CPGAVAS2

Brief Introduction

In a typical scenario, an annotation job consists of the following steps:

1. annotate a assembled plastome sequence using AnnoGenome
2. view the results using ViewAnno
3. download the annotation results in GFF3 file and load it into Apollo genome editor for editing
4. export the annotation from Apollo in GFF3 format
5. upload the edited annotation in GFF3 format to UpdateAnno

The UpdateAnno module is used to perform step 5. In our experience, many problems associated with this modules coming from incorrectly annotated GFF3 file.

If the GFF3 file is correct, the UpdateAnno module will regenerate the GenBank file, map file, sequin file, report file, sequence files.

Update the Annotations You Have Edited