;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84272	NC_020431.seq__84272	T	G	700468	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.853;DP=1199204;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=0.834;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84586	NC_020431.seq__84586	T	G	169366	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.57;DP=1200449;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.67;ReadPosRankSum=0.984;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	84726	NC_020431.seq__84726	A	C	6941080	.	AC=0;AF=0.076;AN=2;BaseQRankSum=1.98;DP=1207056;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=58;MLEAF=0.076;MQ=60;MQRankSum=-0.019;QD=29.02;ReadPosRankSum=0.631;SOR=0.77	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	85080	NC_020431.seq__85080	T	G	2370480	.	AC=0;AF=0.029;AN=2;BaseQRankSum=1.98;DP=1220367;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=22;MLEAF=0.029;MQ=60;MQRankSum=-0.026;QD=28.22;ReadPosRankSum=0.666;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	85541	NC_020431.seq__85541	A	C	158236	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.35;DP=1213144;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.21;ReadPosRankSum=0.62;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	86357	NC_020431.seq__86357	A	C	3386940	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.56;DP=1236417;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=-0.053;QD=31.16;ReadPosRankSum=0.225;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	86671	NC_020431.seq__86671	T	G	5628330	.	AC=0;AF=0.089;AN=2;BaseQRankSum=-0.342;DP=1299027;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=30.1;ReadPosRankSum=0.643;SOR=0.766	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87184	NC_020431.seq__87184	A	C	286737	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.17;DP=1278371;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.131;QD=27.89;ReadPosRankSum=0.55;SOR=0.6	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87225	NC_020431.seq__87225	T	G	217780	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.33;DP=1278728;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.84;ReadPosRankSum=0.741;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87241	NC_020431.seq__87241	A	C	463231	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.84;DP=1284305;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.06;QD=32.06;ReadPosRankSum=0.5;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87269	NC_020431.seq__87269	C	A	175347	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.747;DP=1284285;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.49;ReadPosRankSum=-0.734;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87393	NC_020431.seq__87393	A	C	413202	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.19;DP=1284594;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=12.77;QD=23.49;ReadPosRankSum=0.804;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87642	NC_020431.seq__87642	A	C	248446	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.463;DP=1283970;ExcessHet=0.0028;FS=2.003;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.052;QD=28.61;ReadPosRankSum=-0.496;SOR=0.401	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87698	NC_020431.seq__87698	T	C	158065	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.264;DP=1284415;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.019;QD=32.96;ReadPosRankSum=0.662;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	87794	NC_020431.seq__87794	T	G	577296	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.37;DP=1289796;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.107;QD=27.26;ReadPosRankSum=1.05;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88044	NC_020431.seq__88044	A	C	485967	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.12;DP=1289767;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.001;QD=30.42;ReadPosRankSum=-0.609;SOR=0.464	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88108	NC_020431.seq__88108	C	G	158641	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.73;DP=1288763;ExcessHet=0.0028;FS=1.12;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=0.376;SOR=0.557	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88284	NC_020431.seq__88284	A	G	161077	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.42;DP=1290970;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.31;ReadPosRankSum=1.64;SOR=0.593	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88331	NC_020431.seq__88331	G	A	167688	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-2.166;DP=1290623;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.34;ReadPosRankSum=1.88;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88663	NC_020431.seq__88663	G	A	3507620	.	AC=0;AF=0.039;AN=2;BaseQRankSum=-0.72;DP=1293438;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=-0.053;QD=29.57;ReadPosRankSum=0.606;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88680	NC_020431.seq__88680	A	C	130.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.63;DP=1286472;ExcessHet=3.0103;FS=0.976;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.1;ReadPosRankSum=-0.619;SOR=0.844	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020431.seq	88689	NC_020431.seq__88689	T	C	3114210	.	AC=2;AF=0.034;AN=2;BaseQRankSum=-0.273;DP=1314185;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=-0.008;QD=28.93;ReadPosRankSum=-0.136;SOR=0.53	GT:AD:DP:GQ:PL	"1/1:80,3222:3303:99:118999,7073,0"
NC_020431.seq	88879	NC_020431.seq__88879	A	C	249488	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.32;DP=1306655;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.37;ReadPosRankSum=0.532;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	88939	NC_020431.seq__88939	T	G	233767	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.79;DP=1306015;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.53;ReadPosRankSum=0.474;SOR=0.54	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89070	NC_020431.seq__89070	T	G	182916	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.47;DP=1307650;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.9;ReadPosRankSum=-1.252;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89144	NC_020431.seq__89144	T	G	159605	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.03;DP=1307259;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.58;ReadPosRankSum=-1.036;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89406	NC_020431.seq__89406	A	G	862704	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.359;DP=1309462;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0.007;QD=34.07;ReadPosRankSum=0.904;SOR=0.565	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89908	NC_020431.seq__89908	T	C	163171	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.15;DP=1309168;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.25;QD=34.61;ReadPosRankSum=0.511;SOR=0.469	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89911	NC_020431.seq__89911	T	G	331545	.	AC=0;AF=0.009162;AN=2;BaseQRankSum=2.32;DP=1439772;ExcessHet=11.1465;FS=0.897;InbreedingCoeff=0.0297;MLEAC=9;MLEAF=0.012;MQ=59.81;MQRankSum=0;QD=30.94;ReadPosRankSum=16.53;SOR=0.81	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020431.seq	89954	NC_020431.seq__89954	G	"*,A"	22220600	.	"AC=2,0;AF=0.508,0.007853;AN=2;BaseQRankSum=3.46;DP=1735994;ExcessHet=0;FS=0;InbreedingCoeff=0.9356;MLEAC=389,6;MLEAF=0.509,0.007853;MQ=7.66;MQRankSum=0;QD=28.82;ReadPosRankSum=-5.184;SOR=0.792"	GT:AD:DP:GQ:PL	"1/1:242,1565,0:1811:99:51567,2965,0,57859,9439,119870"
NC_020431.seq	90516	NC_020431.seq__90516	A	C	1317870	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.19;DP=1553102;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=32.29;ReadPosRankSum=0.493;SOR=0.757	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	90524	NC_020431.seq__90524	A	C	244990	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.28;DP=1552421;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.069;QD=32.53;ReadPosRankSum=-0.096;SOR=0.302	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	90645	NC_020431.seq__90645	G	C	172346	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.424;DP=1553215;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.029;QD=34.27;ReadPosRankSum=2.08;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	90722	NC_020431.seq__90722	T	G	268558	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.322;DP=1553586;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.018;QD=31.89;ReadPosRankSum=-0.293;SOR=0.826	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	90753	NC_020431.seq__90753	C	T	2565130	.	AC=0;AF=0.033;AN=2;BaseQRankSum=0.998;DP=1562820;ExcessHet=0;FS=0;InbreedingCoeff=0.8759;MLEAC=25;MLEAF=0.033;MQ=60;MQRankSum=0;QD=36.94;ReadPosRankSum=0.511;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91010	NC_020431.seq__91010	C	A	168222	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.163;DP=1559613;ExcessHet=0.0028;FS=1.263;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.025;QD=34.74;ReadPosRankSum=-0.639;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91046	NC_020431.seq__91046	C	A	167306	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.501;DP=1559569;ExcessHet=0.0028;FS=1.248;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-1.206;QD=34.86;ReadPosRankSum=1.05;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91097	NC_020431.seq__91097	C	T	479924	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.155;DP=1561465;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.059;QD=32.35;ReadPosRankSum=0.803;SOR=0.491	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91478	NC_020431.seq__91478	C	T	171587	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.249;DP=1561211;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=2.65;QD=33.73;ReadPosRankSum=0.529;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91550	NC_020431.seq__91550	C	A	491227	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.46;DP=1561597;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.001;QD=39.31;ReadPosRankSum=0.601;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91759	NC_020431.seq__91759	A	C	176849	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.27;DP=1561074;ExcessHet=0.0028;FS=1.195;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.031;QD=34.34;ReadPosRankSum=-0.994;SOR=0.724	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91795	NC_020431.seq__91795	T	C	218014	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=1.42;DP=1561456;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0.041;QD=30.74;ReadPosRankSum=-1.265;SOR=0.752	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	91813	NC_020431.seq__91813	G	A	222085	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.41;DP=1561601;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0.043;QD=27.52;ReadPosRankSum=0.689;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92183	NC_020431.seq__92183	T	G	243307	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.56;DP=1565163;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.031;QD=32.3;ReadPosRankSum=-0.1;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92200	NC_020431.seq__92200	T	G	3150250	.	AC=0;AF=0.037;AN=2;BaseQRankSum=2.25;DP=1577049;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.13;ReadPosRankSum=0.024;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92470	NC_020431.seq__92470	T	G	561374	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.58;DP=1575633;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.046;QD=30.75;ReadPosRankSum=0.092;SOR=0.479	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92629	NC_020431.seq__92629	T	G	636614	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-0.413;DP=1576930;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=-0.001;QD=26.13;ReadPosRankSum=0.158;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92675	NC_020431.seq__92675	C	A	101034	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.89;DP=1577080;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=0.22;SOR=0.495	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92775	NC_020431.seq__92775	A	C	1419270	.	AC=0;AF=0.016;AN=2;BaseQRankSum=3.85;DP=1582404;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=-0.001;QD=28.54;ReadPosRankSum=1.94;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92815	NC_020431.seq__92815	A	C	279962	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.62;DP=1582477;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.191;QD=30.34;ReadPosRankSum=0.343;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	92870	NC_020431.seq__92870	C	G	190705	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.493;DP=1582268;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0014;MLEAC=1;MLEAF=0.001309;MQ=59.96;MQRankSum=-0.085;QD=31.12;ReadPosRankSum=4.09;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	93243	NC_020431.seq__93243	T	G	216855	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.56;DP=1582189;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.52;ReadPosRankSum=1.15;SOR=0.541	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	93544	NC_020431.seq__93544	C	T	2631910	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-1.473;DP=1586004;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=-0.002;QD=27.76;ReadPosRankSum=0.588;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020431.seq	93629	NC_020431.seq__93629	G	A	3112340	.	AC=2;AF=0.034;AN=2;BaseQRankSum=1.3;DP=1594569;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=-0.051;QD=30.83;ReadPosRankSum=0.704;SOR=0.669	GT:AD:DP:GQ:PL	"1/1:65,3324:3389:99:125023,7562,0"
NC_020431.seq	93932	NC_020431.seq__93932	T	G	224002	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.38;DP=1592005;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=1.76;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020431.seq	94313	NC_020431.seq__94313	A	C	1911210	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.57;DP=1599741;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=-0.003;QD=25.98;ReadPosRankSum=0.756;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020431.seq	94398	NC_020431.seq__94398	A	C	450410	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.96;DP=1598629;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=13.87;QD=30.28;ReadPosRankSum=1.66;SOR=0.531	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020431.seq	94631	NC_020431.seq__94631	A	C	225360	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.42;DP=1598567;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.124;QD=33.22;ReadPosRankSum=-0.297;SOR=0.625	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020431.seq	95051	NC_020431.seq__95051	A	C	297844	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.76;DP=1598923;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.184;QD=30.28;ReadPosRankSum=-0.806;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020431.seq	95199	NC_020431.seq__95199	C	T	74969100	.	AC=2;AF=1;AN=2;BaseQRankSum=0.353;DP=1917255;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=-0.017;QD=33.34;ReadPosRankSum=1.16;SOR=0.799	GT:AD:DP:GQ:PL	"1/1:0,3318:3318:99:124285,9962,0"
NC_020431.seq	95260	NC_020431.seq__95260	C	T	574897	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.23;DP=1743311;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.01;QD=27.4;ReadPosRankSum=0.881;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020431.seq	95343	NC_020431.seq__95343	A	G	473454	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.81;DP=1740130;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.015;QD=32.42;ReadPosRankSum=-0.41;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020431.seq	95973	NC_020431.seq__95973	A	C	913300	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.327;DP=1738933;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=-0.03;QD=28.4;ReadPosRankSum=0.55;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020431.seq	96050	NC_020431.seq__96050	T	G	296131	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.76;DP=1737531;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.002;QD=27.64;ReadPosRankSum=0.939;SOR=0.358	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020431.seq	96327	NC_020431.seq__96327	G	T	42699100	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.651;DP=1760915;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=-0.002;QD=24.4;ReadPosRankSum=0.479;SOR=0.624	GT:AD:DP:GQ:PL	"1/1:43,3021:3066:99:113576,7636,0"
NC_020431.seq	96335	NC_020431.seq__96335	T	G	293854	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.59;DP=1524913;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.012;QD=28.13;ReadPosRankSum=1.67;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	97165	NC_020431.seq__97165	T	G	1398.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-0.151;DP=1523910;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0;QD=0.31;ReadPosRankSum=2.02;SOR=0.626	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	97360	NC_020431.seq__97360	A	C	216598	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.21;DP=1520180;ExcessHet=0;FS=2.094;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=7.73;QD=33.35;ReadPosRankSum=0.561;SOR=0.437	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	97690	NC_020431.seq__97690	A	C	314196	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.703;DP=1519253;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=28.05;ReadPosRankSum=1.46;SOR=0.504	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	97703	NC_020431.seq__97703	C	A	79146	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.957;DP=1517993;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.87;ReadPosRankSum=1.95;SOR=0.429	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	97704	NC_020431.seq__97704	T	G	80554	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.67;DP=1517989;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=1.63;SOR=0.393	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020431.seq	98073	NC_020431.seq__98073	T	G	1254240	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.67;DP=1404106;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.004;QD=29.35;ReadPosRankSum=0.599;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98171	NC_020431.seq__98171	A	C	464852	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.11;DP=1403312;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=4.37;QD=28.96;ReadPosRankSum=0.974;SOR=0.436	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98215	NC_020431.seq__98215	A	C	640629	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.692;DP=1407561;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.22;ReadPosRankSum=0;SOR=0.707	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98246	NC_020431.seq__98246	T	G	5536370	.	AC=0;AF=0.088;AN=2;BaseQRankSum=0.544;DP=1452490;ExcessHet=-0;FS=0;InbreedingCoeff=0.9844;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=25.27;ReadPosRankSum=-0.172;SOR=0.62	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98362	NC_020431.seq__98362	A	C	243874	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.158;DP=1428002;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.049;QD=29.55;ReadPosRankSum=-1.036;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98499	NC_020431.seq__98499	C	A	206063	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.3;DP=1427547;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=1.03;QD=33.57;ReadPosRankSum=17.91;SOR=0.618	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98500	NC_020431.seq__98500	C	T	210216	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-2.889;DP=1427519;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=1.04;QD=34.48;ReadPosRankSum=18.01;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98501	NC_020431.seq__98501	G	T	198927	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-1.73;DP=1427540;ExcessHet=3.0103;FS=1.041;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=2.31;QD=32.66;ReadPosRankSum=18.05;SOR=0.59	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	98507	NC_020431.seq__98507	C	A	205660	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=0.512;DP=1427540;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=2.39;QD=33.52;ReadPosRankSum=17.33;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	99234	NC_020431.seq__99234	C	T	530820	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.26;DP=1431663;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.044;QD=23.12;ReadPosRankSum=-0.184;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	100416	NC_020431.seq__100416	G	A	439314	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.642;DP=1436315;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.061;QD=34.76;ReadPosRankSum=-0.082;SOR=0.775	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	101133	NC_020431.seq__101133	A	C	612449	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=5.8;DP=1436902;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=24.16;ReadPosRankSum=0.407;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	101380	NC_020431.seq__101380	G	A	3160470	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-1.91;DP=1440518;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=-0.016;QD=31.24;ReadPosRankSum=0.887;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020431.seq	101429	NC_020431.seq__101429	C	T	12027200	.	AC=2;AF=0.165;AN=2;BaseQRankSum=-2.537;DP=1534872;ExcessHet=-0;FS=0;InbreedingCoeff=0.981;MLEAC=126;MLEAF=0.165;MQ=60;MQRankSum=0;QD=28.66;ReadPosRankSum=2.03;SOR=0.624	GT:AD:DP:GQ:PL	"1/1:122,2713:2835:99:97085,3345,0"
NC_020431.seq	101508	NC_020431.seq__101508	A	C	530664	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.29;DP=1503893;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.062;QD=33.55;ReadPosRankSum=1.35;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:2591,0:2591:99:0,120,1800"
NC_020431.seq	102011	NC_020431.seq__102011	G	A	237004	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.328;DP=1506896;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=9.58;QD=27.84;ReadPosRankSum=0.131;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:2591,0:2591:99:0,120,1800"
NC_020431.seq	102210	NC_020431.seq__102210	T	G	9583890	.	AC=0;AF=0.186;AN=2;BaseQRankSum=1.41;DP=1553138;ExcessHet=-0;FS=0;InbreedingCoeff=0.9957;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=26.26;ReadPosRankSum=1.13;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020431.seq	102474	NC_020431.seq__102474	C	T	1305840	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.085;DP=1527852;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=-0.036;QD=22.5;ReadPosRankSum=0.221;SOR=0.58	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020431.seq	102567	NC_020431.seq__102567	T	G	277784	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.36;DP=1526685;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.017;QD=33.81;ReadPosRankSum=0.335;SOR=0.562	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020431.seq	102574	NC_020431.seq__102574	T	G	261854	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.52;DP=1525638;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.097;QD=36.56;ReadPosRankSum=0.451;SOR=0.642	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020431.seq	102899	NC_020431.seq__102899	T	C	12873600	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.217;DP=1578649;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=-0.002;QD=24.46;ReadPosRankSum=0.216;SOR=0.693	GT:AD:DP:GQ:PL	"1/1:59,2683:2742:99:100298,5907,0"
NC_020431.seq	103911	NC_020431.seq__103911	T	G	212272	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=6.03;DP=1507296;ExcessHet=0.0028;FS=1.08;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.007;QD=34.57;ReadPosRankSum=-0.626;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:2128,0:2128:99:0,120,1800"
NC_020431.seq	105483	NC_020431.seq__105483	A	C	310590	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.82;DP=1507734;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=26.18;ReadPosRankSum=0.109;SOR=0.68	GT:AD:DP:GQ:PL	"0/0:2128,0:2128:99:0,120,1800"
NC_020431.seq	105694	NC_020431.seq__105694	T	C	1628130	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.44;DP=1485783;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=-0.006;QD=28.71;ReadPosRankSum=2.56;SOR=0.73	GT:AD:DP:GQ:PL	"0/0:2161,0:2161:99:0,120,1800"
NC_020431.seq	105738	NC_020431.seq__105738	T	G	592219	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.3;DP=1332440;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=33.2;ReadPosRankSum=0.998;SOR=0.779	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	105988	NC_020431.seq__105988	A	C	234496	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.533;DP=1333938;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.033;QD=26.88;ReadPosRankSum=0.213;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106425	NC_020431.seq__106425	A	C	486955	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.29;DP=1342906;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=3.44;QD=31.54;ReadPosRankSum=1.12;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106483	NC_020431.seq__106483	G	T	232415	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.73;DP=1342250;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.033;QD=32.32;ReadPosRankSum=0.365;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106499	NC_020431.seq__106499	T	A	100457	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.46;DP=1342419;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.73;ReadPosRankSum=-0.179;SOR=0.352	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106544	NC_020431.seq__106544	T	A	1132470	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.76;DP=1351894;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=27.39;ReadPosRankSum=1.42;SOR=0.628	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106545	NC_020431.seq__106545	T	A	1139160	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.18;DP=1351557;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.94;ReadPosRankSum=1.42;SOR=0.604	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106546	NC_020431.seq__106546	T	A	1135110	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.2;DP=1351455;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.62;ReadPosRankSum=1.28;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1800,0:1800:99:0,120,1800"
NC_020431.seq	106585	NC_020431.seq__106585	A	G	42177900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.693;DP=1729127;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=-0.001;QD=29.21;ReadPosRankSum=0.154;SOR=0.626	GT:AD:DP:GQ:PL	"1/1:14,3008:3022:99:114849,8548,0"
NC_020431.seq	106759	NC_020431.seq__106759	A	C	566292	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.834;DP=1556795;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.011;QD=27.37;ReadPosRankSum=1.98;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	106895	NC_020431.seq__106895	A	C	238432	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.77;DP=1554337;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.001;QD=29.23;ReadPosRankSum=-0.702;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	107017	NC_020431.seq__107017	G	A	3326660	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.538;DP=1561563;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=-0.141;QD=30.6;ReadPosRankSum=0.342;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	107119	NC_020431.seq__107119	C	G	1228690	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.283;DP=1546737;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.03;QD=29.69;ReadPosRankSum=-0.067;SOR=0.513	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	107822	NC_020431.seq__107822	T	G	1876910	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.53;DP=1544191;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=-0.003;QD=29.88;ReadPosRankSum=0.01;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	108130	NC_020431.seq__108130	G	A	2931230	.	AC=0;AF=0.05;AN=2;BaseQRankSum=0.676;DP=1538587;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=38;MLEAF=0.05;MQ=60;MQRankSum=0;QD=31.95;ReadPosRankSum=-0.242;SOR=0.639	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	108173	NC_020431.seq__108173	A	C	227305	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.52;DP=1528149;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-2.08;QD=27.27;ReadPosRankSum=0.232;SOR=0.532	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	108225	NC_020431.seq__108225	G	A	240437	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=1.8;DP=1527969;ExcessHet=0.0001;FS=11.538;InbreedingCoeff=0.7974;MLEAC=5;MLEAF=0.006545;MQ=59.99;MQRankSum=-0.002;QD=26.6;ReadPosRankSum=-0.636;SOR=0.26	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020431.seq	108247	NC_020431.seq__108247	C	T	24674700	.	AC=2;AF=0.53;AN=2;BaseQRankSum=0.103;DP=1082764;ExcessHet=-0;FS=0;InbreedingCoeff=0.5707;MLEAC=462;MLEAF=0.605;MQ=60;MQRankSum=0;QD=26.31;ReadPosRankSum=-0.116;SOR=0.771	GT:AD:DP:GQ:PL	"1/1:6,1584:1590:99:70794,4605,0"
NC_020431.seq	108255	NC_020431.seq__108255	C	G	5760900	.	AC=2;AF=0.123;AN=2;BaseQRankSum=-0.015;DP=1097536;ExcessHet=0.0022;FS=0;InbreedingCoeff=0.3669;MLEAC=111;MLEAF=0.145;MQ=60;MQRankSum=0;QD=29.88;ReadPosRankSum=-0.156;SOR=0.722	GT:AD:DP:GQ:PL	"1/1:22,1547:1571:99:56749,3793,0"
NC_020431.seq	108269	NC_020431.seq__108269	G	A	924964	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.53;DP=1069721;ExcessHet=1.3261;FS=0;InbreedingCoeff=0.1709;MLEAC=15;MLEAF=0.02;MQ=60;MQRankSum=0;QD=28.73;ReadPosRankSum=0.023;SOR=0.762	GT:AD:DP:GQ:PL	"0/0:1700,0:1700:0:0,0,51493"
NC_020431.seq	108333	NC_020431.seq__108333	A	G	359029	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.75;DP=1052152;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.077;QD=30.37;ReadPosRankSum=0.425;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108337	NC_020431.seq__108337	T	G	92320	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.124;DP=1052128;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.14;ReadPosRankSum=-0.814;SOR=0.602	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108369	NC_020431.seq__108369	T	C	159469	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.768;DP=1052302;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.017;QD=34.69;ReadPosRankSum=-0.101;SOR=0.758	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108419	NC_020431.seq__108419	A	C	795612	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.08;DP=1055154;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.48;ReadPosRankSum=-0.759;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108439	NC_020431.seq__108439	T	G	595753	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.24;DP=1052905;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=5.24;QD=31.17;ReadPosRankSum=-0.835;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108459	NC_020431.seq__108459	T	A	93996	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.711;DP=1053283;ExcessHet=0.0028;FS=1.658;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.55;ReadPosRankSum=0.172;SOR=0.402	GT:AD:DP:GQ:PL	"0/0:1594,0:1594:99:0,120,1800"
NC_020431.seq	108479	NC_020431.seq__108479	G	A	28008900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.525;DP=1136230;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=25.11;ReadPosRankSum=-0.011;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:10,1727:1737:99:64212,4804,0"
NC_020431.seq	108523	NC_020431.seq__108523	C	T	1201210	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.71;DP=1126751;ExcessHet=0;FS=0;InbreedingCoeff=0.9978;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.61;ReadPosRankSum=-0.257;SOR=0.708	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	108529	NC_020431.seq__108529	A	C	1008050	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.51;DP=1126759;ExcessHet=0;FS=0;InbreedingCoeff=0.9957;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=0.272;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	108542	NC_020431.seq__108542	G	A	1160550	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.221;DP=1124358;ExcessHet=0;FS=0;InbreedingCoeff=0.995;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=-0.463;SOR=0.616	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	108551	NC_020431.seq__108551	C	A	165159	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.992;DP=1123533;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9469;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.41;ReadPosRankSum=2.78;SOR=0.584	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	108617	NC_020431.seq__108617	T	C	166690	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.403;DP=1123659;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=-1.651;SOR=0.883	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	108634	NC_020431.seq__108634	G	T	8577310	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.323;DP=1126952;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=27.5;ReadPosRankSum=0.014;SOR=0.652	GT:AD:DP:GQ:PL	"1/1:43,1659:1702:99:61048,3512,0"
NC_020431.seq	108642	NC_020431.seq__108642	T	G	141357	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.01;DP=1118472;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.84;ReadPosRankSum=0.281;SOR=0.633	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108718	NC_020431.seq__108718	C	T	358907	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.516;DP=1118406;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.66;ReadPosRankSum=-0.779;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108739	NC_020431.seq__108739	C	T	77146	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.211;DP=1119261;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.26;ReadPosRankSum=1.09;SOR=0.549	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108770	NC_020431.seq__108770	G	A	216475	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.88;DP=1119006;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.065;QD=27.67;ReadPosRankSum=-1.087;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108794	NC_020431.seq__108794	C	T	121296	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.82;DP=1119176;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.7993;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.92;ReadPosRankSum=-0.552;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108803	NC_020431.seq__108803	G	A	104473	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.1;DP=1119103;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.56;ReadPosRankSum=1.15;SOR=0.447	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108830	NC_020431.seq__108830	C	T	1012380	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.225;DP=1119948;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=34.08;ReadPosRankSum=0.59;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108835	NC_020431.seq__108835	T	G	326931	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.85;DP=1119436;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=26.34;ReadPosRankSum=0.742;SOR=0.7	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108868	NC_020431.seq__108868	T	C	290415	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.613;DP=1119414;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=27.74;ReadPosRankSum=0.8;SOR=0.419	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108897	NC_020431.seq__108897	T	G	171754	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.492;DP=1119615;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.037;QD=30.46;ReadPosRankSum=0.701;SOR=0.558	GT:AD:DP:GQ:PL	"0/0:1671,0:1671:99:0,120,1800"
NC_020431.seq	108920	NC_020431.seq__108920	G	C	28087400	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.329;DP=1138789;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=26.77;ReadPosRankSum=-0.046;SOR=0.671	GT:AD:DP:GQ:PL	"1/1:8,1731:1740:99:64763,4934,0"
NC_020431.seq	108962	NC_020431.seq__108962	G	A	28131900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.027;DP=1139235;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=28.19;ReadPosRankSum=0.128;SOR=0.658	GT:AD:DP:GQ:PL	"1/1:10,1794:1804:99:66482,5033,0"
NC_020431.seq	108977	NC_020431.seq__108977	C	T	211316	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.31;DP=1080315;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.061;QD=31.91;ReadPosRankSum=-0.796;SOR=0.832	GT:AD:DP:GQ:PL	"0/0:1708,0:1708:99:0,120,1800"
NC_020431.seq	108978	NC_020431.seq__108978	T	C	165162	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.25;DP=1079563;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.023;QD=30.97;ReadPosRankSum=0.226;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1708,0:1708:99:0,120,1800"
NC_020431.seq	109026	NC_020431.seq__109026	T	G	685374	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.099;DP=1079749;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=25.05;ReadPosRankSum=0.646;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1708,0:1708:99:0,120,1800"
NC_020431.seq	109052	NC_020431.seq__109052	G	A	3312280	.	AC=0;AF=0.089;AN=2;BaseQRankSum=0.34;DP=1078063;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=26.43;ReadPosRankSum=-0.234;SOR=0.649	GT:AD:DP:GQ:PL	"0/0:1708,0:1708:99:0,120,1800"
NC_020431.seq	109073	NC_020431.seq__109073	G	A	2172760	.	AC=2;AF=0.034;AN=2;BaseQRankSum=-0.948;DP=1070340;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=26;MLEAF=0.034;MQ=60;MQRankSum=0;QD=32.4;ReadPosRankSum=-0.079;SOR=0.731	GT:AD:DP:GQ:PL	"1/1:27,1688:1715:99:61441,4053,0"
NC_020431.seq	109217	NC_020431.seq__109217	A	"C,*"	202288	.	"AC=0,0;AF=0.002618,0.001309;AN=2;BaseQRankSum=2.79;DP=1063271;ExcessHet=0.0085;FS=2.081;InbreedingCoeff=0.6651;MLEAC=2,1;MLEAF=0.002618,0.001309;MQ=53.25;MQRankSum=5.34;QD=34.91;ReadPosRankSum=0.823;SOR=0.601"	GT:AD:DP:GQ:PL	"0/0:1395,0,0:1395:99:0,120,1800,120,1800,1800"
NC_020431.seq	109238	NC_020431.seq__109238	G	"A,*"	348939	.	"AC=0,0;AF=0.016,0.001309;AN=2;BaseQRankSum=1.16;DP=1063035;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=12,1;MLEAF=0.016,0.001309;MQ=55.79;MQRankSum=0;QD=30.07;ReadPosRankSum=-0.447;SOR=0.533"	GT:AD:DP:GQ:PL	"0/0:1395,0,0:1395:99:0,120,1800,120,1800,1800"
NC_020431.seq	109282	NC_020431.seq__109282	T	C	132070	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.744;DP=1062385;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.08;QD=29.07;ReadPosRankSum=1.28;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1395,0:1395:99:0,120,1800"
NC_020431.seq	109324	NC_020431.seq__109324	A	C	9516940	.	AC=0;AF=0.188;AN=2;BaseQRankSum=0.642;DP=1067272;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=144;MLEAF=0.188;MQ=60;MQRankSum=0;QD=28.93;ReadPosRankSum=0.115;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1395,0:1395:99:0,120,1800"
NC_020431.seq	109414	NC_020431.seq__109414	T	C	155225	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=5.84;DP=1048478;ExcessHet=0.0028;FS=3.542;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.54;ReadPosRankSum=0.06;SOR=0.468	GT:AD:DP:GQ:PL	"0/0:1395,0:1395:99:0,120,1800"
NC_020431.seq	109441	NC_020431.seq__109441	A	G	153293	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.96;DP=1048496;ExcessHet=0.0028;FS=1.697;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.14;ReadPosRankSum=-1.482;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1395,0:1395:99:0,120,1800"
NC_020431.seq	109567	NC_020431.seq__109567	G	"C,A"	24889000	.	"AC=2,0;AF=0.537,0.002618;AN=2;BaseQRankSum=0.249;DP=1047078;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410,2;MLEAF=0.537,0.002618;MQ=60;MQRankSum=0;QD=33.88;ReadPosRankSum=0.001;SOR=0.839"	GT:AD:DP:GQ:PL	"1/1:9,1380,0:1389:99:52649,3799,0,52676,4148,53025"
NC_020431.seq	109577	NC_020431.seq__109577	G	A	86500	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.038;DP=1048444;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.31;ReadPosRankSum=-0.406;SOR=0.723	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109625	NC_020431.seq__109625	G	A	835543	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.103;DP=1048984;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.98;ReadPosRankSum=0.052;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109736	NC_020431.seq__109736	C	T	237817	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.95;DP=1049315;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.3;ReadPosRankSum=1.42;SOR=0.57	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109770	NC_020431.seq__109770	T	G	936000	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.58;DP=1050765;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=35.08;ReadPosRankSum=0.711;SOR=0.671	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109787	NC_020431.seq__109787	T	G	807274	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.45;DP=1052227;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.87;ReadPosRankSum=-0.016;SOR=0.567	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109907	NC_020431.seq__109907	T	C	178671	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.764;DP=1052794;ExcessHet=0.0028;FS=1.613;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.49;ReadPosRankSum=0.554;SOR=0.443	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	109919	NC_020431.seq__109919	C	T	178275	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.21;DP=1052795;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.012;QD=33.78;ReadPosRankSum=0.761;SOR=0.494	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	110003	NC_020431.seq__110003	A	C	617802	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.51;DP=1054095;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=25.32;ReadPosRankSum=0.93;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	110052	NC_020431.seq__110052	C	T	305575	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.84;DP=1055645;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.52;ReadPosRankSum=1.24;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1394,0:1394:99:0,120,1800"
NC_020431.seq	110069	NC_020431.seq__110069	G	A	27505700	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.132;DP=1131199;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=0.135;SOR=0.678	GT:AD:DP:GQ:PL	"1/1:10,1746:1756:99:65523,4890,0"
NC_020431.seq	110104	NC_020431.seq__110104	T	C	92291	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.76;DP=1117460;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.26;ReadPosRankSum=-0.466;SOR=0.558	GT:AD:DP:GQ:PL	"0/0:1708,0:1708:99:0,120,1800"
NC_020431.seq	110165	NC_020431.seq__110165	G	A	8329830	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.224;DP=1118280;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=28.42;ReadPosRankSum=0.291;SOR=0.689	GT:AD:DP:GQ:PL	"1/1:32,1682:1714:99:62192,3889,0"
NC_020431.seq	110266	NC_020431.seq__110266	T	C	313984	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.566;DP=1115660;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.024;QD=30.44;ReadPosRankSum=0.558;SOR=0.824	GT:AD:DP:GQ:PL	"0/0:1682,0:1682:99:0,120,1800"
NC_020431.seq	110282	NC_020431.seq__110282	T	G	554769	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.89;DP=1116057;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=34.74;ReadPosRankSum=1.11;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1682,0:1682:99:0,120,1800"
NC_020431.seq	110356	NC_020431.seq__110356	T	G	642642	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.036;DP=1116587;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=-0.016;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1682,0:1682:99:0,120,1800"
NC_020431.seq	110479	NC_020431.seq__110479	C	T	579382	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.521;DP=1116158;ExcessHet=0;FS=0;InbreedingCoeff=0.9974;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=-1.182;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1682,0:1682:99:0,120,1800"
NC_020431.seq	110561	NC_020431.seq__110561	C	"*,T"	513113	.	"AC=0,0;AF=0.005249,0.002625;AN=2;BaseQRankSum=1.5;DP=1112250;ExcessHet=0;FS=0;InbreedingCoeff=0.947;MLEAC=4,2;MLEAF=0.005249,0.002625;MQ=28.07;MQRankSum=-0.185;QD=32.83;ReadPosRankSum=-0.703;SOR=0.942"	GT:AD:DP:GQ:PL	"0/0:1689,0,0:1689:99:0,120,1800,120,1800,1800"
NC_020431.seq	110565	NC_020431.seq__110565	C	T	133607	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.1;DP=1111853;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.251;QD=34.66;ReadPosRankSum=3.56;SOR=0.93	GT:AD:DP:GQ:PL	"0/0:1689,0:1689:99:0,120,1800"
NC_020431.seq	110566	NC_020431.seq__110566	T	G	929076	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.089;DP=1115430;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.34;ReadPosRankSum=2.13;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1689,0:1689:99:0,120,1800"
NC_020431.seq	110570	NC_020431.seq__110570	C	T	32351000	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.332;DP=1157603;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=23.5;ReadPosRankSum=-0.07;SOR=0.753	GT:AD:DP:GQ:PL	"1/1:12,1779:1791:99:79116,4945,0"
NC_020431.seq	110614	NC_020431.seq__110614	G	T	433578	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.35;DP=1144152;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.006;QD=32.9;ReadPosRankSum=1.69;SOR=0.479	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	110646	NC_020431.seq__110646	T	G	323992	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.487;DP=1144562;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.96;ReadPosRankSum=0.813;SOR=0.493	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	110647	NC_020431.seq__110647	G	A	275824	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.25;DP=1144395;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.023;QD=36.3;ReadPosRankSum=0.032;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	110657	NC_020431.seq__110657	C	A	434016	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.72;DP=1144202;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.735;QD=26.66;ReadPosRankSum=2.86;SOR=0.587	GT:AD:DP:GQ:PL	"0/0:1785,0:1785:99:0,120,1800"
NC_020431.seq	110704	NC_020431.seq__110704	T	C	19793700	.	AC=2;AF=0.935;AN=2;BaseQRankSum=-0.026;DP=1192716;ExcessHet=0;FS=0;InbreedingCoeff=0.6495;MLEAC=414;MLEAF=0.967;MQ=47.22;MQRankSum=0;QD=30.94;ReadPosRankSum=0.193;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:8,1612:1620:99:48842,4697,0"
NC_020431.seq	110706	NC_020431.seq__110706	T	C	11186300	.	AC=0;AF=0.44;AN=2;BaseQRankSum=0.171;DP=1193916;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=336;MLEAF=0.44;MQ=60;MQRankSum=0;QD=28.65;ReadPosRankSum=0.483;SOR=0.734	GT:AD:DP:GQ:PL	"0/0:1819,0:1819:99:0,120,1800"
NC_020431.seq	110707	NC_020431.seq__110707	T	C	19924900	.	AC=2;AF=0.524;AN=2;BaseQRankSum=0.442;DP=1179813;ExcessHet=-0;FS=0;InbreedingCoeff=0.7452;MLEAC=427;MLEAF=0.559;MQ=60;MQRankSum=0;QD=30.47;ReadPosRankSum=0.519;SOR=0.718	GT:AD:DP:GQ:PL	"1/1:9,1637:1647:99:49064,4720,0"
NC_020431.seq	110727	NC_020431.seq__110727	A	C	165081	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.005;DP=1159538;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.026;QD=29.53;ReadPosRankSum=-0.427;SOR=0.603	GT:AD:DP:GQ:PL	"0/0:1749,0:1749:99:0,120,1800"
NC_020431.seq	110744	NC_020431.seq__110744	C	T	345870	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.38;DP=1159271;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=33.36;ReadPosRankSum=0.545;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1749,0:1749:99:0,120,1800"
NC_020431.seq	110750	NC_020431.seq__110750	C	T	193220	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.243;DP=1159116;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9992;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.019;QD=30.77;ReadPosRankSum=1.55;SOR=0.625	GT:AD:DP:GQ:PL	"0/0:1749,0:1749:99:0,120,1800"
NC_020431.seq	110770	NC_020431.seq__110770	T	G	155236	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.42;DP=1157297;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.48;ReadPosRankSum=0.933;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1749,0:1749:99:0,120,1800"
NC_020431.seq	110772	NC_020431.seq__110772	A	C	1653540	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.697;DP=1158554;ExcessHet=-0;FS=0;InbreedingCoeff=0.9993;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=31.49;ReadPosRankSum=1.16;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:90:0,90,1350"
NC_020431.seq	110797	NC_020431.seq__110797	G	A	5175270	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.772;DP=1135926;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=34.09;ReadPosRankSum=0.171;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110798	NC_020431.seq__110798	C	G	973432	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-0.709;DP=1129724;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=0.748;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110843	NC_020431.seq__110843	A	C	104658	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.27;DP=1128294;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.71;ReadPosRankSum=-1.457;SOR=0.732	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110933	NC_020431.seq__110933	A	G	2058500	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.36;DP=1130903;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0.022;QD=32.74;ReadPosRankSum=0.148;SOR=0.709	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110935	NC_020431.seq__110935	G	A	647558	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.839;DP=1129773;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=9.37;QD=37.69;ReadPosRankSum=0.065;SOR=0.787	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110974	NC_020431.seq__110974	G	A	166481	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.674;DP=1129247;ExcessHet=0.0028;FS=1.706;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.025;QD=29.8;ReadPosRankSum=2.33;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	110998	NC_020431.seq__110998	A	C	310550	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.81;DP=1129357;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=23.1;ReadPosRankSum=1.69;SOR=0.646	GT:AD:DP:GQ:PL	"0/0:1620,0:1620:99:0,120,1800"
NC_020431.seq	111016	NC_020431.seq__111016	A	G	8032490	.	AC=2;AF=0.168;AN=2;BaseQRankSum=-0.059;DP=1131147;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=32.32;ReadPosRankSum=0.068;SOR=0.731	GT:AD:DP:GQ:PL	"1/1:34,1560:1595:99:57692,3439,0"
NC_020431.seq	111060	NC_020431.seq__111060	G	A	310440	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.76;DP=1128158;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.63;ReadPosRankSum=0.247;SOR=0.729	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	111083	NC_020431.seq__111083	C	T	206314	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.273;DP=1128408;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.94;ReadPosRankSum=-0.915;SOR=0.516	GT:AD:DP:GQ:PL	"0/0:1622,0:1622:99:0,120,1800"
NC_020431.seq	111239	NC_020431.seq__111239	T	G	26973900	.	AC=2;AF=0.531;AN=2;BaseQRankSum=0.694;DP=1129576;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=29.55;ReadPosRankSum=0.311;SOR=0.696	GT:AD:DP:GQ:PL	"1/1:17,1675:1692:99:63149,4548,0"
NC_020431.seq	111240	NC_020431.seq__111240	A	C	104846	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.16;DP=1140281;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.32;ReadPosRankSum=-1.309;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	111248	NC_020431.seq__111248	G	C	360145	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.108;DP=1140150;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.43;ReadPosRankSum=0.902;SOR=0.718	GT:AD:DP:GQ:PL	"0/0:1713,0:1713:99:0,120,1800"
NC_020431.seq	111290	NC_020431.seq__111290	T	C	31288900	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.229;DP=1135109;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=24.89;ReadPosRankSum=0.131;SOR=0.664	GT:AD:DP:GQ:PGT:PID:PL	"1/1:7,1703:1710:99:1|1:111290_T_C:76035,4830,0"
NC_020431.seq	111292	NC_020431.seq__111292	T	A	181808	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.099;DP=1143804;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=36.52;ReadPosRankSum=0.789;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1745,0:1745:99:0,120,1800"
NC_020431.seq	111316	NC_020431.seq__111316	C	T	5011300	.	AC=0;AF=0.186;AN=2;BaseQRankSum=0.716;DP=1130769;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=28.57;ReadPosRankSum=0.165;SOR=0.674	GT:AD:DP:GQ:PL	"0/0:1738,0:1738:99:0,120,1800"
NC_020431.seq	111325	NC_020431.seq__111325	C	A	423567	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.22;DP=1119510;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.003;QD=31.95;ReadPosRankSum=0.8;SOR=0.494	GT:AD:DP:GQ:PL	"0/0:1738,0:1738:99:0,120,1800"
NC_020431.seq	111334	NC_020431.seq__111334	T	G	105850	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.357;DP=1119517;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.92;ReadPosRankSum=0.701;SOR=0.379	GT:AD:DP:GQ:PL	"0/0:1738,0:1738:99:0,120,1800"
NC_020431.seq	111335	NC_020431.seq__111335	A	C	9775470	.	AC=2;AF=0.212;AN=2;BaseQRankSum=0.345;DP=1121448;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=162;MLEAF=0.212;MQ=60;MQRankSum=0;QD=29.06;ReadPosRankSum=0.082;SOR=0.61	GT:AD:DP:GQ:PL	"1/1:44,1726:1770:99:62597,3756,0"
NC_020431.seq	111342	NC_020431.seq__111342	A	C	275636	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.03;DP=1118903;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=25.63;ReadPosRankSum=0.605;SOR=0.525	GT:AD:DP:GQ:PL	"0/0:1769,0:1769:99:0,120,1800"
NC_020431.seq	111355	NC_020431.seq__111355	T	G	304161	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.25;DP=1118780;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.022;QD=29.61;ReadPosRankSum=-0.006;SOR=0.464	GT:AD:DP:GQ:PL	"0/0:1769,0:1769:99:0,120,1800"
NC_020431.seq	111416	NC_020431.seq__111416	T	A	343682	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=-0.338;DP=1118575;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6653;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0.118;QD=32.75;ReadPosRankSum=0.127;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1769,0:1769:99:0,120,1800"
NC_020431.seq	111442	NC_020431.seq__111442	T	G	26475000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.43;DP=1123369;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.98;ReadPosRankSum=0.371;SOR=0.677	GT:AD:DP:GQ:PL	"1/1:13,1734:1747:99:63705,4831,0"
NC_020431.seq	111472	NC_020431.seq__111472	G	A	308100	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.2;DP=1122698;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.023;QD=32.47;ReadPosRankSum=0.683;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1656,0:1656:99:0,120,1800"
NC_020431.seq	111493	NC_020431.seq__111493	G	"T,A"	26914000	.	"AC=2,0;AF=0.534,0.002618;AN=2;BaseQRankSum=0.498;DP=1122885;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=408,2;MLEAF=0.534,0.002618;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=-0.017;SOR=0.646"	GT:AD:DP:GQ:PL	"1/1:11,1618,0:1629:99:60142,4442,0,60175,4868,60600"
NC_020431.seq	111518	NC_020431.seq__111518	A	G	260379	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.87;DP=1126058;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=0.489;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1599,0:1599:99:0,120,1800"
NC_020431.seq	111521	NC_020431.seq__111521	G	A	532766	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=1.16;DP=1126292;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.798;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=-0.048;QD=31.66;ReadPosRankSum=-0.111;SOR=0.502	GT:AD:DP:GQ:PL	"0/0:1599,0:1599:99:0,120,1800"
NC_020431.seq	111528	NC_020431.seq__111528	T	A	289949	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.8;DP=1126177;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.87;ReadPosRankSum=0.843;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1599,0:1599:99:0,120,1800"
NC_020431.seq	111529	NC_020431.seq__111529	T	A	27213900	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.03;DP=1118330;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=29.04;ReadPosRankSum=0.182;SOR=0.745	GT:AD:DP:GQ:PL	"1/1:11,1564:1575:99:58157,4274,0"
NC_020431.seq	111552	NC_020431.seq__111552	C	T	158077	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.417;DP=1054472;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.15;ReadPosRankSum=-1.196;SOR=0.269	GT:AD:DP:GQ:PL	"0/0:1460,0:1460:99:0,120,1800"
NC_020431.seq	111582	NC_020431.seq__111582	C	G	314738	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.63;DP=1054367;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.031;QD=37.95;ReadPosRankSum=1.02;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:1460,0:1460:99:0,120,1800"
NC_020431.seq	111608	NC_020431.seq__111608	A	C	414797	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.3;DP=1053617;ExcessHet=0;FS=3.235;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.33;ReadPosRankSum=1.74;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1460,0:1460:99:0,120,1800"
NC_020431.seq	111634	NC_020431.seq__111634	G	T	1980620	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.552;DP=1052051;ExcessHet=-0;FS=0;InbreedingCoeff=0.9818;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.94;ReadPosRankSum=1.37;SOR=0.74	GT:AD:DP:GQ:PL	"0/0:1460,0:1460:99:0,120,1800"
NC_020431.seq	111682	NC_020431.seq__111682	T	G	22556800	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.644;DP=953110;ExcessHet=0;FS=0;InbreedingCoeff=0.9989;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.29;ReadPosRankSum=0.257;SOR=0.75	GT:AD:DP:GQ:PL	"1/1:9,1325:1334:99:50102,3689,0"
NC_020431.seq	111811	NC_020431.seq__111811	G	A	5047890	.	AC=0;AF=0.186;AN=2;BaseQRankSum=-0.213;DP=977506;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=28.91;ReadPosRankSum=0.259;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1334,0:1334:99:0,120,1800"
NC_020431.seq	111828	NC_020431.seq__111828	G	T	30989300	.	AC=2;AF=0.613;AN=2;BaseQRankSum=0.354;DP=1109690;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=468;MLEAF=0.613;MQ=60;MQRankSum=0;QD=30.74;ReadPosRankSum=0.025;SOR=0.693	GT:AD:DP:GQ:PL	"1/1:2,1597:1599:99:59993,4751,0"
NC_020431.seq	111829	NC_020431.seq__111829	A	C	387633	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.7;DP=1111307;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=56.91;MQRankSum=-0.006;QD=28.31;ReadPosRankSum=2.33;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1612,0:1612:99:0,120,1800"
NC_020431.seq	111922	NC_020431.seq__111922	G	A	194135	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.415;DP=1117351;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9085;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.14;QD=26.88;ReadPosRankSum=0.425;SOR=0.611	GT:AD:DP:GQ:PL	"0/0:1612,0:1612:99:0,120,1800"
NC_020431.seq	111974	NC_020431.seq__111974	C	T	1128470	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.794;DP=1118858;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=29.14;ReadPosRankSum=-0.116;SOR=0.495	GT:AD:DP:GQ:PL	"0/0:1612,0:1612:99:0,120,1800"
NC_020431.seq	111985	NC_020431.seq__111985	T	C	27600100	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.21;DP=1156308;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=28.7;ReadPosRankSum=0.171;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:5,1812:1822:99:66396,5254,0"
NC_020431.seq	112012	NC_020431.seq__112012	A	C	435246	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.83;DP=1146083;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=-0.007;QD=30.27;ReadPosRankSum=0.205;SOR=0.629	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	112016	NC_020431.seq__112016	G	A	338139	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.11;DP=1146019;ExcessHet=0;FS=2.081;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.54;ReadPosRankSum=-0.009;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	112033	NC_020431.seq__112033	C	T	186962	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.854;DP=1145891;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.143;QD=31.34;ReadPosRankSum=-0.888;SOR=0.624	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	112055	NC_020431.seq__112055	A	C	98526.1	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.547;DP=1145811;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.13;ReadPosRankSum=0.513;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	112207	NC_020431.seq__112207	T	C	339266	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.436;DP=1146017;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.31;ReadPosRankSum=0.054;SOR=0.789	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	112208	NC_020431.seq__112208	C	A	29093600	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.659;DP=1168655;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=27.54;ReadPosRankSum=-0.008;SOR=0.735	GT:AD:DP:GQ:PL	"1/1:8,1836:1844:99:68215,5191,0"
NC_020431.seq	112220	NC_020431.seq__112220	A	C	147969	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=2.86;DP=1147041;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=0.006;QD=33.77;ReadPosRankSum=-0.444;SOR=0.761	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112250	NC_020431.seq__112250	C	T	612404	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.246;DP=1147030;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.057;QD=27.29;ReadPosRankSum=0.211;SOR=0.52	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112259	NC_020431.seq__112259	G	A	188638	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.468;DP=1147130;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.06;QD=32.53;ReadPosRankSum=0.573;SOR=0.505	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112267	NC_020431.seq__112267	C	T	1124920	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.404;DP=1146923;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.093;QD=25.05;ReadPosRankSum=0.543;SOR=0.755	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112277	NC_020431.seq__112277	A	C	107259	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.35;DP=1147021;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.49;ReadPosRankSum=0.687;SOR=0.53	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112331	NC_020431.seq__112331	A	C	90962	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.11;DP=1146709;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.45;ReadPosRankSum=0.531;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112441	NC_020431.seq__112441	T	G	219764	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.28;DP=1146890;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.81;ReadPosRankSum=0.473;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112444	NC_020431.seq__112444	A	T	346386	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.129;DP=1147198;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.71;ReadPosRankSum=0.426;SOR=0.707	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112448	NC_020431.seq__112448	G	A	175206	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.25;DP=1147304;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.59;ReadPosRankSum=-2.583;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,120,1800"
NC_020431.seq	112527	NC_020431.seq__112527	T	"A,C"	46926900	.	"AC=0,2;AF=0.016,0.984;AN=2;BaseQRankSum=1.26;DP=1225445;ExcessHet=3.0103;FS=0;InbreedingCoeff=0;MLEAC=12,752;MLEAF=0.016,0.984;MQ=60;MQRankSum=0;QD=32.2;ReadPosRankSum=1.26;SOR=0.316"	GT:AD:DP:GQ:PL	"2/2:0,1,1639:1646:99:65480,68222,78386,5292,5359,0"
NC_020431.seq	112558	NC_020431.seq__112558	T	C	330493	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.45;DP=1139740;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.033;QD=29.11;ReadPosRankSum=-0.419;SOR=0.892	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	112734	NC_020431.seq__112734	C	T	278315	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=0.709;DP=1138881;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=31.39;ReadPosRankSum=0.098;SOR=0.489	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	112819	NC_020431.seq__112819	A	C	2018700	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.314;DP=1140311;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=0.438;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	112919	NC_020431.seq__112919	C	T	895632	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.16;DP=1138134;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=36.04;ReadPosRankSum=-0.012;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1623,0:1623:99:0,120,1800"
NC_020431.seq	112927	NC_020431.seq__112927	A	G	42349800	.	AC=2;AF=0.89;AN=2;BaseQRankSum=0.038;DP=1154309;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=29.54;ReadPosRankSum=-0.039;SOR=0.73	GT:AD:DP:GQ:PL	"1/1:0,1640:1640:99:61465,4925,0"
NC_020431.seq	112940	NC_020431.seq__112940	A	C	87981	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.313;DP=1158156;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.47;ReadPosRankSum=-0.662;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1652,0:1652:99:0,120,1800"
NC_020431.seq	112966	NC_020431.seq__112966	G	C	88567	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.476;DP=1158131;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.57;ReadPosRankSum=0.822;SOR=0.595	GT:AD:DP:GQ:PL	"0/0:1652,0:1652:99:0,120,1800"
NC_020431.seq	112978	NC_020431.seq__112978	C	T	245081	.	AC=0;AF=0.002618;AN=2;DP=1158207;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;QD=31.86;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:1652,0:1652:99:0,120,1800"
NC_020431.seq	112980	NC_020431.seq__112980	C	T	27485900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.558;DP=1160056;ExcessHet=-0;FS=0;InbreedingCoeff=0.9974;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=36.47;ReadPosRankSum=0.246;SOR=0.625	GT:AD:DP:GQ:PL	"1/1:20,1636:1656:99:60377,4250,0"
NC_020431.seq	112997	NC_020431.seq__112997	C	T	420545	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.91;DP=1160025;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.48;ReadPosRankSum=0.658;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:1696,0:1696:99:0,120,1800"
NC_020431.seq	113012	NC_020431.seq__113012	T	"*,C"	31958400	.	"AC=2,0;AF=0.674,0.002618;AN=2;BaseQRankSum=-0.268;DP=1146648;ExcessHet=-0;FS=0;InbreedingCoeff=0.995;MLEAC=515,2;MLEAF=0.674,0.002618;MQ=3.21;MQRankSum=0;QD=29.6;ReadPosRankSum=-5.37;SOR=0.724"	GT:AD:DP:GQ:PL	"1/1:10,1574,0:1588:99:62442,4344,0,57745,4746,55477"
NC_020431.seq	113066	NC_020431.seq__113066	A	G	989464	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.541;DP=1142339;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.5;ReadPosRankSum=1.22;SOR=0.376	GT:AD:DP:GQ:PL	"0/0:1688,0:1688:99:0,120,1800"
NC_020431.seq	113068	NC_020431.seq__113068	C	T	88978	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.131;DP=1143180;ExcessHet=0.0028;FS=3.099;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.55;ReadPosRankSum=0.32;SOR=0.273	GT:AD:DP:GQ:PL	"0/0:1688,0:1688:99:0,120,1800"
NC_020431.seq	113075	NC_020431.seq__113075	C	T	26139700	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.628;DP=1133827;ExcessHet=-0;FS=0;InbreedingCoeff=0.9989;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=32.63;ReadPosRankSum=0.185;SOR=0.692	GT:AD:DP:GQ:PL	"1/1:18,1681:1699:99:60882,4564,0"
NC_020431.seq	113087	NC_020431.seq__113087	T	G	455923	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.25;DP=1143343;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=29.94;ReadPosRankSum=-0.191;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	113115	NC_020431.seq__113115	T	A	104258	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.575;DP=1143670;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.08;ReadPosRankSum=-1.025;SOR=0.468	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	113124	NC_020431.seq__113124	T	G	44604500	.	AC=2;AF=1;AN=2;BaseQRankSum=3.56;DP=1144763;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=0;QD=29.93;ReadPosRankSum=1.18;SOR=0.544	GT:AD:DP:GQ:PL	"1/1:0,1715:1715:99:63850,5143,0"
NC_020431.seq	113147	NC_020431.seq__113147	G	A	1143520	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.321;DP=1089721;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.66;ReadPosRankSum=-0.409;SOR=0.587	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113149	NC_020431.seq__113149	T	G	205971	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.92;DP=1087904;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.056;QD=28.69;ReadPosRankSum=-0.331;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113183	NC_020431.seq__113183	G	A	456337	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.187;DP=1087898;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=33.59;ReadPosRankSum=-0.321;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113205	NC_020431.seq__113205	C	G	1670800	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.195;DP=1087206;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=30.85;ReadPosRankSum=-0.861;SOR=0.669	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113273	NC_020431.seq__113273	G	A	179721	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.857;DP=1086388;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.5;ReadPosRankSum=0.061;SOR=0.251	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113309	NC_020431.seq__113309	C	T	94164	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.622;DP=1084274;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.4;ReadPosRankSum=-1.499;SOR=0.502	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113348	NC_020431.seq__113348	C	T	197129	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.466;DP=1084233;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.081;QD=25.11;ReadPosRankSum=0.611;SOR=0.671	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113358	NC_020431.seq__113358	G	A	157015	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.971;DP=1084040;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.009;QD=31.37;ReadPosRankSum=0.53;SOR=0.504	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113390	NC_020431.seq__113390	T	G	2040820	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.72;DP=1085039;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=33.27;ReadPosRankSum=0.346;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113520	NC_020431.seq__113520	A	G	538131	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.128;DP=1082636;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=59.99;MQRankSum=0;QD=29.54;ReadPosRankSum=-0.219;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113581	NC_020431.seq__113581	C	T	161425	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.34;DP=1082025;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.016;QD=25.28;ReadPosRankSum=0.91;SOR=0.521	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113603	NC_020431.seq__113603	G	A	253528	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.422;DP=1081979;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.89;ReadPosRankSum=-0.249;SOR=0.43	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113654	NC_020431.seq__113654	C	T	202988	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.154;DP=1081951;ExcessHet=0;FS=0;InbreedingCoeff=0.9727;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=14.52;QD=32.56;ReadPosRankSum=-0.231;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113674	NC_020431.seq__113674	T	G	369457	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.53;DP=1082228;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=27.48;ReadPosRankSum=1.38;SOR=0.538	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113852	NC_020431.seq__113852	C	T	240164	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.068;DP=1081393;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.087;QD=28.75;ReadPosRankSum=-1.327;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113906	NC_020431.seq__113906	T	C	158712	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.51;DP=1081085;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.93;ReadPosRankSum=3.46;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113912	NC_020431.seq__113912	G	A	185438	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.965;DP=1081012;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.47;ReadPosRankSum=3.66;SOR=0.552	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113940	NC_020431.seq__113940	G	A	306574	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.51;DP=1081066;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.81;ReadPosRankSum=1.09;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	113978	NC_020431.seq__113978	T	G	770546	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.93;DP=1080813;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=25.18;ReadPosRankSum=-0.003;SOR=0.63	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114018	NC_020431.seq__114018	T	C	156235	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.99;DP=1080753;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.22;QD=25.38;ReadPosRankSum=0.658;SOR=0.739	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114065	NC_020431.seq__114065	T	G	3194080	.	AC=0;AF=0.089;AN=2;BaseQRankSum=1;DP=1083897;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=68;MLEAF=0.089;MQ=60;MQRankSum=0;QD=33.3;ReadPosRankSum=0.008;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114071	NC_020431.seq__114071	G	A	76493	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.826;DP=1080768;ExcessHet=0.0028;FS=1.75;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.68;ReadPosRankSum=0.175;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114324	NC_020431.seq__114324	G	A	306685	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.262;DP=1081063;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.52;ReadPosRankSum=1.14;SOR=0.589	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114377	NC_020431.seq__114377	A	G	873868	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.098;DP=1081486;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0.047;QD=30.98;ReadPosRankSum=-0.789;SOR=0.719	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114452	NC_020431.seq__114452	G	A	339814	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.9;DP=1079677;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.068;QD=32.19;ReadPosRankSum=2.41;SOR=0.592	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114456	NC_020431.seq__114456	G	A	151733	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.31;DP=1079637;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.001;QD=32;ReadPosRankSum=-1.435;SOR=0.586	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114459	NC_020431.seq__114459	T	C	168010	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.852;DP=1079382;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.81;ReadPosRankSum=0.446;SOR=0.602	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114514	NC_020431.seq__114514	A	C	44098	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.36;DP=1079402;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=35.86;ReadPosRankSum=0.469;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114517	NC_020431.seq__114517	T	A	1835020	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.042;DP=1081761;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.22;ReadPosRankSum=-0.482;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114527	NC_020431.seq__114527	A	G	1691330	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.19;DP=1083055;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=-0.424;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114537	NC_020431.seq__114537	C	"A,T"	2118090	.	"AC=0,0;AF=0.035,0.002618;AN=2;BaseQRankSum=0.279;DP=1082869;ExcessHet=-0;FS=0;InbreedingCoeff=0.9641;MLEAC=27,2;MLEAF=0.035,0.002618;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=0.056;SOR=0.681"	GT:AD:DP:GQ:PL	"0/0:1514,0,0:1514:99:0,120,1800,120,1800,1800"
NC_020431.seq	114566	NC_020431.seq__114566	T	G	290961	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.467;DP=1082050;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=35.6;ReadPosRankSum=2.2;SOR=0.565	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114567	NC_020431.seq__114567	A	G	768698	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.344;DP=1082296;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=28.56;ReadPosRankSum=1;SOR=0.54	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114660	NC_020431.seq__114660	C	T	86330	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.752;DP=1081803;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.74;ReadPosRankSum=-0.341;SOR=0.582	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114671	NC_020431.seq__114671	G	"*,A"	1750750	.	"AC=0,0;AF=0.02,0.002618;AN=2;BaseQRankSum=1.43;DP=1081240;ExcessHet=0.4044;FS=4.355;InbreedingCoeff=0.0976;MLEAC=15,2;MLEAF=0.02,0.002618;MQ=15.57;MQRankSum=-0.203;QD=32.3;ReadPosRankSum=0.366;SOR=0.369"	GT:AD:DP:GQ:PL	"0/0:1514,0,0:1514:99:0,120,1800,120,1800,1800"
NC_020431.seq	114675	NC_020431.seq__114675	T	"C,A"	1222680	.	"AC=0,0;AF=0.018,0.001309;AN=2;BaseQRankSum=5.1;DP=1080097;ExcessHet=3.6188;FS=3.974;InbreedingCoeff=-0.02;MLEAC=14,1;MLEAF=0.018,0.001309;MQ=59.98;MQRankSum=0;QD=25.69;ReadPosRankSum=-3.453;SOR=0.387"	GT:AD:DP:GQ:PL	"0/0:1514,0,0:1514:99:0,120,1800,120,1800,1800"
NC_020431.seq	114676	NC_020431.seq__114676	T	A	1311240	.	AC=0;AF=0.02;AN=2;BaseQRankSum=4.51;DP=1079798;ExcessHet=3.6188;FS=2.829;InbreedingCoeff=-0.02;MLEAC=15;MLEAF=0.02;MQ=59.98;MQRankSum=0;QD=27.62;ReadPosRankSum=24.62;SOR=0.366	GT:AD:DP:GQ:PL	"0/0:1514,0:1514:99:0,120,1800"
NC_020431.seq	114677	NC_020431.seq__114677	G	"T,A"	26237400	.	"AC=2,0;AF=0.535,0.02;AN=2;BaseQRankSum=0.256;DP=1042734;ExcessHet=-0;FS=0;InbreedingCoeff=0.9258;MLEAC=409,15;MLEAF=0.535,0.02;MQ=59.99;MQRankSum=0;QD=27.09;ReadPosRankSum=-0.117;SOR=0.486"	GT:AD:DP:GQ:PL	"1/1:4,1421,0:1425:99:55106,4135,0,55118,4290,55273"
NC_020431.seq	114712	NC_020431.seq__114712	A	T	687233	.	AC=0;AF=0.007895;AN=2;BaseQRankSum=-0.089;DP=1030703;ExcessHet=0.0003;FS=0;InbreedingCoeff=0.5654;MLEAC=6;MLEAF=0.007895;MQ=56.42;MQRankSum=0.012;QD=30.35;ReadPosRankSum=2.93;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:1419,0:1419:99:0,120,1800"
NC_020431.seq	114713	NC_020431.seq__114713	G	A	582636	.	AC=0;AF=0.065;AN=0;BaseQRankSum=2.42;DP=1022773;ExcessHet=0;FS=3.564;InbreedingCoeff=0.7852;MLEAC=26;MLEAF=0.065;MQ=12.56;MQRankSum=0;QD=26.7;ReadPosRankSum=0.163;SOR=0.629	GT:AD:DP:PL	"./.:1423,0:1423:0,0,0"
NC_020431.seq	114714	NC_020431.seq__114714	A	G	1344230	.	AC=0;AF=0.032;AN=2;BaseQRankSum=-0.084;DP=1022632;ExcessHet=0;FS=0;InbreedingCoeff=0.836;MLEAC=24;MLEAF=0.032;MQ=58.87;MQRankSum=0;QD=31.98;ReadPosRankSum=1.53;SOR=0.591	GT:AD:DP:GQ:PL	"0/0:1419,0:1419:99:0,120,1800"
NC_020431.seq	114731	NC_020431.seq__114731	G	T	262983	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.33;DP=993037;ExcessHet=63.7172;FS=2.107;InbreedingCoeff=-0.1025;MLEAC=7;MLEAF=0.009162;MQ=59.99;MQRankSum=0;QD=31.15;ReadPosRankSum=2.64;SOR=0.491	GT:AD:DP:GQ:PL	"0/0:1354,0:1354:0:0,0,36906"
NC_020431.seq	114786	NC_020431.seq__114786	A	G	787323	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.135;DP=954583;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.62;ReadPosRankSum=-0.154;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1302,0:1302:99:0,120,1800"
NC_020431.seq	114825	NC_020431.seq__114825	A	G	802169	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.442;DP=957499;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.07;ReadPosRankSum=-0.111;SOR=0.79	GT:AD:DP:GQ:PL	"0/0:1302,0:1302:99:0,120,1800"
NC_020431.seq	114840	NC_020431.seq__114840	G	A	304169	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.21;DP=958755;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=0.323;SOR=0.481	GT:AD:DP:GQ:PL	"0/0:1302,0:1302:99:0,120,1800"
NC_020431.seq	115017	NC_020431.seq__115017	C	A	166509	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.791;DP=959911;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.683;QD=27.17;ReadPosRankSum=0.293;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1302,0:1302:99:0,120,1800"
NC_020431.seq	115036	NC_020431.seq__115036	T	C	415811	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.87;DP=962095;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=15.32;QD=29.14;ReadPosRankSum=0.197;SOR=0.558	GT:AD:DP:GQ:PL	"0/0:1302,0:1302:99:0,120,1800"
NC_020431.seq	115053	NC_020431.seq__115053	T	G	8183010	.	AC=2;AF=0.168;AN=2;BaseQRankSum=1.24;DP=1014685;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=33.86;ReadPosRankSum=0.075;SOR=0.641	GT:AD:DP:GQ:PL	"1/1:29,1580:1609:99:59060,3746,0"
NC_020431.seq	115107	NC_020431.seq__115107	T	G	976293	.	AC=0;AF=0.016;AN=2;BaseQRankSum=1.83;DP=1025665;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.59;ReadPosRankSum=0.617;SOR=0.705	GT:AD:DP:GQ:PL	"0/0:1626,0:1626:99:0,120,1800"
NC_020431.seq	115121	NC_020431.seq__115121	C	T	75050	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.691;DP=1026066;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.22;ReadPosRankSum=-0.87;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1626,0:1626:99:0,120,1800"
NC_020431.seq	115123	NC_020431.seq__115123	A	G	27827400	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.328;DP=1148721;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=29.9;ReadPosRankSum=-0.036;SOR=0.634	GT:AD:DP:GQ:PL	"1/1:6,1689:1697:99:62822,4838,0"
NC_020431.seq	115145	NC_020431.seq__115145	C	T	111292	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.8;DP=1149311;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.16;ReadPosRankSum=1.32;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1725,0:1725:99:0,120,1800"
NC_020431.seq	115193	NC_020431.seq__115193	A	C	1344240	.	AC=0;AF=0.039;AN=2;BaseQRankSum=1.35;DP=1150092;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=30;MLEAF=0.039;MQ=60;MQRankSum=0;QD=28.77;ReadPosRankSum=0.271;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1725,0:1725:99:0,120,1800"
NC_020431.seq	115220	NC_020431.seq__115220	A	T	324067	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.13;DP=1150176;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=37.09;ReadPosRankSum=-0.834;SOR=0.64	GT:AD:DP:GQ:PL	"0/0:1725,0:1725:99:0,120,1800"
NC_020431.seq	115225	NC_020431.seq__115225	T	G	378946	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.73;DP=1150438;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.74;ReadPosRankSum=0.367;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1725,0:1725:99:0,120,1800"
NC_020431.seq	115240	NC_020431.seq__115240	A	C	43043500	.	AC=2;AF=0.89;AN=2;BaseQRankSum=2.54;DP=1208685;ExcessHet=-0;FS=0;InbreedingCoeff=0.9998;MLEAC=680;MLEAF=0.89;MQ=60;MQRankSum=0;QD=29.41;ReadPosRankSum=0.535;SOR=0.485	GT:AD:DP:GQ:PL	"1/1:0,1724:1724:99:65167,5175,0"
NC_020431.seq	115243	NC_020431.seq__115243	C	T	171260	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.055;DP=1171360;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=58.72;MQRankSum=5.53;QD=29.54;ReadPosRankSum=1.42;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115248	NC_020431.seq__115248	A	C	214502	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.5;DP=1171093;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.07;QD=32.2;ReadPosRankSum=0.73;SOR=0.825	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115282	NC_020431.seq__115282	G	A	178735	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.262;DP=1171100;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9922;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=1.34;QD=29.34;ReadPosRankSum=0.53;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115316	NC_020431.seq__115316	G	A	108405	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.25;DP=1170846;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.88;ReadPosRankSum=0.34;SOR=0.524	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115483	NC_020431.seq__115483	C	T	319648	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.474;DP=1170856;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.4;ReadPosRankSum=0.736;SOR=0.912	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115519	NC_020431.seq__115519	A	C	821589	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.08;DP=1170733;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.2;ReadPosRankSum=1.79;SOR=0.72	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115542	NC_020431.seq__115542	C	T	218552	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.863;DP=1170251;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.072;QD=26.1;ReadPosRankSum=-0.684;SOR=0.856	GT:AD:DP:GQ:PL	"0/0:1693,0:1693:99:0,120,1800"
NC_020431.seq	115585	NC_020431.seq__115585	T	G	269919	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.808;DP=1135201;ExcessHet=0;FS=0;InbreedingCoeff=0.999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=15.76;QD=27.83;ReadPosRankSum=4.89;SOR=0.407	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115601	NC_020431.seq__115601	G	A	287438	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.19;DP=1134085;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.3;ReadPosRankSum=1.71;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115677	NC_020431.seq__115677	T	G	860180	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.427;DP=1134170;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=30.65;ReadPosRankSum=0.805;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115704	NC_020431.seq__115704	A	"*,C"	2202370	.	"AC=0,0;AF=0.018,0.037;AN=2;BaseQRankSum=0.4;DP=1143825;ExcessHet=-0;FS=0;InbreedingCoeff=0.9675;MLEAC=14,28;MLEAF=0.018,0.037;MQ=44.12;MQRankSum=5.54;QD=29.86;ReadPosRankSum=1.14;SOR=0.705"	GT:AD:DP:GQ:PL	"0/0:1634,0,0:1634:99:0,120,1800,120,1800,1800"
NC_020431.seq	115715	NC_020431.seq__115715	A	C	145625	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.34;DP=1137885;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.002;QD=34.01;ReadPosRankSum=1.87;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115743	NC_020431.seq__115743	T	G	330637	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.487;DP=1137773;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.14;ReadPosRankSum=0.557;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115815	NC_020431.seq__115815	G	A	4189640	.	AC=0;AF=0.105;AN=2;BaseQRankSum=-0.127;DP=1144856;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=80;MLEAF=0.105;MQ=60;MQRankSum=0;QD=25.68;ReadPosRankSum=0.185;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115899	NC_020431.seq__115899	C	T	169394	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.706;DP=1139122;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.025;QD=33.86;ReadPosRankSum=-0.399;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	115940	NC_020431.seq__115940	T	C	1687610	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.457;DP=1139458;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=30.85;ReadPosRankSum=-0.094;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	116016	NC_020431.seq__116016	C	T	166624	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.824;DP=1138582;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.183;QD=29.74;ReadPosRankSum=0.557;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1634,0:1634:99:0,120,1800"
NC_020431.seq	116037	NC_020431.seq__116037	G	A	28071900	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.033;DP=1182822;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=28.62;ReadPosRankSum=-0.044;SOR=0.724	GT:AD:DP:GQ:PL	"1/1:7,1796:1803:99:67172,5145,0"
NC_020431.seq	116039	NC_020431.seq__116039	G	A	176299	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.425;DP=1168391;ExcessHet=0.0028;FS=2.107;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.049;QD=31.2;ReadPosRankSum=0.273;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116040	NC_020431.seq__116040	A	C	923860	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.097;DP=1168208;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.064;QD=28.91;ReadPosRankSum=0.678;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116076	NC_020431.seq__116076	C	T	356397	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.22;DP=1167602;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=24.68;ReadPosRankSum=-0.106;SOR=0.636	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116145	NC_020431.seq__116145	G	T	165511	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.74;DP=1167422;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.024;QD=32.26;ReadPosRankSum=-0.701;SOR=0.831	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116152	NC_020431.seq__116152	G	A	231706	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.02;DP=1167381;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.36;ReadPosRankSum=-1.734;SOR=0.317	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116159	NC_020431.seq__116159	T	C	672347	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.38;DP=1167863;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=31.35;ReadPosRankSum=1.34;SOR=0.714	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116196	NC_020431.seq__116196	C	T	43742	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.068;DP=1168013;ExcessHet=0.0028;FS=2.208;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.99;ReadPosRankSum=0.412;SOR=0.778	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116284	NC_020431.seq__116284	T	G	777007	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.488;DP=1169388;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0.012;QD=30.19;ReadPosRankSum=0.276;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:1779,0:1779:99:0,120,1800"
NC_020431.seq	116404	NC_020431.seq__116404	A	G	349885	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.808;DP=1175870;ExcessHet=0;FS=1.741;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.8;ReadPosRankSum=-0.011;SOR=0.774	GT:AD:DP:GQ:PL	"0/0:1707,0:1707:99:0,120,1800"
NC_020431.seq	116425	NC_020431.seq__116425	T	C	92751	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.641;DP=1175601;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.55;ReadPosRankSum=2.12;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1707,0:1707:99:0,120,1800"
NC_020431.seq	116456	NC_020431.seq__116456	C	G	29586000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.546;DP=1147752;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=27.6;ReadPosRankSum=0.273;SOR=0.607	GT:AD:DP:GQ:PL	"1/1:11,1667:1681:99:73531,4786,0"
NC_020431.seq	116463	NC_020431.seq__116463	T	G	43420400	.	AC=2;AF=0.887;AN=2;BaseQRankSum=1.11;DP=1138891;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=678;MLEAF=0.887;MQ=60;MQRankSum=0;QD=30.62;ReadPosRankSum=0.145;SOR=0.695	GT:AD:DP:GQ:PL	"1/1:3,1685:1690:99:75220,5054,0"
NC_020431.seq	116500	NC_020431.seq__116500	A	C	160468	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.98;DP=1131928;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.142;QD=22.23;ReadPosRankSum=4.34;SOR=0.523	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,102,1530"
NC_020431.seq	116506	NC_020431.seq__116506	A	C	516777	.	AC=0;AF=0.024;AN=2;BaseQRankSum=2.26;DP=1130474;ExcessHet=0;FS=1.724;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=31.04;ReadPosRankSum=1.6;SOR=0.776	GT:AD:DP:GQ:PL	"0/0:1757,0:1757:99:0,102,1530"
NC_020431.seq	116539	NC_020431.seq__116539	G	A	46843	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.844;DP=1092744;ExcessHet=0.0028;FS=2.094;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.59;ReadPosRankSum=-2.548;SOR=0.473	GT:AD:DP:GQ:PL	"0/0:1630,0:1630:99:0,120,1800"
NC_020431.seq	116612	NC_020431.seq__116612	G	A	295374	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.926;DP=1094739;ExcessHet=0;FS=1.786;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.164;QD=30.53;ReadPosRankSum=0.513;SOR=0.838	GT:AD:DP:GQ:PL	"0/0:1630,0:1630:99:0,120,1800"
NC_020431.seq	116626	NC_020431.seq__116626	C	T	361526	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-1.037;DP=1095950;ExcessHet=0;FS=0;InbreedingCoeff=0.9853;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.12;ReadPosRankSum=1.28;SOR=0.538	GT:AD:DP:GQ:PL	"0/0:1630,0:1630:99:0,120,1800"
NC_020431.seq	116666	NC_020431.seq__116666	G	A	171518	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.15;DP=1123933;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.38;ReadPosRankSum=1.48;SOR=0.67	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	116672	NC_020431.seq__116672	T	G	173877	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.311;DP=1124097;ExcessHet=0.0594;FS=1.741;InbreedingCoeff=0.4412;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.81;ReadPosRankSum=-0.911;SOR=0.781	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	116718	NC_020431.seq__116718	A	C	194574	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.51;DP=1122767;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.43;ReadPosRankSum=0.908;SOR=0.515	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	116721	NC_020431.seq__116721	T	G	417308	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.38;DP=1123774;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.58;ReadPosRankSum=1.02;SOR=0.691	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	116753	NC_020431.seq__116753	C	T	413670	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.032;DP=1124077;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=24.25;ReadPosRankSum=0.985;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	117009	NC_020431.seq__117009	A	G	177364	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.579;DP=1124148;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.036;QD=29.74;ReadPosRankSum=1.42;SOR=0.737	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	117033	NC_020431.seq__117033	G	T	268298	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2;DP=1124528;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=22.93;ReadPosRankSum=0.125;SOR=0.754	GT:AD:DP:GQ:PL	"0/0:1752,0:1752:99:0,120,1800"
NC_020431.seq	117126	NC_020431.seq__117126	A	G	28281300	.	AC=2;AF=0.531;AN=2;BaseQRankSum=-0.159;DP=1188291;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=27.29;ReadPosRankSum=-0.025;SOR=0.742	GT:AD:DP:GQ:PL	"1/1:21,1820:1841:99:68398,4882,0"
NC_020431.seq	117159	NC_020431.seq__117159	A	G	1122330	.	AC=0;AF=0.018;AN=2;BaseQRankSum=-1.489;DP=1144453;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.33;ReadPosRankSum=0.304;SOR=0.822	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117174	NC_020431.seq__117174	A	G	909694	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-1.047;DP=1144018;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.62;ReadPosRankSum=2.84;SOR=0.696	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117186	NC_020431.seq__117186	G	A	212881	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.009;DP=1143608;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.065;QD=30.88;ReadPosRankSum=1.21;SOR=0.841	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117196	NC_020431.seq__117196	G	A	168794	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.544;DP=1143300;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.024;QD=30.64;ReadPosRankSum=1.26;SOR=0.869	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117203	NC_020431.seq__117203	T	G	323650	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.06;DP=1143728;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.98;ReadPosRankSum=0.738;SOR=0.89	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117216	NC_020431.seq__117216	A	T	2166310	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.074;DP=1144573;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=28.45;ReadPosRankSum=-0.692;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117494	NC_020431.seq__117494	C	T	46589	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.897;DP=1142103;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.55;ReadPosRankSum=1.57;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117503	NC_020431.seq__117503	A	C	164544	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.041;DP=1142001;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.14;ReadPosRankSum=-0.082;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117508	NC_020431.seq__117508	G	A	1793360	.	AC=0;AF=0.031;AN=2;BaseQRankSum=1.16;DP=1144527;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=28.69;ReadPosRankSum=0.367;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117904	NC_020431.seq__117904	A	G	100225	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.577;DP=1138511;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=59.98;MQRankSum=11.32;QD=30.33;ReadPosRankSum=1.21;SOR=0.414	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117920	NC_020431.seq__117920	A	C	207343	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.79;DP=1138782;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=7.95;QD=27.86;ReadPosRankSum=0.552;SOR=0.479	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117966	NC_020431.seq__117966	G	A	166068	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.22;DP=1138659;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=5.46;QD=32.86;ReadPosRankSum=-0.057;SOR=0.76	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	117995	NC_020431.seq__117995	T	G	986886	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.67;DP=1139346;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=25.66;ReadPosRankSum=0.848;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118018	NC_020431.seq__118018	T	G	313460	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.13;DP=1138598;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.71;ReadPosRankSum=2.02;SOR=0.635	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118097	NC_020431.seq__118097	T	G	325958	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.464;DP=1138597;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.52;ReadPosRankSum=1.47;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118114	NC_020431.seq__118114	T	G	4655010	.	AC=0;AF=0.076;AN=2;BaseQRankSum=1.34;DP=1147039;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=58;MLEAF=0.076;MQ=60;MQRankSum=0;QD=25.67;ReadPosRankSum=0.492;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118168	NC_020431.seq__118168	G	A	306152	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.797;DP=1140739;ExcessHet=0.2724;FS=0;InbreedingCoeff=0.2105;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.059;QD=31.22;ReadPosRankSum=1.28;SOR=0.791	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118169	NC_020431.seq__118169	C	T	576048	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.015;DP=1141716;ExcessHet=0.0002;FS=0;InbreedingCoeff=0.4523;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.28;ReadPosRankSum=1.85;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118170	NC_020431.seq__118170	A	C	323211	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.06;DP=1143869;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.51;ReadPosRankSum=1.33;SOR=0.482	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118182	NC_020431.seq__118182	G	A	717812	.	AC=0;AF=0.016;AN=2;BaseQRankSum=-0.318;DP=1135839;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.87;ReadPosRankSum=1.2;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118224	NC_020431.seq__118224	T	C	128660	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.35;DP=1131681;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.02;ReadPosRankSum=-0.02;SOR=0.554	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118307	NC_020431.seq__118307	C	T	169575	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.52;DP=1132024;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.027;QD=29.09;ReadPosRankSum=1.99;SOR=0.754	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118312	NC_020431.seq__118312	G	A	195514	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.32;DP=1132684;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=25.01;ReadPosRankSum=0.077;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118356	NC_020431.seq__118356	A	G	235547	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.4;DP=1132403;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.042;QD=27.16;ReadPosRankSum=-0.531;SOR=0.486	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118360	NC_020431.seq__118360	A	C	323381	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.804;DP=1132347;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.24;ReadPosRankSum=0.506;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	118412	NC_020431.seq__118412	T	G	27572700	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.855;DP=1147104;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.2;ReadPosRankSum=0.194;SOR=0.604	GT:AD:DP:GQ:PL	"1/1:9,1850:1859:99:69206,5194,0"
NC_020431.seq	118430	NC_020431.seq__118430	G	A	433414	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.91;DP=1135740;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=0.847;SOR=0.656	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	118555	NC_020431.seq__118555	C	T	126424	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.413;DP=1131166;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.84;ReadPosRankSum=-0.653;SOR=0.736	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	118685	NC_020431.seq__118685	G	"T,A"	889503	.	"AC=0,0;AF=0.01,0.007853;AN=2;BaseQRankSum=0.401;DP=1132281;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8,6;MLEAF=0.01,0.007853;MQ=60;MQRankSum=0;QD=31.45;ReadPosRankSum=-0.411;SOR=0.671"	GT:AD:DP:GQ:PL	"0/0:1786,0,0:1786:99:0,120,1800,120,1800,1800"
NC_020431.seq	118725	NC_020431.seq__118725	G	T	28838500	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.349;DP=1169978;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=28.81;ReadPosRankSum=0.071;SOR=0.666	GT:AD:DP:GQ:PL	"1/1:7,1845:1852:99:68880,5272,0"
NC_020431.seq	118739	NC_020431.seq__118739	C	T	63487	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.698;DP=1140842;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=-0.803;SOR=0.683	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	118751	NC_020431.seq__118751	G	A	304369	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.61;DP=1140606;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.56;ReadPosRankSum=0.694;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	118770	NC_020431.seq__118770	A	G	46646	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.24;DP=1140354;ExcessHet=0.0028;FS=2.107;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.66;ReadPosRankSum=-0.567;SOR=0.535	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	119018	NC_020431.seq__119018	G	A	1011370	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.205;DP=1145146;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=31.75;ReadPosRankSum=0.108;SOR=0.596	GT:AD:DP:GQ:PL	"0/0:1694,0:1694:99:0,120,1800"
NC_020431.seq	119084	NC_020431.seq__119084	G	A	27925500	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.053;DP=1147610;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.6;ReadPosRankSum=0.11;SOR=0.665	GT:AD:DP:GQ:PL	"1/1:8,1705:1713:99:64705,4849,0"
NC_020431.seq	119087	NC_020431.seq__119087	T	G	3399620	.	AC=0;AF=0.088;AN=2;BaseQRankSum=1.53;DP=1101150;ExcessHet=-0;FS=0;InbreedingCoeff=0.9836;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=30.26;ReadPosRankSum=0.729;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119139	NC_020431.seq__119139	C	T	43694	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.474;DP=1094256;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.61;ReadPosRankSum=-0.273;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119331	NC_020431.seq__119331	T	G	204985	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.91;DP=1094282;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.058;QD=31.92;ReadPosRankSum=0.612;SOR=0.769	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119536	NC_020431.seq__119536	T	G	297808	.	AC=0;AF=0.01;AN=2;BaseQRankSum=2.53;DP=1093875;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.43;ReadPosRankSum=1.49;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119646	NC_020431.seq__119646	C	T	364900	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.624;DP=1093637;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.085;QD=25.87;ReadPosRankSum=1.75;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119845	NC_020431.seq__119845	T	G	949328	.	AC=0;AF=0.018;AN=2;BaseQRankSum=1.84;DP=1093635;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=32.94;ReadPosRankSum=-0.525;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119872	NC_020431.seq__119872	C	G	107900	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.9;DP=1092887;ExcessHet=0;FS=0;InbreedingCoeff=0.9961;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.53;ReadPosRankSum=0.838;SOR=0.497	GT:AD:DP:GQ:PL	"0/0:1510,0:1510:99:0,120,1800"
NC_020431.seq	119899	NC_020431.seq__119899	T	G	7890270	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.92;DP=1093883;ExcessHet=-0;FS=0;InbreedingCoeff=0.9999;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=35.89;ReadPosRankSum=0.282;SOR=0.766	GT:AD:DP:GQ:PL	"1/1:28,1531:1559:99:57942,3580,0"
NC_020431.seq	119916	NC_020431.seq__119916	C	T	841184	.	AC=0;AF=0.013;AN=2;BaseQRankSum=-0.236;DP=1092495;ExcessHet=0;FS=0;InbreedingCoeff=0.9984;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0.072;QD=31.98;ReadPosRankSum=0.727;SOR=0.735	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	119979	NC_020431.seq__119979	C	T	156156	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.746;DP=1092545;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.58;ReadPosRankSum=0.49;SOR=0.536	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120039	NC_020431.seq__120039	C	T	166745	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.068;DP=1092735;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.023;QD=28.3;ReadPosRankSum=0.457;SOR=0.914	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120274	NC_020431.seq__120274	A	G	6185.04	.	AC=0;AF=0.014;AN=2;BaseQRankSum=0.672;DP=1096468;ExcessHet=3.6974;FS=1.018;InbreedingCoeff=-0.018;MLEAC=11;MLEAF=0.014;MQ=60;MQRankSum=0;QD=0.45;ReadPosRankSum=2.46;SOR=0.707	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120286	NC_020431.seq__120286	A	G	7943.17	.	AC=0;AF=0.014;AN=2;BaseQRankSum=0.648;DP=1096112;ExcessHet=3.5327;FS=1.021;InbreedingCoeff=-0.0166;MLEAC=11;MLEAF=0.014;MQ=60;MQRankSum=0;QD=0.56;ReadPosRankSum=1.63;SOR=0.729	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120293	NC_020431.seq__120293	G	A	422365	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.224;DP=1094098;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.76;ReadPosRankSum=-1.939;SOR=0.609	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120405	NC_020431.seq__120405	T	C	203329	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.88;DP=1094077;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.057;QD=24.57;ReadPosRankSum=1.33;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120406	NC_020431.seq__120406	A	G	5750310	.	AC=0;AF=0.196;AN=2;BaseQRankSum=0.501;DP=1103733;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=150;MLEAF=0.196;MQ=60;MQRankSum=0;QD=31.63;ReadPosRankSum=0.249;SOR=0.622	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120417	NC_020431.seq__120417	C	T	187789	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.45;DP=1101976;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.81;ReadPosRankSum=2.33;SOR=0.579	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120433	NC_020431.seq__120433	A	G	187491	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.85;DP=1101986;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.74;ReadPosRankSum=2.12;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120588	NC_020431.seq__120588	A	C	244213	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.752;DP=1102107;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.052;QD=25.36;ReadPosRankSum=0.946;SOR=0.559	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120594	NC_020431.seq__120594	A	C	5175640	.	AC=0;AF=0.102;AN=2;BaseQRankSum=-0.979;DP=1110544;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=78;MLEAF=0.102;MQ=60;MQRankSum=0;QD=27.82;ReadPosRankSum=-0.023;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120614	NC_020431.seq__120614	T	C	162810	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.7;DP=1108851;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.21;ReadPosRankSum=-1.658;SOR=0.667	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120635	NC_020431.seq__120635	C	T	210454	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.243;DP=1109018;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.064;QD=29.56;ReadPosRankSum=0.467;SOR=0.645	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120684	NC_020431.seq__120684	G	A	161748	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.65;DP=1108911;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=25.76;ReadPosRankSum=0.737;SOR=0.816	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120823	NC_020431.seq__120823	G	A	108905	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.506;DP=1109000;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=59.98;MQRankSum=12.05;QD=33.62;ReadPosRankSum=0.061;SOR=0.498	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120847	NC_020431.seq__120847	T	C	161545	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.02;DP=1108882;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.06;ReadPosRankSum=-1.251;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120880	NC_020431.seq__120880	C	T	1725860	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.247;DP=1113132;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=-0.305;SOR=0.648	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120894	NC_020431.seq__120894	T	C	5335800	.	AC=0;AF=0.186;AN=2;BaseQRankSum=0.055;DP=1119446;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=31.51;ReadPosRankSum=-0.118;SOR=0.68	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120904	NC_020431.seq__120904	A	C	1425520	.	AC=0;AF=0.026;AN=2;BaseQRankSum=2.04;DP=1122704;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=56.1;MQRankSum=0;QD=26.21;ReadPosRankSum=0.459;SOR=0.606	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120914	NC_020431.seq__120914	T	C	183406	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.73;DP=1119581;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.013;QD=30.72;ReadPosRankSum=0.195;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	120917	NC_020431.seq__120917	T	C	182978	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.568;DP=1119567;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.58;ReadPosRankSum=-0.005;SOR=0.69	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	121000	NC_020431.seq__121000	C	A	732221	.	AC=0;AF=0.01;AN=2;BaseQRankSum=1.45;DP=1121973;ExcessHet=0;FS=3.213;InbreedingCoeff=0.999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=26.04;ReadPosRankSum=0.029;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	121046	NC_020431.seq__121046	A	C	167459	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.95;DP=1122253;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=33.8;ReadPosRankSum=0.775;SOR=0.355	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	121054	NC_020431.seq__121054	T	G	2877020	.	AC=0;AF=0.058;AN=2;BaseQRankSum=1.22;DP=1128229;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=31.91;ReadPosRankSum=-0.064;SOR=0.582	GT:AD:DP:GQ:PL	"0/0:1567,0:1567:99:0,120,1800"
NC_020431.seq	121076	NC_020431.seq__121076	G	T	28963200	.	AC=2;AF=0.539;AN=2;BaseQRankSum=0.981;DP=1178853;ExcessHet=-0;FS=0;InbreedingCoeff=0.9973;MLEAC=412;MLEAF=0.539;MQ=60;MQRankSum=0;QD=30.99;ReadPosRankSum=0.301;SOR=0.684	GT:AD:DP:GQ:PL	"1/1:8,1721:1729:99:64679,4872,0"
NC_020431.seq	121081	NC_020431.seq__121081	A	C	204230	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.5;DP=1161635;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.076;QD=27.22;ReadPosRankSum=1.01;SOR=0.497	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121088	NC_020431.seq__121088	C	T	1255730	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.447;DP=1161452;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.08;ReadPosRankSum=0.196;SOR=0.687	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121102	NC_020431.seq__121102	T	G	6049830	.	AC=0;AF=0.196;AN=2;BaseQRankSum=0.521;DP=1166275;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=150;MLEAF=0.196;MQ=60;MQRankSum=0;QD=32.04;ReadPosRankSum=0.45;SOR=0.678	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121120	NC_020431.seq__121120	G	A	633478	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-1.816;DP=1158732;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=37.87;ReadPosRankSum=0.056;SOR=0.741	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121127	NC_020431.seq__121127	T	G	190829	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.98;DP=1158180;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.76;ReadPosRankSum=0.067;SOR=0.662	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121144	NC_020431.seq__121144	T	C	189159	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.66;DP=1158146;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.021;QD=30.44;ReadPosRankSum=0.318;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121149	NC_020431.seq__121149	T	C	186786	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.702;DP=1158182;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.023;QD=32.11;ReadPosRankSum=-0.345;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121160	NC_020431.seq__121160	T	G	211886	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.151;DP=1159225;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.066;QD=29.83;ReadPosRankSum=-0.35;SOR=0.46	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121173	NC_020431.seq__121173	A	C	160416	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.32;DP=1159182;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.44;ReadPosRankSum=-0.262;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121226	NC_020431.seq__121226	T	G	608767	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=1.64;DP=1158838;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.008;QD=23.89;ReadPosRankSum=-0.499;SOR=0.53	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121232	NC_020431.seq__121232	A	C	287425	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.24;DP=1158443;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.43;ReadPosRankSum=0.903;SOR=0.71	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121243	NC_020431.seq__121243	C	T	693731	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.965;DP=1158376;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=1.15;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121244	NC_020431.seq__121244	C	T	836206	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.774;DP=1158797;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=0.133;SOR=0.546	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121254	NC_020431.seq__121254	C	A	27966100	.	AC=2;AF=0.538;AN=2;BaseQRankSum=0.697;DP=1160075;ExcessHet=-0;FS=0;InbreedingCoeff=0.9947;MLEAC=411;MLEAF=0.538;MQ=60;MQRankSum=0;QD=29.61;ReadPosRankSum=-0.01;SOR=0.608	GT:AD:DP:GQ:PL	"1/1:6,1737:1747:99:66088,5006,0"
NC_020431.seq	121255	NC_020431.seq__121255	T	G	419692	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.35;DP=1148098;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.21;ReadPosRankSum=1.65;SOR=0.521	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121256	NC_020431.seq__121256	A	C	475519	.	AC=0;AF=0.013;AN=2;BaseQRankSum=2.39;DP=1149262;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=33.84;ReadPosRankSum=1.59;SOR=0.813	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121268	NC_020431.seq__121268	A	C	45795	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.796;DP=1148561;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.85;ReadPosRankSum=1.12;SOR=0.039	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121297	NC_020431.seq__121297	A	C	812603	.	AC=0;AF=0.024;AN=2;BaseQRankSum=3.47;DP=1148365;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=27.17;ReadPosRankSum=0.959;SOR=0.851	GT:AD:DP:GQ:PL	"0/0:1735,0:1735:99:0,120,1800"
NC_020431.seq	121343	NC_020431.seq__121343	G	C	26278900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.427;DP=1166192;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.63;ReadPosRankSum=0.271;SOR=0.681	GT:AD:DP:GQ:PL	"1/1:8,1773:1791:99:62607,4984,0"
NC_020431.seq	121423	NC_020431.seq__121423	T	G	115262	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=-0.817;DP=1158511;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=0;QD=32;ReadPosRankSum=0.09;SOR=0.598	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:99:0,120,1800"
NC_020431.seq	121466	NC_020431.seq__121466	T	G	172792	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.792;DP=1158598;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.033;QD=29.15;ReadPosRankSum=0.534;SOR=0.547	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:99:0,120,1800"
NC_020431.seq	121488	NC_020431.seq__121488	T	G	327981	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.4;DP=1158662;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.46;ReadPosRankSum=1.25;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1783,0:1783:99:0,120,1800"
NC_020431.seq	121542	NC_020431.seq__121542	A	G	331907	.	AC=0;AF=0.01;AN=0;BaseQRankSum=2.23;DP=1166228;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.01;MQ=6.93;MQRankSum=0;QD=31.72;ReadPosRankSum=1.74;SOR=0.528	GT:AD:DP:PL	"./.:1823,0:1823:0,0,0"
NC_020431.seq	121560	NC_020431.seq__121560	C	T	2566830	.	AC=0;AF=0.056;AN=2;BaseQRankSum=0.982;DP=1119092;ExcessHet=-0;FS=0;InbreedingCoeff=0.7707;MLEAC=43;MLEAF=0.056;MQ=60;MQRankSum=0;QD=30.41;ReadPosRankSum=-0.83;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1811,0:1811:0:0,0,56586"
NC_020431.seq	121586	NC_020431.seq__121586	T	G	51269	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.314;DP=1112538;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.13;ReadPosRankSum=-1.463;SOR=0.138	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121601	NC_020431.seq__121601	G	A	1168150	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.389;DP=1112291;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=29.36;ReadPosRankSum=-1.504;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121674	NC_020431.seq__121674	A	G	195849	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.854;DP=1112268;ExcessHet=0.0028;FS=1.365;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=6.92;QD=32.04;ReadPosRankSum=1.16;SOR=0.521	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121680	NC_020431.seq__121680	T	A	3379280	.	AC=0;AF=0.088;AN=2;BaseQRankSum=0.084;DP=1119218;ExcessHet=-0;FS=0;InbreedingCoeff=0.9836;MLEAC=67;MLEAF=0.088;MQ=60;MQRankSum=0;QD=34.18;ReadPosRankSum=0.318;SOR=0.682	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121712	NC_020431.seq__121712	C	T	211444	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.825;DP=1119932;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.11;ReadPosRankSum=0.574;SOR=0.569	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121803	NC_020431.seq__121803	G	A	1476240	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.998;DP=1123125;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=30.73;ReadPosRankSum=-0.092;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121817	NC_020431.seq__121817	A	C	5196070	.	AC=0;AF=0.186;AN=2;BaseQRankSum=0.626;DP=1127332;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=142;MLEAF=0.186;MQ=60;MQRankSum=0;QD=33.52;ReadPosRankSum=0.126;SOR=0.672	GT:AD:DP:GQ:PL	"0/0:1674,0:1674:99:0,120,1800"
NC_020431.seq	121878	NC_020431.seq__121878	C	A	27728000	.	AC=2;AF=0.531;AN=2;BaseQRankSum=0.41;DP=1170381;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=33.54;ReadPosRankSum=0.068;SOR=0.661	GT:AD:DP:GQ:PL	"1/1:16,1708:1724:99:65204,4563,0"
NC_020431.seq	121910	NC_020431.seq__121910	C	T	151141	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.247;DP=1146666;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=5.61;QD=27.63;ReadPosRankSum=1.3;SOR=0.686	GT:AD:DP:GQ:PL	"0/0:1717,0:1717:99:0,120,1800"
NC_020431.seq	121935	NC_020431.seq__121935	A	C	248100	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.14;DP=1146982;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.066;QD=31.04;ReadPosRankSum=1.37;SOR=0.815	GT:AD:DP:GQ:PL	"0/0:1717,0:1717:99:0,120,1800"
NC_020431.seq	121989	NC_020431.seq__121989	G	A	222021	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.576;DP=1146865;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=24.95;ReadPosRankSum=0.91;SOR=0.492	GT:AD:DP:GQ:PL	"0/0:1717,0:1717:99:0,120,1800"
NC_020431.seq	122058	NC_020431.seq__122058	G	T	159901	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.61;DP=1146719;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.17;QD=29.78;ReadPosRankSum=-0.045;SOR=0.723	GT:AD:DP:GQ:PL	"0/0:1717,0:1717:99:0,120,1800"
NC_020431.seq	122081	NC_020431.seq__122081	T	G	186170	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.13;DP=1146734;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.43;ReadPosRankSum=0.325;SOR=0.598	GT:AD:DP:GQ:PL	"0/0:1717,0:1717:99:0,120,1800"
NC_020431.seq	122117	NC_020431.seq__122117	A	C	575807	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.061;DP=1161275;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=27.46;ReadPosRankSum=1.25;SOR=0.535	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	122152	NC_020431.seq__122152	G	A	54963	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.599;DP=1161359;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.14;ReadPosRankSum=1.64;SOR=0.321	GT:AD:DP:GQ:PL	"0/0:1771,0:1771:99:0,120,1800"
NC_020431.seq	122161	NC_020431.seq__122161	G	T	27416100	.	AC=2;AF=0.531;AN=2;BaseQRankSum=0.764;DP=1172673;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=31.15;ReadPosRankSum=0.256;SOR=0.59	GT:AD:DP:GQ:PL	"1/1:16,1777:1793:99:65545,4711,0"
NC_020431.seq	122233	NC_020431.seq__122233	A	C	945179	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.738;DP=1157624;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.32;ReadPosRankSum=0.4;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	122257	NC_020431.seq__122257	A	C	89470	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.91;DP=1157450;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.49;ReadPosRankSum=0.868;SOR=0.457	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	122258	NC_020431.seq__122258	T	G	9861110	.	AC=0;AF=0.188;AN=2;BaseQRankSum=1.11;DP=1155002;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=144;MLEAF=0.188;MQ=60;MQRankSum=0;QD=33.96;ReadPosRankSum=0.544;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	122268	NC_020431.seq__122268	G	A	155612	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.016;DP=1154731;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.014;QD=27.64;ReadPosRankSum=-0.631;SOR=0.827	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	122316	NC_020431.seq__122316	C	T	114123	.	AC=0;AF=0.006545;AN=2;BaseQRankSum=-0.891;DP=1154462;ExcessHet=0.0001;FS=0;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=0.006545;MQ=60;MQRankSum=0;QD=33.34;ReadPosRankSum=-0.022;SOR=0.664	GT:AD:DP:GQ:PL	"0/0:1786,0:1786:99:0,120,1800"
NC_020431.seq	122328	NC_020431.seq__122328	T	C	32079000	.	AC=2;AF=0.618;AN=2;BaseQRankSum=-0.502;DP=1186200;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=472;MLEAF=0.618;MQ=60;MQRankSum=0;QD=31.16;ReadPosRankSum=0.031;SOR=0.648	GT:AD:DP:GQ:PL	"1/1:4,1873:1877:99:68973,5504,0"
NC_020431.seq	122351	NC_020431.seq__122351	G	A	124115	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.384;DP=1159405;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.29;ReadPosRankSum=0.501;SOR=0.471	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122372	NC_020431.seq__122372	C	T	171661	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.011;DP=1159298;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.033;QD=26.55;ReadPosRankSum=-1.281;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122375	NC_020431.seq__122375	A	C	49968	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.48;DP=1159216;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.25;ReadPosRankSum=-0.591;SOR=0.32	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122434	NC_020431.seq__122434	G	A	826789	.	AC=0;AF=0.024;AN=2;BaseQRankSum=0.644;DP=1159787;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=30.21;ReadPosRankSum=-0.604;SOR=0.79	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122448	NC_020431.seq__122448	G	A	273418	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.47;DP=1158597;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.42;ReadPosRankSum=0.655;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122483	NC_020431.seq__122483	T	G	1754970	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.56;DP=1159517;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=24.41;ReadPosRankSum=0.53;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122484	NC_020431.seq__122484	A	C	426858	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.81;DP=1156328;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.063;QD=31.95;ReadPosRankSum=-0.043;SOR=0.601	GT:AD:DP:GQ:PL	"0/0:1796,0:1796:99:0,120,1800"
NC_020431.seq	122529	NC_020431.seq__122529	T	C	28298200	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.482;DP=1168033;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=26.98;ReadPosRankSum=0.098;SOR=0.746	GT:AD:DP:GQ:PL	"1/1:11,1769:1783:99:66691,4955,0"
NC_020431.seq	122566	NC_020431.seq__122566	A	G	27684400	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.367;DP=1167850;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=25.24;ReadPosRankSum=-0.019;SOR=0.695	GT:AD:DP:GQ:PL	"1/1:9,1822:1831:99:68340,5155,0"
NC_020431.seq	122588	NC_020431.seq__122588	T	G	1731840	.	AC=0;AF=0.031;AN=2;BaseQRankSum=0.898;DP=1136045;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.21;ReadPosRankSum=0.672;SOR=0.652	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122655	NC_020431.seq__122655	T	C	113358	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.29;DP=1131102;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=22.93;ReadPosRankSum=0.907;SOR=0.418	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122697	NC_020431.seq__122697	G	A	90210	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.365;DP=1131046;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.66;ReadPosRankSum=-1.144;SOR=0.658	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122779	NC_020431.seq__122779	G	A	5170730	.	AC=0;AF=0.099;AN=2;BaseQRankSum=0.715;DP=1135363;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=76;MLEAF=0.099;MQ=60;MQRankSum=0;QD=33.65;ReadPosRankSum=-0.008;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122858	NC_020431.seq__122858	A	C	1254590	.	AC=0;AF=0.024;AN=2;BaseQRankSum=1.03;DP=1130215;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=33.34;ReadPosRankSum=0.019;SOR=0.661	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122868	NC_020431.seq__122868	T	G	300016	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.72;DP=1129385;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.064;QD=31.16;ReadPosRankSum=1.49;SOR=0.694	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122890	NC_020431.seq__122890	C	T	425904	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=5.64;DP=1128699;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=28.25;ReadPosRankSum=1.37;SOR=0.742	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122909	NC_020431.seq__122909	C	T	106638	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.53;DP=1128179;ExcessHet=0;FS=2.158;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005236;MQ=59.99;MQRankSum=5.66;QD=31.61;ReadPosRankSum=1.87;SOR=0.627	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122936	NC_020431.seq__122936	C	T	143844	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.095;DP=1127703;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.29;ReadPosRankSum=-2.32;SOR=0.701	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122963	NC_020431.seq__122963	C	T	88206	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.162;DP=1127654;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.45;ReadPosRankSum=0.414;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	122994	NC_020431.seq__122994	C	A	141428	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.05;DP=1127483;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=31.82;ReadPosRankSum=-0.222;SOR=0.642	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123043	NC_020431.seq__123043	T	C	179049	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.17;DP=1127905;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.006;QD=31.06;ReadPosRankSum=1.17;SOR=0.439	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123057	NC_020431.seq__123057	A	C	157723	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.19;DP=1128006;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.99;ReadPosRankSum=0.345;SOR=0.478	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123060	NC_020431.seq__123060	T	C	295692	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.92;DP=1128185;ExcessHet=0;FS=0;InbreedingCoeff=0.9997;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.66;ReadPosRankSum=2.93;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123062	NC_020431.seq__123062	C	T	49576	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.33;DP=1128286;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9849;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.74;ReadPosRankSum=0.688;SOR=0.762	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123087	NC_020431.seq__123087	T	G	202973	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.789;DP=1127943;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9961;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.054;QD=31.72;ReadPosRankSum=1.65;SOR=0.537	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123130	NC_020431.seq__123130	A	C	158936	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.991;DP=1128069;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.98;ReadPosRankSum=-0.622;SOR=0.468	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123138	NC_020431.seq__123138	C	T	405654	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.745;DP=1128760;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=-1.01;SOR=0.744	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123147	NC_020431.seq__123147	A	G	191239	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.55;DP=1128736;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.19;ReadPosRankSum=-0.856;SOR=0.471	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123149	NC_020431.seq__123149	G	A	219606	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.06;DP=1129000;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.109;QD=33.33;ReadPosRankSum=-0.305;SOR=0.812	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123151	NC_020431.seq__123151	G	A	1154570	.	AC=0;AF=0.018;AN=2;BaseQRankSum=0.158;DP=1130206;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=14;MLEAF=0.018;MQ=60;MQRankSum=0;QD=28.49;ReadPosRankSum=-0.401;SOR=0.629	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123154	NC_020431.seq__123154	A	C	1405850	.	AC=0;AF=0.026;AN=2;BaseQRankSum=2.16;DP=1132646;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=20;MLEAF=0.026;MQ=60;MQRankSum=0;QD=27.13;ReadPosRankSum=0.729;SOR=0.702	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123196	NC_020431.seq__123196	C	T	47089	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.403;DP=1131064;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=30.3;ReadPosRankSum=-0.627;SOR=0.539	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123198	NC_020431.seq__123198	A	C	415570	.	AC=0;AF=0.016;AN=2;BaseQRankSum=2.04;DP=1131428;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.57;ReadPosRankSum=-0.211;SOR=0.657	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123205	NC_020431.seq__123205	A	C	84860	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.108;DP=1131203;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.76;ReadPosRankSum=0.956;SOR=0.616	GT:AD:DP:GQ:PL	"0/0:1732,0:1732:99:0,120,1800"
NC_020431.seq	123210	NC_020431.seq__123210	T	C	27299400	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.588;DP=1168573;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.58;ReadPosRankSum=0.167;SOR=0.673	GT:AD:DP:GQ:PL	"1/1:11,1759:1770:99:65348,4846,0"
NC_020431.seq	123242	NC_020431.seq__123242	T	C	97075	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.103;DP=1170271;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.5;ReadPosRankSum=-0.971;SOR=0.415	GT:AD:DP:GQ:PL	"0/0:1753,0:1753:99:0,120,1800"
NC_020431.seq	123264	NC_020431.seq__123264	A	G	186228	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.14;DP=1170170;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.998;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=32.4;ReadPosRankSum=0.464;SOR=0.706	GT:AD:DP:GQ:PL	"0/0:1753,0:1753:99:0,120,1800"
NC_020431.seq	123303	NC_020431.seq__123303	C	T	192600	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.596;DP=1170776;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.83;ReadPosRankSum=0.817;SOR=0.767	GT:AD:DP:GQ:PL	"0/0:1753,0:1753:99:0,120,1800"
NC_020431.seq	123333	NC_020431.seq__123333	A	T	26555900	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.677;DP=1190886;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=31.52;ReadPosRankSum=0.141;SOR=0.668	GT:AD:DP:GQ:PL	"1/1:13,1723:1743:99:59649,4660,0"
NC_020431.seq	123383	NC_020431.seq__123383	T	G	210550	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.01;DP=1164639;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.69;ReadPosRankSum=1.01;SOR=0.628	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123402	NC_020431.seq__123402	T	"A,G"	1885760	.	"AC=0,0;AF=0.01,0.025;AN=2;BaseQRankSum=1.03;DP=1166100;ExcessHet=-0;FS=0;InbreedingCoeff=0.9616;MLEAC=8,19;MLEAF=0.01,0.025;MQ=60;MQRankSum=0;QD=27.46;ReadPosRankSum=0.613;SOR=0.726"	GT:AD:DP:GQ:PL	"0/0:1754,0,0:1754:99:0,120,1800,120,1800,1800"
NC_020431.seq	123405	NC_020431.seq__123405	T	C	163590	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.61;DP=1164172;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.02;ReadPosRankSum=-0.063;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123437	NC_020431.seq__123437	T	C	426369	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=0.157;DP=1163890;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0.009;QD=29.85;ReadPosRankSum=-0.068;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123440	NC_020431.seq__123440	G	A	979590	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.291;DP=1164266;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=-0.028;QD=30.44;ReadPosRankSum=0.95;SOR=0.599	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123475	NC_020431.seq__123475	A	G	531347	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.264;DP=1164915;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=31.35;ReadPosRankSum=0.416;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123495	NC_020431.seq__123495	T	"A,G"	782212	.	"AC=0,0;AF=0.006545,0.01;AN=2;BaseQRankSum=0.275;DP=1164787;ExcessHet=0;FS=0;InbreedingCoeff=0.9217;MLEAC=5,8;MLEAF=0.006545,0.01;MQ=60;MQRankSum=0;QD=30.85;ReadPosRankSum=-0.623;SOR=0.694"	GT:AD:DP:GQ:PL	"0/0:1754,0,0:1754:99:0,120,1800,120,1800,1800"
NC_020431.seq	123503	NC_020431.seq__123503	A	G	1140720	.	AC=0;AF=0.024;AN=2;BaseQRankSum=-0.424;DP=1164704;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=18;MLEAF=0.024;MQ=60;MQRankSum=0;QD=36.36;ReadPosRankSum=0.242;SOR=0.684	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123509	NC_020431.seq__123509	A	G	216045	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.27;DP=1164279;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.19;ReadPosRankSum=-0.967;SOR=0.451	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123563	NC_020431.seq__123563	T	C	252682	.	AC=0;AF=0.005263;AN=2;BaseQRankSum=0.49;DP=1163981;ExcessHet=0;FS=0;InbreedingCoeff=0.9995;MLEAC=4;MLEAF=0.005263;MQ=40.09;MQRankSum=0.031;QD=34.29;ReadPosRankSum=0.515;SOR=0.695	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123603	NC_020431.seq__123603	T	G	103445	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.77;DP=1163517;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=34.83;ReadPosRankSum=-1.163;SOR=0.643	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123659	NC_020431.seq__123659	T	C	167857	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.12;DP=1163627;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.52;ReadPosRankSum=0.281;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123680	NC_020431.seq__123680	C	T	248847	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.272;DP=1163682;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.034;QD=30.63;ReadPosRankSum=1.59;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1754,0:1754:99:0,120,1800"
NC_020431.seq	123688	NC_020431.seq__123688	G	A	19193000	.	AC=2;AF=0.534;AN=2;BaseQRankSum=0.34;DP=1159255;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.07;ReadPosRankSum=0.512;SOR=0.717	GT:AD:DP:GQ:PL	"1/1:19,1649:1687:99:46747,4442,0"
NC_020431.seq	123772	NC_020431.seq__123772	G	A	28416800	.	AC=2;AF=0.542;AN=2;BaseQRankSum=0.262;DP=1166197;ExcessHet=-0;FS=0;InbreedingCoeff=0.9998;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=29.77;ReadPosRankSum=-0.053;SOR=0.701	GT:AD:DP:GQ:PL	"1/1:14,1797:1811:99:66887,4868,0"
NC_020431.seq	123838	NC_020431.seq__123838	G	A	83597	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.346;DP=1158262;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.04;ReadPosRankSum=0.173;SOR=0.147	GT:AD:DP:GQ:PL	"0/0:1759,0:1759:99:0,120,1800"
NC_020431.seq	123856	NC_020431.seq__123856	T	G	180559	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.519;DP=1158403;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=33.25;ReadPosRankSum=0.676;SOR=0.743	GT:AD:DP:GQ:PL	"0/0:1759,0:1759:99:0,120,1800"
NC_020431.seq	123873	NC_020431.seq__123873	A	T	43179800	.	AC=2;AF=1;AN=2;BaseQRankSum=2.19;DP=1195791;ExcessHet=3.0103;FS=0;InbreedingCoeff=-0;MLEAC=764;MLEAF=1;MQ=60;MQRankSum=0;QD=26.25;ReadPosRankSum=0.626;SOR=0.758	GT:AD:DP:GQ:PL	"1/1:3,1674:1677:99:49280,4962,0"
NC_020431.seq	123895	NC_020431.seq__123895	A	C	316352	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.74;DP=1140275;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=27.39;ReadPosRankSum=0.927;SOR=0.52	GT:AD:DP:GQ:PL	"0/0:1730,0:1730:99:0,120,1800"
NC_020431.seq	123903	NC_020431.seq__123903	T	G	391808	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.71;DP=1140203;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=31.56;ReadPosRankSum=0.424;SOR=0.345	GT:AD:DP:GQ:PL	"0/0:1730,0:1730:99:0,120,1800"
NC_020431.seq	123905	NC_020431.seq__123905	T	G	1192180	.	AC=0;AF=0.021;AN=2;BaseQRankSum=0.737;DP=1140170;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=16;MLEAF=0.021;MQ=60;MQRankSum=0;QD=28.3;ReadPosRankSum=0.988;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1730,0:1730:99:0,120,1800"
NC_020431.seq	123929	NC_020431.seq__123929	G	A	486786	.	AC=0;AF=0.013;AN=2;BaseQRankSum=0.249;DP=1140172;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=33.57;ReadPosRankSum=-0.124;SOR=0.794	GT:AD:DP:GQ:PL	"0/0:1730,0:1730:99:0,120,1800"
NC_020431.seq	123981	NC_020431.seq__123981	T	"A,G"	3223820	.	"AC=0,0;AF=0.026,0.037;AN=2;BaseQRankSum=0.814;DP=1141039;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=20,28;MLEAF=0.026,0.037;MQ=60;MQRankSum=0;QD=33.09;ReadPosRankSum=0.343;SOR=0.675"	GT:AD:DP:GQ:PL	"0/0:1730,0,0:1730:99:0,120,1800,120,1800,1800"
NC_020431.seq	123985	NC_020431.seq__123985	T	G	26702800	.	AC=2;AF=0.508;AN=2;BaseQRankSum=1.44;DP=1162423;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=388;MLEAF=0.508;MQ=60;MQRankSum=0;QD=30;ReadPosRankSum=0.56;SOR=0.664	GT:AD:DP:GQ:PL	"1/1:16,1826:1842:99:66610,4902,0"
NC_020431.seq	124003	NC_020431.seq__124003	A	C	236113	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.969;DP=1114167;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=6.49;QD=28.35;ReadPosRankSum=2.02;SOR=0.739	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124017	NC_020431.seq__124017	G	A	229880	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.011;DP=1113952;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.418;QD=30.75;ReadPosRankSum=0.293;SOR=0.381	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124094	NC_020431.seq__124094	A	T	324649	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.51;DP=1113747;ExcessHet=0;FS=0;InbreedingCoeff=0.998;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=30.08;ReadPosRankSum=0.892;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124126	NC_020431.seq__124126	A	C	237040	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.129;DP=1112711;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.075;QD=30.84;ReadPosRankSum=0.025;SOR=0.557	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124138	NC_020431.seq__124138	G	A	210970	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.716;DP=1112537;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=28.89;ReadPosRankSum=-0.795;SOR=0.523	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124175	NC_020431.seq__124175	A	C	2311370	.	AC=0;AF=0.042;AN=2;BaseQRankSum=0.659;DP=1112117;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=32;MLEAF=0.042;MQ=60;MQRankSum=0;QD=29.51;ReadPosRankSum=0.083;SOR=0.566	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124302	NC_020431.seq__124302	C	T	283453	.	AC=0;AF=0.01;AN=2;BaseQRankSum=-0.532;DP=1111577;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=31.47;ReadPosRankSum=0.683;SOR=0.518	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	124328	NC_020431.seq__124328	G	C	28935700	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.074;DP=1131930;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=28.14;ReadPosRankSum=-0.095;SOR=0.687	GT:AD:DP:GQ:PL	"1/1:3,1690:1693:99:75159,5050,0"
NC_020431.seq	124341	NC_020431.seq__124341	A	G	8523780	.	AC=2;AF=0.168;AN=2;BaseQRankSum=0.42;DP=1129399;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=128;MLEAF=0.168;MQ=60;MQRankSum=0;QD=27.99;ReadPosRankSum=-0.022;SOR=0.72	GT:AD:DP:GQ:PL	"1/1:37,1659:1696:99:61663,3686,0"
NC_020431.seq	124422	NC_020431.seq__124422	T	G	27928200	.	AC=2;AF=0.534;AN=2;BaseQRankSum=1.21;DP=1132422;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=0.438;SOR=0.535	GT:AD:DP:GQ:PL	"1/1:7,1663:1670:99:62212,4866,0"
NC_020431.seq	124495	NC_020431.seq__124495	G	T	27885000	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.184;DP=1124609;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=-0.131;SOR=0.652	GT:AD:DP:GQ:PL	"1/1:2,1681:1683:99:62851,4968,0"
NC_020431.seq	124528	NC_020431.seq__124528	G	A	274492	.	AC=0;AF=0.01;AN=2;BaseQRankSum=0.634;DP=1113112;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=8;MLEAF=0.01;MQ=60;MQRankSum=0;QD=32.95;ReadPosRankSum=0.863;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124555	NC_020431.seq__124555	C	T	127231	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.173;DP=1113159;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=4.66;QD=29.26;ReadPosRankSum=2.15;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124629	NC_020431.seq__124629	T	G	168468	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.94;DP=1113313;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=29.8;ReadPosRankSum=0.516;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124657	NC_020431.seq__124657	A	G	322549	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.824;DP=1113249;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.6;ReadPosRankSum=0.179;SOR=0.542	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124678	NC_020431.seq__124678	G	A	1846330	.	AC=0;AF=0.031;AN=2;BaseQRankSum=-0.223;DP=1117975;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=24;MLEAF=0.031;MQ=60;MQRankSum=0;QD=33.68;ReadPosRankSum=1.05;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124695	NC_020431.seq__124695	T	C	1757580	.	AC=0;AF=0.037;AN=2;BaseQRankSum=-0.491;DP=1108905;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=27.33;ReadPosRankSum=0.451;SOR=0.618	GT:AD:DP:GQ:PL	"0/0:1677,0:1677:99:0,120,1800"
NC_020431.seq	124727	NC_020431.seq__124727	T	C	28117600	.	AC=2;AF=0.538;AN=2;BaseQRankSum=-0.246;DP=1134017;ExcessHet=-0;FS=0;InbreedingCoeff=0.9968;MLEAC=411;MLEAF=0.538;MQ=60;MQRankSum=0;QD=25.72;ReadPosRankSum=0.181;SOR=0.71	GT:AD:DP:GQ:PL	"1/1:12,1651:1663:99:61422,4514,0"
NC_020431.seq	124749	NC_020431.seq__124749	T	C	682314	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.629;DP=1122189;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=27.8;ReadPosRankSum=0.592;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	124761	NC_020431.seq__124761	C	T	324903	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=1.02;DP=1117593;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=31.04;QD=33.28;ReadPosRankSum=0.816;SOR=0.681	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	124785	NC_020431.seq__124785	G	A	1023570	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.329;DP=1117366;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=28.04;ReadPosRankSum=-0.008;SOR=0.713	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	124824	NC_020431.seq__124824	C	T	356651	.	AC=0;AF=0.003927;AN=2;BaseQRankSum=5.29;DP=1117443;ExcessHet=0.0085;FS=0;InbreedingCoeff=0.6645;MLEAC=3;MLEAF=0.003927;MQ=60;MQRankSum=0;QD=29.24;ReadPosRankSum=-0.135;SOR=0.68	GT:AD:DP:GQ:PL	"0/0:1649,0:1649:99:0,120,1800"
NC_020431.seq	124831	NC_020431.seq__124831	A	G	27975300	.	AC=2;AF=0.542;AN=2;BaseQRankSum=-0.166;DP=1116795;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=414;MLEAF=0.542;MQ=60;MQRankSum=0;QD=35.47;ReadPosRankSum=0.128;SOR=0.618	GT:AD:DP:GQ:PL	"1/1:12,1631:1643:99:61508,4466,0"
NC_020431.seq	124892	NC_020431.seq__124892	C	T	472609	.	AC=0;AF=0.007853;AN=2;BaseQRankSum=2.08;DP=1095327;ExcessHet=0;FS=0;InbreedingCoeff=0.9987;MLEAC=6;MLEAF=0.007853;MQ=60;MQRankSum=-0.021;QD=31.86;ReadPosRankSum=-0.236;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	124962	NC_020431.seq__124962	A	T	268669	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=3.07;DP=1093860;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.97;ReadPosRankSum=-0.626;SOR=0.757	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125009	NC_020431.seq__125009	C	T	238787	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.2;DP=1093985;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.082;QD=24.94;ReadPosRankSum=-0.311;SOR=0.804	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125010	NC_020431.seq__125010	C	A	161475	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=4.43;DP=1093942;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.014;QD=26.99;ReadPosRankSum=0.38;SOR=0.488	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125016	NC_020431.seq__125016	A	C	913112	.	AC=0;AF=0.013;AN=2;BaseQRankSum=1.33;DP=1095015;ExcessHet=0;FS=0;InbreedingCoeff=0.7973;MLEAC=10;MLEAF=0.013;MQ=60;MQRankSum=0;QD=29.84;ReadPosRankSum=0.143;SOR=0.763	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125025	NC_020431.seq__125025	T	G	1686450	.	AC=0;AF=0.037;AN=2;BaseQRankSum=1.53;DP=1096294;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=25.49;ReadPosRankSum=0.352;SOR=0.66	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125034	NC_020431.seq__125034	T	G	310528	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=2.15;DP=1087553;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=32.25;ReadPosRankSum=0.685;SOR=0.699	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125037	NC_020431.seq__125037	A	T	1028430	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.382;DP=1088087;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=33.63;ReadPosRankSum=-0.319;SOR=0.698	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125071	NC_020431.seq__125071	C	T	167458	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.51;DP=1087556;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.027;QD=25.64;ReadPosRankSum=1.33;SOR=0.653	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125093	NC_020431.seq__125093	C	T	372714	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=-0.392;DP=1087883;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=3.84;QD=34.35;ReadPosRankSum=0.271;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:1627,0:1627:99:0,120,1800"
NC_020431.seq	125107	NC_020431.seq__125107	C	T	31781900	.	AC=2;AF=0.537;AN=2;BaseQRankSum=0.054;DP=1111451;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=28.7;ReadPosRankSum=-0.007;SOR=0.686	GT:AD:DP:GQ:PGT:PID:PL	"1/1:4,1694:1698:99:1|1:125107_C_T:76109,4893,0"
NC_020431.seq	125111	NC_020431.seq__125111	G	A	30970300	.	AC=2;AF=0.534;AN=2;BaseQRankSum=-0.058;DP=1109593;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=408;MLEAF=0.534;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=0.095;SOR=0.684	GT:AD:DP:GQ:PGT:PID:PL	"1/1:4,1676:1680:99:1|1:125107_C_T:75723,4857,0"
NC_020431.seq	125113	NC_020431.seq__125113	G	A	228928	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.444;DP=1103111;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.089;QD=31.22;ReadPosRankSum=0.577;SOR=0.692	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	125132	NC_020431.seq__125132	A	G	99089	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.618;DP=1103051;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.38;ReadPosRankSum=0.201;SOR=0.61	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	125135	NC_020431.seq__125135	T	G	835323	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.267;DP=1103560;ExcessHet=0;FS=0;InbreedingCoeff=0.9998;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=29.88;ReadPosRankSum=0.914;SOR=0.697	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	125200	NC_020431.seq__125200	T	G	3440820	.	AC=0;AF=0.092;AN=2;BaseQRankSum=-0.191;DP=1098764;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=70;MLEAF=0.092;MQ=60;MQRankSum=0;QD=33.21;ReadPosRankSum=0.227;SOR=0.638	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	125209	NC_020431.seq__125209	A	G	140093	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.19;DP=1099179;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9999;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=34.09;ReadPosRankSum=-0.663;SOR=0.746	GT:AD:DP:GQ:PL	"0/0:1695,0:1695:99:0,120,1800"
NC_020431.seq	125224	NC_020431.seq__125224	A	G	27588300	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.543;DP=1104265;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=34.08;ReadPosRankSum=0.045;SOR=0.696	GT:AD:DP:GQ:PL	"1/1:2,1704:1706:99:62860,5037,0"
NC_020431.seq	125275	NC_020431.seq__125275	A	C	2110650	.	AC=0;AF=0.037;AN=2;BaseQRankSum=2.13;DP=1098313;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=25.28;ReadPosRankSum=0.112;SOR=0.626	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125322	NC_020431.seq__125322	G	A	2150800	.	AC=0;AF=0.037;AN=2;BaseQRankSum=0.426;DP=1097723;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=28;MLEAF=0.037;MQ=60;MQRankSum=0;QD=25.85;ReadPosRankSum=-0.027;SOR=0.641	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125337	NC_020431.seq__125337	A	G	186443	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.787;DP=1087118;ExcessHet=0.0028;FS=2.081;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=26.97;ReadPosRankSum=-0.955;SOR=0.584	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125344	NC_020431.seq__125344	G	C	187165	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=3.44;DP=1087141;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.019;QD=31.32;ReadPosRankSum=0.46;SOR=0.614	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125352	NC_020431.seq__125352	G	T	3680230	.	AC=0;AF=0.094;AN=2;BaseQRankSum=0.044;DP=1087879;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=72;MLEAF=0.094;MQ=60;MQRankSum=0;QD=31.48;ReadPosRankSum=-0.097;SOR=0.654	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125355	NC_020431.seq__125355	G	T	187945	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=2.39;DP=1088261;ExcessHet=0.0028;FS=0;InbreedingCoeff=1;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=27.54;ReadPosRankSum=-0.022;SOR=0.577	GT:AD:DP:GQ:PL	"0/0:1672,0:1672:99:0,120,1800"
NC_020431.seq	125410	NC_020431.seq__125410	G	A	27303500	.	AC=2;AF=0.539;AN=2;BaseQRankSum=-0.443;DP=1103767;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=412;MLEAF=0.539;MQ=60;MQRankSum=0;QD=32.01;ReadPosRankSum=0.122;SOR=0.713	GT:AD:DP:GQ:PL	"1/1:5,1744:1749:99:64222,5072,0"
NC_020431.seq	125453	NC_020431.seq__125453	G	A	156782	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-1.664;DP=1041832;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.016;QD=27.05;ReadPosRankSum=0.979;SOR=0.452	GT:AD:DP:GQ:PL	"0/0:1534,0:1534:99:0,120,1800"
NC_020431.seq	125493	NC_020431.seq__125493	C	T	2621450	.	AC=0;AF=0.058;AN=2;BaseQRankSum=0.049;DP=1040904;ExcessHet=0;FS=0;InbreedingCoeff=0.9993;MLEAC=44;MLEAF=0.058;MQ=60;MQRankSum=0;QD=34.6;ReadPosRankSum=0.048;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:1534,0:1534:99:0,120,1800"
NC_020431.seq	125502	NC_020431.seq__125502	T	G	304096	.	AC=0;AF=0.005236;AN=2;BaseQRankSum=4.69;DP=1038602;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=0.005236;MQ=60;MQRankSum=0;QD=29.88;ReadPosRankSum=1.29;SOR=0.63	GT:AD:DP:GQ:PL	"0/0:1534,0:1534:99:0,120,1800"
NC_020431.seq	125505	NC_020431.seq__125505	G	A	174865	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=0.962;DP=1038153;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0.046;QD=31.58;ReadPosRankSum=-0.053;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1534,0:1534:99:0,120,1800"
NC_020431.seq	125568	NC_020431.seq__125568	T	A	498078	.	AC=0;AF=0.016;AN=2;BaseQRankSum=0.918;DP=1037907;ExcessHet=0;FS=0;InbreedingCoeff=0.9999;MLEAC=12;MLEAF=0.016;MQ=60;MQRankSum=0;QD=30.84;ReadPosRankSum=-0.375;SOR=0.881	GT:AD:DP:GQ:PL	"0/0:1534,0:1534:99:0,120,1800"
NC_020431.seq	125643	NC_020431.seq__125643	A	G	25749700	.	AC=2;AF=0.531;AN=2;BaseQRankSum=-0.65;DP=1055334;ExcessHet=0;FS=0;InbreedingCoeff=1;MLEAC=406;MLEAF=0.531;MQ=60;MQRankSum=0;QD=34.73;ReadPosRankSum=0.036;SOR=0.712	GT:AD:DP:GQ:PL	"1/1:7,1573:1580:99:57747,4465,0"
NC_020431.seq	125650	NC_020431.seq__125650	C	T	160251	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=1.46;DP=1029902;ExcessHet=0.0028;FS=2.3;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=-0.2;QD=34.94;ReadPosRankSum=0.618;SOR=0.831	GT:AD:DP:GQ:PL	"0/0:1507,0:1507:99:0,120,1800"
NC_020431.seq	125651	NC_020431.seq__125651	G	A	147864	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=-0.743;DP=1029694;ExcessHet=0.0028;FS=0;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=0.002618;MQ=59.99;MQRankSum=5.97;QD=27.7;ReadPosRankSum=-0.977;SOR=0.666	GT:AD:DP:GQ:PL	"0/0:1507,0:1507:99:0,120,1800"
NC_020431.seq	125685	NC_020431.seq__125685	G	C	25666500	.	AC=2;AF=0.537;AN=2;BaseQRankSum=-0.308;DP=1022509;ExcessHet=-0;FS=0;InbreedingCoeff=1;MLEAC=410;MLEAF=0.537;MQ=60;MQRankSum=0;QD=27.75;ReadPosRankSum=0.146;SOR=0.66	GT:AD:DP:GQ:PL	"1/1:7,1502:1509:99:57347,4272,0"
NC_020431.seq	125770	NC_020431.seq__125770	T	G	1002.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-17.06;DP=952731;ExcessHet=3.0103;FS=13.782;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=-0.153;QD=2.46;ReadPosRankSum=3.73;SOR=1.203	GT:AD:DP:GQ:PL	"0/0:1508,0:1508:99:0,120,1800"
NC_020431.seq	125771	NC_020431.seq__125771	T	A	448.79	.	AC=0;AF=0.001309;AN=2;BaseQRankSum=-13.89;DP=952706;ExcessHet=3.0103;FS=13.951;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=0.001309;MQ=60;MQRankSum=-0.231;QD=1.15;ReadPosRankSum=0.462;SOR=1.074	GT:AD:DP:GQ:PL	"0/0:1508,0:1508:99:0,120,1800"
NC_020431.seq	125772	NC_020431.seq__125772	G	A	9577.99	.	AC=0;AF=0.002618;AN=2;BaseQRankSum=12.22;DP=952132;ExcessHet=3.016;FS=9.828;InbreedingCoeff=-0.0026;MLEAC=2;MLEAF=0.002618;MQ=60;MQRankSum=0;QD=8.74;ReadPosRankSum=4.33;SOR=1.078	GT:AD:DP:GQ:PL	"0/0:1508,0:1508:99:0,120,1800"
NC_020431.seq	125785	NC_020431.seq__125785	G	A	61910.6	.	AC=0;AF=0.9;AN=0;BaseQRankSum=1.53;DP=840076;ExcessHet=3.0103;FS=44.163;MLEAC=9;MLEAF=0.9;MQ=2.7;MQRankSum=0;QD=28.74;ReadPosRankSum=-1.858;SOR=4.047	GT:AD:DP:PL	"./.:1387,0:1387:0,0,0"
NC_020432.seq	127007	chr01:107017	G	A	3330000 	.	AC=28;AF=0.037;AN=764;BaseQRankSum=-5.380e-01;DP=1561563;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=28;MLEAF=0.037;MQ=60.00;MQRankSum=-1.410e-01;QD=30.60;ReadPosRankSum=0.342;SOR=0.506	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020433.seq	127129	chr01:106895	A	C	238432 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.77;DP=1554337;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.000e-03;QD=29.23;ReadPosRankSum=-7.020e-01;SOR=0.710	GT:AD:DP:GQ:PL	"0/0:2789,0:2789:99:0,120,1800"
NC_020434.seq	128330	chr01:105694	T	C	1630000 	.	AC=14;AF=0.018;AN=764;BaseQRankSum=1.44;DP=1485783;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=14;MLEAF=0.018;MQ=60.00;MQRankSum=-6.000e-03;QD=28.71;ReadPosRankSum=2.56;SOR=0.730	GT:AD:DP:GQ:PL	"0/0:2161,0:2161:99:0,120,1800"
NC_020435.seq	128541	chr01:105483	A	C	310590 	.	AC=6;AF=7.853e-03;AN=764;BaseQRankSum=-8.200e-01;DP=1507734;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=6;MLEAF=7.853e-03;MQ=60.00;MQRankSum=0.00;QD=26.18;ReadPosRankSum=0.109;SOR=0.680	GT:AD:DP:GQ:PL	"0/0:2128,0:2128:99:0,120,1800"
NC_020436.seq	130113	chr01:103911	T	G	212272 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=6.03;DP=1507296;ExcessHet=0.0028;FS=1.080;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-7.000e-03;QD=34.57;ReadPosRankSum=-6.260e-01;SOR=0.594	GT:AD:DP:GQ:PL	"0/0:2128,0:2128:99:0,120,1800"
NC_020437.seq	131125	chr01:102899	T	C	12900000 	.	AC=128;AF=0.168;AN=764;BaseQRankSum=0.217;DP=1578649;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=128;MLEAF=0.168;MQ=60.00;MQRankSum=-2.000e-03;QD=24.46;ReadPosRankSum=0.216;SOR=0.693	GT:AD:DP:GQ:PL	"1/1:59,2683:2742:99:100298,5907,0"
NC_020438.seq	131450	chr01:102574	T	G	261854 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.52;DP=1525638;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-9.700e-02;QD=36.56;ReadPosRankSum=0.451;SOR=0.642	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020439.seq	131457	chr01:102567	T	G	277784 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=3.36;DP=1526685;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.700e-02;QD=33.81;ReadPosRankSum=0.335;SOR=0.562	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020440.seq	131550	chr01:102474	C	T	1310000 	.	AC=12;AF=0.016;AN=764;BaseQRankSum=0.085;DP=1527852;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=12;MLEAF=0.016;MQ=60.00;MQRankSum=-3.600e-02;QD=22.50;ReadPosRankSum=0.221;SOR=0.580	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020441.seq	131814	chr01:102210	T	G	9580000 	.	AC=142;AF=0.186;AN=764;BaseQRankSum=1.41;DP=1553138;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.9957;MLEAC=142;MLEAF=0.186;MQ=60.00;MQRankSum=0.00;QD=26.26;ReadPosRankSum=1.13;SOR=0.700	GT:AD:DP:GQ:PL	"0/0:2411,0:2411:99:0,120,1800"
NC_020442.seq	132013	chr01:102011	G	A	237004 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-3.280e-01;DP=1506896;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=9.58;QD=27.84;ReadPosRankSum=0.131;SOR=0.623	GT:AD:DP:GQ:PL	"0/0:2591,0:2591:99:0,120,1800"
NC_020443.seq	132516	chr01:101508	A	C	530664 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.29;DP=1503893;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-6.200e-02;QD=33.55;ReadPosRankSum=1.35;SOR=0.668	GT:AD:DP:GQ:PL	"0/0:2591,0:2591:99:0,120,1800"
NC_020444.seq	132595	chr01:101429	C	T	12000000 	.	AC=126;AF=0.165;AN=764;BaseQRankSum=-2.537e+00;DP=1534872;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.9810;MLEAC=126;MLEAF=0.165;MQ=60.00;MQRankSum=0.00;QD=28.66;ReadPosRankSum=2.03;SOR=0.624	GT:AD:DP:GQ:PL	"1/1:122,2713:2835:99:97085,3345,0"
NC_020445.seq	132644	chr01:101380	G	A	3160000 	.	AC=28;AF=0.037;AN=764;BaseQRankSum=-1.910e+00;DP=1440518;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=28;MLEAF=0.037;MQ=60.00;MQRankSum=-1.600e-02;QD=31.24;ReadPosRankSum=0.887;SOR=0.655	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020446.seq	134790	chr01:99234	C	T	530820 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.26;DP=1431663;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.9999;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-4.400e-02;QD=23.12;ReadPosRankSum=-1.840e-01;SOR=0.605	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020447.seq	135517	chr01:98507	C	A	205660 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=0.512;DP=1427540;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=2.39;QD=33.52;ReadPosRankSum=17.33;SOR=0.637	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020448.seq	135523	chr01:98501	G	T	198927 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=-1.730e+00;DP=1427540;ExcessHet=3.0103;FS=1.041;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=2.31;QD=32.66;ReadPosRankSum=18.05;SOR=0.590	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020449.seq	135524	chr01:98500	C	T	210216 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=-2.889e+00;DP=1427519;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=1.04;QD=34.48;ReadPosRankSum=18.01;SOR=0.619	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020450.seq	135525	chr01:98499	C	A	206063 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=2.30;DP=1427547;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=1.03;QD=33.57;ReadPosRankSum=17.91;SOR=0.618	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020451.seq	135662	chr01:98362	A	C	243874 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=0.158;DP=1428002;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-4.900e-02;QD=29.55;ReadPosRankSum=-1.036e+00;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020452.seq	135778	chr01:98246	T	G	5540000 	.	AC=67;AF=0.088;AN=764;BaseQRankSum=0.544;DP=1452490;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.9844;MLEAC=67;MLEAF=0.088;MQ=60.00;MQRankSum=0.00;QD=25.27;ReadPosRankSum=-1.720e-01;SOR=0.620	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020453.seq	135809	chr01:98215	A	C	640629 	.	AC=12;AF=0.016;AN=764;BaseQRankSum=0.692;DP=1407561;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=12;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=30.22;ReadPosRankSum=0.00;SOR=0.707	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020454.seq	135853	chr01:98171	A	C	464852 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=3.11;DP=1403312;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=4.37;QD=28.96;ReadPosRankSum=0.974;SOR=0.436	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020455.seq	135951	chr01:98073	T	G	1250000 	.	AC=10;AF=0.013;AN=764;BaseQRankSum=1.67;DP=1404106;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=10;MLEAF=0.013;MQ=60.00;MQRankSum=-4.000e-03;QD=29.35;ReadPosRankSum=0.599;SOR=0.730	GT:AD:DP:GQ:PL	"0/0:1990,0:1990:99:0,120,1800"
NC_020456.seq	136320	chr01:97704	T	G	80554 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.67;DP=1517989;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=30.49;ReadPosRankSum=1.63;SOR=0.393	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020457.seq	136321	chr01:97703	C	A	79146 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=0.957;DP=1517993;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=29.87;ReadPosRankSum=1.95;SOR=0.429	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020458.seq	136334	chr01:97690	A	C	314196 	.	AC=6;AF=7.853e-03;AN=764;BaseQRankSum=0.703;DP=1519253;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=6;MLEAF=7.853e-03;MQ=60.00;MQRankSum=0.00;QD=28.05;ReadPosRankSum=1.46;SOR=0.504	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020459.seq	136664	chr01:97360	A	C	216598 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=2.21;DP=1520180;ExcessHet=0.0000;FS=2.094;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=7.73;QD=33.35;ReadPosRankSum=0.561;SOR=0.437	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020460.seq	136859	chr01:97165	T	G	1399 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=-1.510e-01;DP=1523910;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=0.00;QD=0.31;ReadPosRankSum=2.02;SOR=0.626	GT:AD:DP:GQ:PL	"0/0:2445,0:2445:99:0,120,1800"
NC_020461.seq	137689	chr01:96335	T	G	293854 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.59;DP=1524913;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.012;QD=28.13;ReadPosRankSum=1.67;SOR=0.683	GT:AD:DP:GQ:PGT:PID:PL	"0/0:2445,0:2445:99:.:.:0,120,1800"
NC_020462.seq	137697	chr01:96327	G	T	42700000 	.	AC=408;AF=0.534;AN=764;BaseQRankSum=0.651;DP=1760915;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=408;MLEAF=0.534;MQ=60.00;MQRankSum=-2.000e-03;QD=24.40;ReadPosRankSum=0.479;SOR=0.624	GT:AD:DP:GQ:PGT:PID:PL	"1/1:43,3021:3066:99:.:.:113576,7636,0"
NC_020463.seq	137974	chr01:96050	T	G	296131 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.76;DP=1737531;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-2.000e-03;QD=27.64;ReadPosRankSum=0.939;SOR=0.358	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020464.seq	138051	chr01:95973	A	C	913300 	.	AC=8;AF=0.010;AN=764;BaseQRankSum=0.327;DP=1738933;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=8;MLEAF=0.010;MQ=60.00;MQRankSum=-3.000e-02;QD=28.40;ReadPosRankSum=0.550;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020465.seq	138681	chr01:95343	A	G	473454 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.81;DP=1740130;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-1.500e-02;QD=32.42;ReadPosRankSum=-4.100e-01;SOR=0.610	GT:AD:DP:GQ:PL	"0/0:3067,0:3067:99:0,120,1800"
NC_020466.seq	138764	chr01:95260	C	T	574897 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.23;DP=1743311;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=1.000e-02;QD=27.40;ReadPosRankSum=0.881;SOR=0.639	GT:AD:DP:GQ:PGT:PID:PL	"0/0:3067,0:3067:99:.:.:0,120,1800"
NC_020467.seq	138825	chr01:95199	C	T	75000000 	.	AC=764;AF=1.00;AN=764;BaseQRankSum=0.353;DP=1917255;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0000;MLEAC=764;MLEAF=1.00;MQ=60.00;MQRankSum=-1.700e-02;QD=33.34;ReadPosRankSum=1.16;SOR=0.799	GT:AD:DP:GQ:PGT:PID:PL	"1/1:0,3318:3318:99:.:.:124285,9962,0"
NC_020468.seq	138973	chr01:95051	A	C	297844 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.76;DP=1598923;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.840e-01;QD=30.28;ReadPosRankSum=-8.060e-01;SOR=0.704	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020469.seq	139393	chr01:94631	A	C	225360 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.42;DP=1598567;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.240e-01;QD=33.22;ReadPosRankSum=-2.970e-01;SOR=0.625	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020470.seq	139626	chr01:94398	A	C	450410 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=4.96;DP=1598629;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=13.87;QD=30.28;ReadPosRankSum=1.66;SOR=0.531	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020471.seq	139711	chr01:94313	A	C	1910000 	.	AC=18;AF=0.024;AN=764;BaseQRankSum=2.57;DP=1599741;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=18;MLEAF=0.024;MQ=60.00;MQRankSum=-3.000e-03;QD=25.98;ReadPosRankSum=0.756;SOR=0.712	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020472.seq	140092	chr01:93932	T	G	224002 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=4.38;DP=1592005;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=29.27;ReadPosRankSum=1.76;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:3091,0:3091:99:0,120,1800"
NC_020473.seq	140395	chr01:93629	G	A	3110000 	.	AC=26;AF=0.034;AN=764;BaseQRankSum=1.30;DP=1594569;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=26;MLEAF=0.034;MQ=60.00;MQRankSum=-5.100e-02;QD=30.83;ReadPosRankSum=0.704;SOR=0.669	GT:AD:DP:GQ:PL	"1/1:65,3324:3389:99:125023,7562,0"
NC_020474.seq	140480	chr01:93544	C	T	2630000 	.	AC=28;AF=0.037;AN=764;BaseQRankSum=-1.473e+00;DP=1586004;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=28;MLEAF=0.037;MQ=60.00;MQRankSum=-2.000e-03;QD=27.76;ReadPosRankSum=0.588;SOR=0.685	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020475.seq	140781	chr01:93243	T	G	216855 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=3.56;DP=1582189;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=28.52;ReadPosRankSum=1.15;SOR=0.541	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020476.seq	141154	chr01:92870	C	G	190705 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=0.493;DP=1582268;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0014;MLEAC=1;MLEAF=1.309e-03;MQ=59.96;MQRankSum=-8.500e-02;QD=31.12;ReadPosRankSum=4.09;SOR=0.621	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020477.seq	141209	chr01:92815	A	C	279962 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.62;DP=1582477;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.910e-01;QD=30.34;ReadPosRankSum=0.343;SOR=0.663	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020478.seq	141249	chr01:92775	A	C	1420000 	.	AC=12;AF=0.016;AN=764;BaseQRankSum=3.85;DP=1582404;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=12;MLEAF=0.016;MQ=60.00;MQRankSum=-1.000e-03;QD=28.54;ReadPosRankSum=1.94;SOR=0.738	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020479.seq	141349	chr01:92675	C	A	101034 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.89;DP=1577080;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=27.49;ReadPosRankSum=0.220;SOR=0.495	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020480.seq	141395	chr01:92629	T	G	636614 	.	AC=5;AF=6.545e-03;AN=764;BaseQRankSum=-4.130e-01;DP=1576930;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.7987;MLEAC=5;MLEAF=6.545e-03;MQ=60.00;MQRankSum=-1.000e-03;QD=26.13;ReadPosRankSum=0.158;SOR=0.634	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020481.seq	141554	chr01:92470	T	G	561374 	.	AC=6;AF=7.853e-03;AN=764;BaseQRankSum=2.58;DP=1575633;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=6;MLEAF=7.853e-03;MQ=60.00;MQRankSum=-4.600e-02;QD=30.75;ReadPosRankSum=0.092;SOR=0.479	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020482.seq	141824	chr01:92200	T	G	3150000 	.	AC=28;AF=0.037;AN=764;BaseQRankSum=2.25;DP=1577049;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=28;MLEAF=0.037;MQ=60.00;MQRankSum=0.00;QD=28.13;ReadPosRankSum=0.024;SOR=0.613	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020483.seq	141841	chr01:92183	T	G	243307 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.56;DP=1565163;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-3.100e-02;QD=32.30;ReadPosRankSum=-1.000e-01;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020484.seq	142211	chr01:91813	G	A	222085 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=2.41;DP=1561601;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=0.043;QD=27.52;ReadPosRankSum=0.689;SOR=0.731	GT:AD:DP:GQ:PGT:PID:PL	"0/0:2744,0:2744:99:.:.:0,120,1800"
NC_020485.seq	142229	chr01:91795	T	C	218014 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=1.42;DP=1561456;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=0.041;QD=30.74;ReadPosRankSum=-1.265e+00;SOR=0.752	GT:AD:DP:GQ:PGT:PID:PL	"0/0:2744,0:2744:99:.:.:0,120,1800"
NC_020486.seq	142265	chr01:91759	A	C	176849 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=3.27;DP=1561074;ExcessHet=0.0028;FS=1.195;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.031;QD=34.34;ReadPosRankSum=-9.940e-01;SOR=0.724	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020487.seq	142474	chr01:91550	C	A	491227 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=2.46;DP=1561597;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-1.000e-03;QD=39.31;ReadPosRankSum=0.601;SOR=0.689	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020488.seq	142546	chr01:91478	C	T	171587 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=0.249;DP=1561211;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=2.65;QD=33.73;ReadPosRankSum=0.529;SOR=0.679	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020489.seq	142927	chr01:91097	C	T	479924 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=-1.550e-01;DP=1561465;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-5.900e-02;QD=32.35;ReadPosRankSum=0.803;SOR=0.491	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020490.seq	142978	chr01:91046	C	A	167306 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-5.010e-01;DP=1559569;ExcessHet=0.0028;FS=1.248;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.206e+00;QD=34.86;ReadPosRankSum=1.05;SOR=0.466	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020491.seq	143014	chr01:91010	C	A	168222 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-1.630e-01;DP=1559613;ExcessHet=0.0028;FS=1.263;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.025;QD=34.74;ReadPosRankSum=-6.390e-01;SOR=0.507	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020492.seq	143271	chr01:90753	C	T	2570000 	.	AC=25;AF=0.033;AN=764;BaseQRankSum=0.998;DP=1562820;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.8759;MLEAC=25;MLEAF=0.033;MQ=60.00;MQRankSum=0.00;QD=36.94;ReadPosRankSum=0.511;SOR=0.747	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020493.seq	143302	chr01:90722	T	G	268558 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-3.220e-01;DP=1553586;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.800e-02;QD=31.89;ReadPosRankSum=-2.930e-01;SOR=0.826	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020494.seq	143379	chr01:90645	G	C	172346 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-4.240e-01;DP=1553215;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-2.900e-02;QD=34.27;ReadPosRankSum=2.08;SOR=0.677	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020495.seq	143500	chr01:90524	A	C	244990 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.28;DP=1552421;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-6.900e-02;QD=32.53;ReadPosRankSum=-9.600e-02;SOR=0.302	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020496.seq	143508	chr01:90516	A	C	1320000 	.	AC=18;AF=0.024;AN=764;BaseQRankSum=1.19;DP=1553102;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=18;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=32.29;ReadPosRankSum=0.493;SOR=0.757	GT:AD:DP:GQ:PL	"0/0:2744,0:2744:99:0,120,1800"
NC_020497.seq	144070	chr01:89954	G	"*,A"	22200000 	.	"AC=388,6;AF=0.508,7.853e-03;AN=764;BaseQRankSum=3.46;DP=1735994;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.9356;MLEAC=389,6;MLEAF=0.509,7.853e-03;MQ=7.66;MQRankSum=0.00;QD=28.82;ReadPosRankSum=-5.184e+00;SOR=0.792"	GT:AD:DP:GQ:PL	"1/1:242,1565,0:1811:99:51567,2965,0,57859,9439,119870"
NC_020498.seq	144113	chr01:89911	T	G	331545 	.	AC=7;AF=9.162e-03;AN=764;BaseQRankSum=2.32;DP=1439772;ExcessHet=11.1465;FS=0.897;InbreedingCoeff=0.0297;MLEAC=9;MLEAF=0.012;MQ=59.81;MQRankSum=0.00;QD=30.94;ReadPosRankSum=16.53;SOR=0.810	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020499.seq	144116	chr01:89908	T	C	163171 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.15;DP=1309168;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-2.500e-01;QD=34.61;ReadPosRankSum=0.511;SOR=0.469	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020500.seq	144618	chr01:89406	A	G	862704 	.	AC=6;AF=7.853e-03;AN=764;BaseQRankSum=-3.590e-01;DP=1309462;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=6;MLEAF=7.853e-03;MQ=60.00;MQRankSum=7.000e-03;QD=34.07;ReadPosRankSum=0.904;SOR=0.565	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020501.seq	144880	chr01:89144	T	G	159605 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.03;DP=1307259;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=34.58;ReadPosRankSum=-1.036e+00;SOR=0.688	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020502.seq	144954	chr01:89070	T	G	182916 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.47;DP=1307650;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=33.90;ReadPosRankSum=-1.252e+00;SOR=0.759	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020503.seq	145085	chr01:88939	T	G	233767 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.79;DP=1306015;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=35.53;ReadPosRankSum=0.474;SOR=0.540	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020504.seq	145145	chr01:88879	A	C	249488 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=2.32;DP=1306655;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=25.37;ReadPosRankSum=0.532;SOR=0.720	GT:AD:DP:GQ:PL	"0/0:2859,0:2859:99:0,120,1800"
NC_020505.seq	145335	chr01:88689	T	C	3110000 	.	AC=26;AF=0.034;AN=764;BaseQRankSum=-2.730e-01;DP=1314185;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=26;MLEAF=0.034;MQ=60.00;MQRankSum=-8.000e-03;QD=28.93;ReadPosRankSum=-1.360e-01;SOR=0.530	GT:AD:DP:GQ:PL	"1/1:80,3222:3303:99:118999,7073,0"
NC_020506.seq	145344	chr01:88680	A	C	131 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=1.63;DP=1286472;ExcessHet=3.0103;FS=0.976;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=0.00;QD=0.10;ReadPosRankSum=-6.190e-01;SOR=0.844	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020507.seq	145361	chr01:88663	G	A	3510000 	.	AC=30;AF=0.039;AN=764;BaseQRankSum=-7.200e-01;DP=1293438;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=30;MLEAF=0.039;MQ=60.00;MQRankSum=-5.300e-02;QD=29.57;ReadPosRankSum=0.606;SOR=0.711	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020508.seq	145693	chr01:88331	G	A	167688 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-2.166e+00;DP=1290623;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=33.34;ReadPosRankSum=1.88;SOR=0.716	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020509.seq	145740	chr01:88284	A	G	161077 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=2.42;DP=1290970;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=25.31;ReadPosRankSum=1.64;SOR=0.593	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020510.seq	145916	chr01:88108	C	G	158641 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.73;DP=1288763;ExcessHet=0.0028;FS=1.120;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=34.02;ReadPosRankSum=0.376;SOR=0.557	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020511.seq	145980	chr01:88044	A	C	485967 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=4.12;DP=1289767;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-1.000e-03;QD=30.42;ReadPosRankSum=-6.090e-01;SOR=0.464	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020512.seq	146230	chr01:87794	T	G	577296 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.37;DP=1289796;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-1.070e-01;QD=27.26;ReadPosRankSum=1.05;SOR=0.651	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020513.seq	146326	chr01:87698	T	C	158065 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-2.640e-01;DP=1284415;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.019;QD=32.96;ReadPosRankSum=0.662;SOR=0.745	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020514.seq	146382	chr01:87642	A	C	248446 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=0.463;DP=1283970;ExcessHet=0.0028;FS=2.003;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-5.200e-02;QD=28.61;ReadPosRankSum=-4.960e-01;SOR=0.401	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020515.seq	146631	chr01:87393	A	C	413202 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.19;DP=1284594;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=12.77;QD=23.49;ReadPosRankSum=0.804;SOR=0.728	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020516.seq	146755	chr01:87269	C	A	175347 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-1.747e+00;DP=1284285;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=33.49;ReadPosRankSum=-7.340e-01;SOR=0.725	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020517.seq	146783	chr01:87241	A	C	463231 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=1.84;DP=1284305;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=-6.000e-02;QD=32.06;ReadPosRankSum=0.500;SOR=0.777	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020518.seq	146799	chr01:87225	T	G	217780 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=2.33;DP=1278728;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=31.84;ReadPosRankSum=0.741;SOR=0.721	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020519.seq	146840	chr01:87184	A	C	286737 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=4.17;DP=1278371;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.310e-01;QD=27.89;ReadPosRankSum=0.550;SOR=0.600	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020520.seq	147353	chr01:86671	T	G	5630000 	.	AC=68;AF=0.089;AN=764;BaseQRankSum=-3.420e-01;DP=1299027;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=68;MLEAF=0.089;MQ=60.00;MQRankSum=0.00;QD=30.10;ReadPosRankSum=0.643;SOR=0.766	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020521.seq	147667	chr01:86357	A	C	3390000 	.	AC=28;AF=0.037;AN=764;BaseQRankSum=1.56;DP=1236417;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=28;MLEAF=0.037;MQ=60.00;MQRankSum=-5.300e-02;QD=31.16;ReadPosRankSum=0.225;SOR=0.617	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020522.seq	148483	chr01:85541	A	C	158236 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=3.35;DP=1213144;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=0.9997;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=34.21;ReadPosRankSum=0.620;SOR=0.675	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020523.seq	148944	chr01:85080	T	G	2370000 	.	AC=22;AF=0.029;AN=764;BaseQRankSum=1.98;DP=1220367;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=22;MLEAF=0.029;MQ=60.00;MQRankSum=-2.600e-02;QD=28.22;ReadPosRankSum=0.666;SOR=0.722	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020524.seq	149298	chr01:84726	A	C	6940000 	.	AC=58;AF=0.076;AN=764;BaseQRankSum=1.98;DP=1207056;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.9999;MLEAC=58;MLEAF=0.076;MQ=60.00;MQRankSum=-1.900e-02;QD=29.02;ReadPosRankSum=0.631;SOR=0.770	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020525.seq	149438	chr01:84586	T	G	169366 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=1.57;DP=1200449;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.00;QD=26.67;ReadPosRankSum=0.984;SOR=0.576	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020526.seq	149752	chr01:84272	T	G	700468 	.	AC=10;AF=0.013;AN=764;BaseQRankSum=0.853;DP=1199204;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.9999;MLEAC=10;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=29.86;ReadPosRankSum=0.834;SOR=0.665	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020527.seq	149843	chr01:84181	G	T	140323 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=-2.068e+00;DP=1189521;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=0.00;QD=31.23;ReadPosRankSum=0.669;SOR=0.726	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020528.seq	149846	chr01:84178	G	A	173115 	.	AC=1;AF=1.309e-03;AN=764;BaseQRankSum=-1.007e+00;DP=1189519;ExcessHet=3.0103;FS=0.000;InbreedingCoeff=-0.0013;MLEAC=1;MLEAF=1.309e-03;MQ=60.00;MQRankSum=-9.000e-03;QD=30.50;ReadPosRankSum=1.38;SOR=0.615	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020529.seq	150022	chr01:84002	G	T	143184 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=-2.994e+00;DP=1189623;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=0.9995;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=0.013;QD=31.09;ReadPosRankSum=-1.998e+00;SOR=0.631	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020530.seq	150225	chr01:83799	T	G	184721 	.	AC=2;AF=2.618e-03;AN=764;BaseQRankSum=0.134;DP=1190241;ExcessHet=0.0028;FS=0.000;InbreedingCoeff=1.0000;MLEAC=2;MLEAF=2.618e-03;MQ=60.00;MQRankSum=-1.180e-01;QD=34.72;ReadPosRankSum=0.329;SOR=0.405	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020531.seq	150444	chr01:83580	A	C	8110000 	.	AC=76;AF=0.099;AN=764;BaseQRankSum=1.06;DP=1197977;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=76;MLEAF=0.099;MQ=60.00;MQRankSum=-1.000e-02;QD=30.74;ReadPosRankSum=0.443;SOR=0.680	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"
NC_020532.seq	150655	chr01:83369	T	C	495902 	.	AC=4;AF=5.236e-03;AN=764;BaseQRankSum=0.759;DP=1113636;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=1.0000;MLEAC=4;MLEAF=5.236e-03;MQ=60.00;MQRankSum=0.00;QD=26.02;ReadPosRankSum=0.859;SOR=0.731	GT:AD:DP:GQ:PL	"0/0:1632,0:1632:99:0,120,1800"